mRNA_P-littoralis_Contig671.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig671.11.1
Unique NamemRNA_P-littoralis_Contig671.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig671.11.1 vs. uniprot
Match: A0A6H5KRQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ7_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.010e-38
Identity = 78/142 (54.93%), Postives = 91/142 (64.08%), Query Frame = 1 
Query:   64 PFHGTFEACCTMCTRAEGCVAWSATSD-HKVRVNESLCVLYSSVVGQPVENEPLAGAIRSGTSRNEEFMMYLGPSLTIAKRWCAERNTNVLGSG-QQFAVTPAATAREEQNEXXXXXXXXXXXXXATALAA--EGSALPLCR 477
            PF+G FE CCT+CTR EGCVAWSAT D  K  VN S CVLYSSV  QPVE++ L  A+RSGT R EE M YLGPS++IA+RWC E N N+LGSG ++F V  A     E+N+             A A  A  E  ALPLCR
Sbjct:    9 PFYGNFEGCCTLCTRREGCVAWSATDDPSKALVNGSRCVLYSSVTRQPVEDKQLKRAVRSGTPRAEESMTYLGPSMSIARRWCTEDNGNILGSGGRRFTVVAARETTIEENKREQGDRETEEEEVAVAALAGLEWDALPLCR 150
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BLAST of mRNA_P-littoralis_Contig671.11.1 vs. uniprot
Match: D7FTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.860e-33
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    1 CNEAVGQYGEGSVEMDAVTSSPFHGTFEACCTMCTRAEGCVAWSATSD-HKVRVNESL----------CVLYSSVVGQPVENEPLAGAIRSGTSRNEEFMMYLGPSLTIAKR 303
            C E  GQYGEGSVEMDAV   PF+G FE CCT+CTR EGCVAWSAT+D  K  VN S           CVLYS V  QPVE++ L GA+RSGT R EE M YLGPS++IA+R
Sbjct:  303 CTEVAGQYGEGSVEMDAVRDGPFYGNFEGCCTLCTRREGCVAWSATNDPSKALVNGSRRGTLGGDDGRCVLYSLVTRQPVEDKQLKGAVRSGTPRAEESMTYLGPSMSIARR 414
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BLAST of mRNA_P-littoralis_Contig671.11.1 vs. uniprot
Match: D7G564_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G564_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.350e-31
Identity = 71/161 (44.10%), Postives = 89/161 (55.28%), Query Frame = 1 
Query:    1 CNEAVGQYGEGSVEMDAVTSSPFHGTFEACCTMCTRAEGCVAWSATSDHKVRV--NESLCVLYSSVVGQPVENEPLAGAIRSGTSRNEEFMMYLGPSLTIAKRWCAERNTNVLGSGQQFAVTPAATAREEQNEXXXXXXXXXXXXXATALAAEGSALPLCR 477
            C+E  GQY EGSVEM +V    F+G  EACCT+CTR EGCV WS T    +     E  CVLYSSV G PVE++ +  AI SG  R+EE MMYL  S++IA+ WC   +  VLGSG++  V  A  +                     ++A    ALPLCR
Sbjct:  139 CHEVAGQYPEGSVEMGSVGGVVFYGLAEACCTLCTRWEGCVGWSNTVKPDIATIDGEKKCVLYSSVSGPPVEDKAMNRAITSGVPRDEESMMYLAHSMSIARSWCTPDSARVLGSGKKLTVKAAGPS--------------------VSIADGDGALPLCR 279
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BLAST of mRNA_P-littoralis_Contig671.11.1 vs. uniprot
Match: A0A6H5KGQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.290e-31
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:    1 CNEAVGQYGEGSVEMDAVTSSPFHGTFEACCTMCTRAEGCVAWSATSDHKVRV--NESLCVLYSSVVGQPVENEPLAGAIRSGTSRNEEFMMYLGPSLTIAKRWCAERNTNVLGSGQQFAVTPA 366
            C+E  GQY EGSVEM +V S  F+G  EACCT+CTR EGCV WS T    +     +  CVLYSSV G PVE++ +  AI SG  R+EE MMYL  S++IA+ WC   N  VLGSG++  V  A
Sbjct:  208 CHEVAGQYPEGSVEMGSVGSVVFYGLAEACCTLCTRWEGCVGWSNTVKFDIAPIDGKKRCVLYSSVSGPPVEDKAMNRAITSGIPRDEESMMYLAHSMSIARSWCTPDNARVLGSGKKLTVKAA 331
[Close]
BLAST of mRNA_P-littoralis_Contig671.11.1 vs. uniprot
Match: A0A6H5JQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 9.720e-25
Identity = 62/139 (44.60%), Postives = 74/139 (53.24%), Query Frame = 1 
Query:   67 FHGTFEACCTMCTRAEGCVAWSATSDHKVRVNESL--CVLYSSVVGQPVENEPLAGAIRSGTSRNEEFMMYLGPSLTIAKRWCAERNTNVLGSGQQFAVTPAATAREEQNEXXXXXXXXXXXXXATALAAEGSALPLCR 477
            F G  EACCT+CTR EGCV WS T    +   +    CVLYSSV G PVE++ +  AI SG  R+EE MMYL  S++IAK WC   N  VLGSG++  V  AA                        +A E  ALPLCR
Sbjct:    2 FFGVAEACCTLCTRLEGCVGWSNTVKPDIASIDGTKKCVLYSSVSGPPVEDKAMNRAITSGIPRDEESMMYLAHSMSIAKSWCTPDNARVLGSGKKLTVKAAAPV---------------------PIADEEGALPLCR 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig671.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRQ7_9PHAE2.010e-3854.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTZ1_ECTSI1.860e-3361.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G564_ECTSI2.350e-3144.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGQ9_9PHAE4.290e-3152.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQJ9_9PHAE9.720e-2544.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig671contigP-littoralis_Contig671:68580..70796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G564
Model size481
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.86e-32
EggNOG OGs2EYHI@1|root,2T00I@2759|Eukaryota
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791399.6802504-CDS-P-littoralis_Contig671:68579..686351680791399.6802504-CDS-P-littoralis_Contig671:68579..68635Pylaiella littoralis U1_48CDSP-littoralis_Contig671 68580..68635 +
1680791399.6919298-CDS-P-littoralis_Contig671:69207..693211680791399.6919298-CDS-P-littoralis_Contig671:69207..69321Pylaiella littoralis U1_48CDSP-littoralis_Contig671 69208..69321 +
1680791399.7119937-CDS-P-littoralis_Contig671:69839..699711680791399.7119937-CDS-P-littoralis_Contig671:69839..69971Pylaiella littoralis U1_48CDSP-littoralis_Contig671 69840..69971 +
1680791399.7238407-CDS-P-littoralis_Contig671:70618..707961680791399.7238407-CDS-P-littoralis_Contig671:70618..70796Pylaiella littoralis U1_48CDSP-littoralis_Contig671 70619..70796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig671.11.1prot_P-littoralis_Contig671.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig671 68580..70796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig671.11.1

>prot_P-littoralis_Contig671.11.1 ID=prot_P-littoralis_Contig671.11.1|Name=mRNA_P-littoralis_Contig671.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
CNEAVGQYGEGSVEMDAVTSSPFHGTFEACCTMCTRAEGCVAWSATSDHK
VRVNESLCVLYSSVVGQPVENEPLAGAIRSGTSRNEEFMMYLGPSLTIAK
RWCAERNTNVLGSGQQFAVTPAATAREEQNEGQGEQQQQSEMAAATALAA
EGSALPLCR*
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mRNA from alignment at P-littoralis_Contig671:68580..70796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig671.11.1 ID=mRNA_P-littoralis_Contig671.11.1|Name=mRNA_P-littoralis_Contig671.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2217bp|location=Sequence derived from alignment at P-littoralis_Contig671:68580..70796+ (Pylaiella littoralis U1_48)
TGCAACGAGGCGGTCGGGCAGTACGGCGAGGGCTCCGTGGAGATGGACGC
AGTCACGTGAGATGGGGCCATACCCCTGTGCCGTACTAATGATGCCGTTT
TTGCCACGTTGATACTGCGCTCTGAAAAACCATGAATTATGCGTTTAGAC
ACCGCGCCTGATATGTGTATGCACGACTTGGCGCGTTGGCTTCGGTGTGG
TTGGCTTTGCTGCAATCGGTGGCTCGGTGTGCCATCTAGAATGAGGTGCA
ACGTGGTCTACGTAGAAACGCTCCCCTTGCGTTGATTTTCACATGTGTTG
CCCCTCAAGTGTTGCCCCCTCAAGAGAAGCGCGTTTGCGACGTACCCACC
GGCATATCCCCCTGAAGAACGTTAAGTTTTTGCCATCATTGCGTATGGAC
ATTTTGGTAGGCGAGAGCAATATTTAATACGAAGTACTTTGAACTTTTGT
GATTCGGCGCTCAAAAGGCGGTTGTGTACTACCCAAAGCTCCCGTGACAT
CTCGGGACCCCTGGCGACCTATTCCAATCTCGTGCACGCTCCTGCAATAT
ACCTTTCTCTCTGTCTGTCCGTCTGTCTGTCTGTCTCCGGCCTCTCTATT
GCAACACTACCGTGATCCAAAATAACAGTAGCAGCCCTTTCCACGGCACC
TTCGAGGCGTGCTGCACCATGTGCACCCGGGCGGAGGGCTGCGTGGCGTG
GTCGGCCACCAGCGACCACAAAGTCCGCGTCAACGAGAGCCTGTAAGTGC
GGCAAACGGAGCACGCATGGCATGCTAGTATGTCTGCAGTAAATAAAGGC
TAAAAGGTGAAGGCTTGGTTGCGCATGGAACCACGAAAAACAAGCGTCGA
AAGCAAGAAACAAGCATCCATTTGAGAAAAATCCTCTCCGATGGCAAATA
AAGACGTTTAAATATTGGTAGCATCCCCTACACCAATGCTTATCGAGCAC
TGCAAATGCCGTGCAGTTTCACGTTGTTGGTATACATGCGCCATCGATCT
TGTGCTGCTTCACAGCAGTAGTCAGCAGTATCGCAGTGTTACCCTGACGG
CTGGCCGTCTTCACCTATTCGATTTCATAACTTGGTCGTATAGTGAGGCA
CATTTGCAATGTGATGCGACGCGTCGCGTGCTGTGCGATCTTACGTGTCG
CGTGTTTTCCACCATGTGTCTTGCGATGAAATACGGCATGCGTCATATGC
ACAGCTTGTGATGAGTCCCAGCTTGATGCGATGCGGTGAAATGGTGCGTT
TCTCAATCAGGTGCGTCCTCTACTCGTCGGTGGTTGGCCAGCCCGTGGAG
AACGAGCCCCTTGCAGGCGCCATTCGCAGTGGCACGTCGAGGAATGAAGA
GTTCATGATGTACCTCGGCCCTTCTTTGACGATCGCTAAGAGGTGCGTTC
TTGTTATTCTCGAGTACGAAAACTGTGTTACAGTTAACGAATGAAACGAC
CGGTGTATCCTGAGTCGCAGCGAGAAGCTAGCCATATCACTGCCTCGCGT
GTATCGACTTCGAGTCTACCTGGTGCAGCTTTGCTGGGCATGCCGCTCGT
GATACCATGCACTTGTATACTGTAGCCCGCATGTGGCCGCCGTGGTTTCT
GTTCGATTCTTGCCTTGCAACGACTGCGGGCAGACGTGTCGCCCTGTGCC
ACCCGTATACCGCTCGCAACATGATACGCCGAGTACCATTTCGTCTTCCA
GCATTTTCGATGTCTCGGAGCCAAAGACGAGGCTTCGGCGAGATAATGGC
CGCGGTCGTCAACTGACGCGTACAGCCAGGGAAAAAAAAAAACTTCAGAA
AGCAGTACACGCACATTTCGTTTTCGTGCAAATACTTCACGCCCATGCAG
GGTTGAGAGGTGGTCGACTGGTGACGGGACATATACTCCCTGGAAGACAA
TGTTCCCTTAATATGGTTTTCTCCCTGGTTGTGACTTTTCAATCGCGCGG
TGCTCCAATGAGACACTATACTTTACGCTGCGGCTGCGTGCGTTACTGTT
CTGAAGACGCCCGTGTTCCGTTACGTTGTGGCGCAACAGGTGGTGCGCAG
AGAGAAATACCAATGTGTTGGGTAGCGGCCAGCAGTTCGCCGTCACGCCG
GCGGCAACAGCTCGAGAAGAACAAAATGAAGGACAAGGAGAACAACAACA
GCAGTCAGAGATGGCTGCAGCAACAGCACTGGCGGCTGAAGGTTCCGCGT
TGCCCTTGTGCAGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig671:68580..70796+

>mRNA_P-littoralis_Contig671.11.1 ID=mRNA_P-littoralis_Contig671.11.1|Name=mRNA_P-littoralis_Contig671.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig671:68580..70796+ (Pylaiella littoralis U1_48)
TGCAACGAGGCGGTCGGGCAGTACGGCGAGGGCTCCGTGGAGATGGACGC
AGTCACTAGCAGCCCTTTCCACGGCACCTTCGAGGCGTGCTGCACCATGT
GCACCCGGGCGGAGGGCTGCGTGGCGTGGTCGGCCACCAGCGACCACAAA
GTCCGCGTCAACGAGAGCCTGTGCGTCCTCTACTCGTCGGTGGTTGGCCA
GCCCGTGGAGAACGAGCCCCTTGCAGGCGCCATTCGCAGTGGCACGTCGA
GGAATGAAGAGTTCATGATGTACCTCGGCCCTTCTTTGACGATCGCTAAG
AGGTGGTGCGCAGAGAGAAATACCAATGTGTTGGGTAGCGGCCAGCAGTT
CGCCGTCACGCCGGCGGCAACAGCTCGAGAAGAACAAAATGAAGGACAAG
GAGAACAACAACAGCAGTCAGAGATGGCTGCAGCAACAGCACTGGCGGCT
GAAGGTTCCGCGTTGCCCTTGTGCAGGTAG
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