prot_P-littoralis_Contig670.12.4 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig670.12.4
Unique Nameprot_P-littoralis_Contig670.12.4
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length468
Homology
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BLAST of mRNA_P-littoralis_Contig670.12.4 vs. uniprot
Match: D7FH14_ECTSI (Hypothetical F-box and leucine rich repeat containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH14_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 8.340e-155
Identity = 311/343 (90.67%), Postives = 325/343 (94.75%), Query Frame = 0 
Query:  125 SLFKAVDAGEEKLRNGDLALLVRRFPAVNDLTVRFASKLTSAYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVCLRGFRQLKDEDVQLLLDSCPSLSILSVADCTTLGSLILRSKQLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCAMESLVGSCLALKHLGLKGCSALVSPSIHSAKLESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSMLGIKNLTLNCNKLIDANLRGSYKLESSNILSRCPGLSMVDLCGTSINPEAFARSDGEGEGDVIQGGVPLRWHTY 467
            SLFKAVDAGEE+LRN DLALLVRRFPAVNDLT+R AS+LT+AYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEV L GFRQLKDEDVQ LLDSCPSLS+LSVADCTTLGSL+LRS QLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCA+ESL+GSCLAL+HLGLKGCSALVSP+I SAKL S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DLSMLG+KNLTLNCNKL+ ANLRGSYKLES+NI SRCPGLS+VDLCGT INPEAF RSDGEGEGDVIQGG PL WHTY
Sbjct:   41 SLFKAVDAGEEELRNADLALLVRRFPAVNDLTIRSASRLTTAYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVSLCGFRQLKDEDVQFLLDSCPSLSVLSVADCTTLGSLVLRSTQLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCAVESLMGSCLALEHLGLKGCSALVSPTIQSAKLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLDLSMLGVKNLTLNCNKLVYANLRGSYKLESANIQSRCPGLSVVDLCGTKINPEAFVRSDGEGEGDVIQGGAPLPWHTY 383
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig670.12.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH14_ECTSI8.340e-15590.67Hypothetical F-box and leucine rich repeat contain... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 320..344
e-value: 240.0
score: 3.8
coord: 226..251
e-value: 36.0
score: 10.2
coord: 294..319
e-value: 13.0
score: 13.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 293..447
e-value: 5.5E-9
score: 37.4
coord: 107..292
e-value: 5.3E-22
score: 80.2
NoneNo IPR availablePANTHERPTHR13318:SF165FI07223Pcoord: 130..268
NoneNo IPR availablePANTHERPTHR13318:SF165FI07223Pcoord: 263..336
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 263..336
coord: 130..268
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 145..335

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig670contigP-littoralis_Contig670:96214..102121 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig670.12.4mRNA_P-littoralis_Contig670.12.4Pylaiella littoralis U1_48mRNAP-littoralis_Contig670 95910..103570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig670.12.4 ID=prot_P-littoralis_Contig670.12.4|Name=mRNA_P-littoralis_Contig670.12.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=468bp
MKDTKNRVLCAPRHVYYRHVSGFLSRLLFRPFPDSVPDLINCSLFPDFPT
YFPTVPIPPRNFEFPSHPANLLASRVPVPFPSRGTRTGTFSRTVLGNAQK
CSACGGQNVTVPRGALVYTGKGPLSLFKAVDAGEEKLRNGDLALLVRRFP
AVNDLTVRFASKLTSAYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTF
ESMRYLSLDGTFYVKSQAINALAKAGQQLQEVCLRGFRQLKDEDVQLLLD
SCPSLSILSVADCTTLGSLILRSKQLKTLDVSRCIHISEMSLEMPALTRL
DANWCTKLPDCAMESLVGSCLALKHLGLKGCSALVSPSIHSAKLESLDLS
LCEKLTTCSISGPSLTELKVAMCMGLNSLTLDLPIMTSLDLSMLGIKNLT
LNCNKLIDANLRGSYKLESSNILSRCPGLSMVDLCGTSINPEAFARSDGE
GEGDVIQGGVPLRWHTY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf