mRNA_P-littoralis_Contig673.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.50.1
Unique NamemRNA_P-littoralis_Contig673.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig673.50.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.980e-18
Identity = 78/233 (33.48%), Postives = 97/233 (41.63%), Query Frame = 1 
Query:  286 DPARQQELIDEQAQHVALLHTTGGRPFNLPTAWLDRFAIVE-DEPNGDDDDGHAGDDMXXXXXXXXXXXXXXXXXXXXXXXXSGRLPGAAPQRGPARDNSEGVRGDKGPGM----GAFSFFLATAAPFLCGKIDDERIDENGEREVCVHWYTPS-DSLVASAGSGNFDKYGRAVFRPTFKVVRTQAAQGRRQRTTYTPDNGWEPASRIAASCRFLTGKNKHIPAVVLHTLRTA 966
            D    Q   DEQ Q V LL  TG R F+LP  WL  +     DE N   D G   D                          S   P    +RG  R        D+ P +    G+F+FF+A  APFL G+I  ER+ E GER V +HW  PS D L  +A S    +Y  + F   F V+ T    GR  +     D  WEP   I A+C  L G  + +P  VL  LR A
Sbjct:  418 DDGAVQRAKDEQKQSVRLLRQTGEREFDLPVHWLPVYDSGSGDEENVGPDTGDNNDAEQDFNGSGGHDHDGIDDEADDTSSDSDMEPEFR-RRGRPRATGRPTT-DRSPPISVQVGSFAFFVARRAPFLVGRIVAERLGEEGERGVDLHWLRPSSDYLSNNAASVTLREYSNSTFVEGF-VLDTCNGNGRSGKAKRVKDVSWEPVEGIVATCERLVGNGRKVPTKVLRVLRAA 647
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE3.980e-1833.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:147283..148322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1040
Hectar predicted targeting categoryother localisation
Exons1
Cds size816
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791403.3535726-UTR-P-littoralis_Contig673:147282..1473111680791403.3535726-UTR-P-littoralis_Contig673:147282..147311Pylaiella littoralis U1_48UTRP-littoralis_Contig673 147283..147311 -
1680791403.3809412-UTR-P-littoralis_Contig673:148127..1483221680791403.3809412-UTR-P-littoralis_Contig673:148127..148322Pylaiella littoralis U1_48UTRP-littoralis_Contig673 148128..148322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791403.3666778-CDS-P-littoralis_Contig673:147311..1481271680791403.3666778-CDS-P-littoralis_Contig673:147311..148127Pylaiella littoralis U1_48CDSP-littoralis_Contig673 147312..148127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.50.1prot_P-littoralis_Contig673.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 147312..148127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.50.1

>prot_P-littoralis_Contig673.50.1 ID=prot_P-littoralis_Contig673.50.1|Name=mRNA_P-littoralis_Contig673.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=272bp
MEGPRSASAVHITRSLFTRLPAVTATTSLSDPARQQELIDEQAQHVALLH
TTGGRPFNLPTAWLDRFAIVEDEPNGDDDDGHAGDDMGDEGGEERHSDHE
SSDEEDLRERQSGRLPGAAPQRGPARDNSEGVRGDKGPGMGAFSFFLATA
APFLCGKIDDERIDENGEREVCVHWYTPSDSLVASAGSGNFDKYGRAVFR
PTFKVVRTQAAQGRRQRTTYTPDNGWEPASRIAASCRFLTGKNKHIPAVV
LHTLRTAKGLGQQARPLGARK*
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mRNA from alignment at P-littoralis_Contig673:147283..148322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.50.1 ID=mRNA_P-littoralis_Contig673.50.1|Name=mRNA_P-littoralis_Contig673.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1040bp|location=Sequence derived from alignment at P-littoralis_Contig673:147283..148322- (Pylaiella littoralis U1_48)
AGCCCCACACAACGCAGAAGTTAATGTATTGATTCACCAAAACTTTTAAA
ATTTGTTTTCGTGTTGTGTGCGCGCTGCTCTTATTACAATGAGGCTGCAG
AGTTGTAGAGTTGGCTTGGTGAGGCTTAGGGTTACCATGCGATGTTATTG
AAGGCGAGTAGCCGCTATCGATATTTATGAAACACGAACGTTTACATGGA
AGGACCACGATCCGCCAGTGCGGTTCACATTACTCGTTCCCTGTTTACAC
GCCTTCCGGCGGTCACCGCTACTACGTCACTCTCAGATCCTGCCAGGCAG
CAAGAGCTGATAGACGAGCAAGCTCAGCACGTCGCCCTTTTGCACACTAC
GGGCGGCCGTCCGTTCAACCTCCCGACCGCCTGGCTAGACCGCTTCGCCA
TCGTCGAAGACGAACCCAACGGGGACGACGACGATGGCCACGCCGGAGAT
GACATGGGCGACGAGGGAGGTGAAGAGCGACACTCGGACCACGAAAGCTC
GGACGAAGAAGACTTGCGCGAAAGACAGTCTGGGAGACTGCCGGGGGCGG
CGCCACAAAGAGGGCCAGCAAGAGACAACTCGGAAGGCGTTCGCGGTGAC
AAGGGGCCTGGGATGGGCGCTTTCTCCTTTTTTTTGGCCACTGCGGCGCC
ATTTCTTTGTGGCAAAATCGACGACGAGCGGATTGACGAGAACGGGGAGC
GCGAGGTGTGTGTTCATTGGTACACACCGAGCGACAGCCTAGTCGCATCG
GCGGGGTCCGGAAACTTCGACAAGTACGGGCGGGCGGTTTTTCGCCCAAC
GTTCAAGGTCGTCCGCACCCAAGCGGCACAGGGACGGCGTCAGAGGACAA
CCTACACCCCTGACAACGGTTGGGAGCCAGCGTCCCGCATCGCGGCCTCG
TGCCGATTCCTAACCGGCAAAAACAAGCACATCCCTGCGGTTGTACTTCA
CACGCTGCGCACGGCGAAGGGCTTGGGGCAACAGGCCAGGCCCCTGGGTG
CACGTAAATAGTTTCGCACCGTTTGGTTTACCGAACGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:147283..148322-

>mRNA_P-littoralis_Contig673.50.1 ID=mRNA_P-littoralis_Contig673.50.1|Name=mRNA_P-littoralis_Contig673.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig673:147283..148322- (Pylaiella littoralis U1_48)
ATGGAAGGACCACGATCCGCCAGTGCGGTTCACATTACTCGTTCCCTGTT
TACACGCCTTCCGGCGGTCACCGCTACTACGTCACTCTCAGATCCTGCCA
GGCAGCAAGAGCTGATAGACGAGCAAGCTCAGCACGTCGCCCTTTTGCAC
ACTACGGGCGGCCGTCCGTTCAACCTCCCGACCGCCTGGCTAGACCGCTT
CGCCATCGTCGAAGACGAACCCAACGGGGACGACGACGATGGCCACGCCG
GAGATGACATGGGCGACGAGGGAGGTGAAGAGCGACACTCGGACCACGAA
AGCTCGGACGAAGAAGACTTGCGCGAAAGACAGTCTGGGAGACTGCCGGG
GGCGGCGCCACAAAGAGGGCCAGCAAGAGACAACTCGGAAGGCGTTCGCG
GTGACAAGGGGCCTGGGATGGGCGCTTTCTCCTTTTTTTTGGCCACTGCG
GCGCCATTTCTTTGTGGCAAAATCGACGACGAGCGGATTGACGAGAACGG
GGAGCGCGAGGTGTGTGTTCATTGGTACACACCGAGCGACAGCCTAGTCG
CATCGGCGGGGTCCGGAAACTTCGACAAGTACGGGCGGGCGGTTTTTCGC
CCAACGTTCAAGGTCGTCCGCACCCAAGCGGCACAGGGACGGCGTCAGAG
GACAACCTACACCCCTGACAACGGTTGGGAGCCAGCGTCCCGCATCGCGG
CCTCGTGCCGATTCCTAACCGGCAAAAACAAGCACATCCCTGCGGTTGTA
CTTCACACGCTGCGCACGGCGAAGGGCTTGGGGCAACAGGCCAGGCCCCT
GGGTGCACGTAAATAG
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