mRNA_P-littoralis_Contig67.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig67.27.1
Unique NamemRNA_P-littoralis_Contig67.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig67.27.1 vs. uniprot
Match: A0A6H5JCF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF1_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 8.710e-42
Identity = 176/382 (46.07%), Postives = 196/382 (51.31%), Query Frame = 1 
Query: 1021 QPSINNLWSLIPGTLEREGSRST-----------GHHNNATNGNMSNGAPGQQCIVRD--RRYAPDVHRPLSDIARRHRARALARLRARRQALAETALSS----------GRPAPVKSQSSETTDEADSHSDGRNDRHDDHQRHRSKVVVVDGGGGVARAVSXXXXXXXXXXXXXXFSGGPSSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKAAPGNSNA--------SKVGDLFELMRNVTMNFGT--------GGDAVNGEESLARELGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSVTELMALRRAEREQQKNEEVSPVPVGAG 2049
            +PSINNLWSLIPGTL+R+G  +                            G      D  R +APDVH PL+D+ARRHRA                               RPAP K  SSETT+E +S SDG  D  + H+ HRSKV +VDGG GV RAVS XXXXXXXXXXXXX          XXXXXXXXXXXXXXXXX                                                              P             SKVGDLF+LMRNVTM+FG          G AV+GEE+LARE GKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVS+TELMALRRAERE+Q+  E +PVPVGAG
Sbjct:  362 KPSINNLWSLIPGTLKRDGGGARPXXXXXXXXXXXXXXXXXXXXXXXXXXGAGAYDHDNARWFAPDVHPPLTDMARRHRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPAPAKRHSSETTNEPESGSDGEEDD-ELHRHHRSKVFLVDGGSGVPRAVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEAGVSHDVGCGGRVERAANTAEEPKTPGIAPLLTSTVVSGSGSSSSSNVDDTPVIPDPFRPSXXXXXXXXXXXXSKVGDLFQLMRNVTMSFGGDGGGGRDGAGGAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGAG 742
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BLAST of mRNA_P-littoralis_Contig67.27.1 vs. uniprot
Match: D7FVM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM3_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 2.770e-34
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1 
Query: 1762 ASKVGDLFELMRNVTMNFG------------TGGDAVNGEESLARELGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSVTELMALRRAEREQQKNEEVSPVPVGAG 2049
            +SKVGDLF+LMRNVTM+FG                AV+GEE+LARE GKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVS+TELMALRRAERE+Q+  E +PVPVGAG
Sbjct:  234 SSKVGDLFQLMRNVTMSFGGXXXXXXXXXXXXXXGAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGAG 341
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig67.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCF1_9PHAE8.710e-4246.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM3_ECTSI2.770e-3473.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig67contigP-littoralis_Contig67:173497..175752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2053
Hectar predicted targeting categoryother localisation
Exons3
Cds size2052
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791393.6226711-CDS-P-littoralis_Contig67:173496..1746161680791393.6226711-CDS-P-littoralis_Contig67:173496..174616Pylaiella littoralis U1_48CDSP-littoralis_Contig67 173497..174616 -
1680791393.6506407-CDS-P-littoralis_Contig67:174745..1754851680791393.6506407-CDS-P-littoralis_Contig67:174745..175485Pylaiella littoralis U1_48CDSP-littoralis_Contig67 174746..175485 -
1680791393.6628685-CDS-P-littoralis_Contig67:175560..1757521680791393.6628685-CDS-P-littoralis_Contig67:175560..175752Pylaiella littoralis U1_48CDSP-littoralis_Contig67 175561..175752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig67.27.1prot_P-littoralis_Contig67.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig67 173497..175752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig67.27.1

>prot_P-littoralis_Contig67.27.1 ID=prot_P-littoralis_Contig67.27.1|Name=mRNA_P-littoralis_Contig67.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=684bp
SAPPPAAPTSTARPIPVSPRNPEQHSRSRYWHSIQNTAAVLPSSQPPPRA
APANPYPFYPTPVASSRTRADQQQQQQQQQQQQQHLLGYFTTRNPAEVST
RPNFPVTSGGIHGWAVQQHQQHDHQQQTGPAVATAAAAPAPGPRPRQGGV
GEWRPCFDPPTMMADPRAGTAVGHVQSSPVDQWIFHQQRREQRPGIRTVQ
NSPPAPSSSPSAHDVGHPGIVLGPVPSRHSFPSGYAQKASGGRGSVDSPQ
HHIHHVVLQEQYHKYPPTAAPVVAAASSASAAAATAAAVLPASRVHHHYY
DSYEQPKQGYTQQQQQQQPRQRHQEAPKQQEVKQQQQRRQQPSINNLWSL
IPGTLEREGSRSTGHHNNATNGNMSNGAPGQQCIVRDRRYAPDVHRPLSD
IARRHRARALARLRARRQALAETALSSGRPAPVKSQSSETTDEADSHSDG
RNDRHDDHQRHRSKVVVVDGGGGVARAVSGGVSRGVSGSVPRAFSGGPSS
TAGGTSAAGAGGSEDKAAAAAATVDGSSASGEEGASPATAGSRNGSAAPE
TTITATKTTPAAPAGGNSRADDDAADNSSKAAPGNSNASKVGDLFELMRN
VTMNFGTGGDAVNGEESLARELGKPVKYRYRQEAARSRKRTRGRFVSEKA
PAFVSVTELMALRRAEREQQKNEEVSPVPVGAG*
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mRNA from alignment at P-littoralis_Contig67:173497..175752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig67.27.1 ID=mRNA_P-littoralis_Contig67.27.1|Name=mRNA_P-littoralis_Contig67.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2256bp|location=Sequence derived from alignment at P-littoralis_Contig67:173497..175752- (Pylaiella littoralis U1_48)
TCAGCTCCGCCTCCGGCCGCTCCTACCTCCACCGCCAGACCGATTCCGGT
GTCCCCACGGAACCCTGAACAGCATTCTCGATCCCGGTACTGGCACTCCA
TCCAAAATACAGCAGCGGTGTTACCTTCTTCGCAACCACCCCCACGAGCA
GCACCCGCGAACCCCTACCCCTTCTACCCGACACCTGTGGCTGTGGCAGC
GGCTGTTCCCTCCGGCCCAGCGTACGCGGACCAGCAGCAGCAGCAGCAGC
AGCATGTTTCGCGACAGAGCAGCAGGACACGTGCAGACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTGTTGGGTTATTTCACCAC
GAGAAATCCAGCTGAAGTTTCAACGCGGCCAAACTTCCCTGTGACTTCTG
GTGGAATCCATGGATGGGCAGTTCAGCAGCATCAGCAGCACGACCATCAG
CAACAGACTGGACCCGCCGTTGCTACCGCCGCAGCAGCACCAGCACCAGG
CCCTCGCCCCAGGCAAGGTGGTGTAGGAGAGTGGAGACCTTGCTTCGATC
CGCCGACGATGATGGCGGATCCTCGGGCCGGCACGGCCGTCGGGCACGTT
CAATCTTCGCCCGTCGACCAGTGGATATTCCATCAGCAACGGCGCGAGCA
ACGGCCCGGGATTCGGACCGTCCAAAATTCTCCTCCGGCGCCATCTTCCT
CTCCTTCTGCTCATGACGTAGGTCATCCTGGGATTGTTTTGGGCCCAGTT
CCCAGCAGACACTCATTTCCTTCGGGGTATGCCCAGAAAGCTAGTGGTGG
ACGTGGCAGCGTGGATTCACCGCAGCACCATATTCATCACGTTGTTCTTC
AGGAACAGTACCACAAGTACCCGCCTACGGCTGCTCCTGTCGTTGCTGCC
GCTTCGTCTGCTTCAGCTGCTGCTGCCACTGCCGCTGCTGTTCTTCCTGC
AAGCCGTGTCCACCATCACTACTATGACTCATATGAGCAGCCGAAGCAAG
GGTACACGTACCAGCGCCACCAGCAGCATGATGGATACCCCGAGACGCAG
CACAGCCAGCAAGAGCTGGAAGGCATCCGCTCCGAGCACCGGCCTGCGAC
CGCCTCCGCCGGCGCTCAGCCGGCGCAGGAGCAGAGCCAGCAACAGCAGC
AGCAACAGCCGCGGCAACGACACCAGGAAGCCCCAAAGCAGCAGGAAGTG
AAACAACAACAACAACGACGACAACAACCGTCCATCAACAATCTCTGGAG
CCTGATCCCGGGGACGCTCGAGAGGGAGGGTTCCCGATCGACTGGCCACC
ACAACAACGCCACGAACGGTAACATGAGCAACGGAGCACCGGGCCAACAA
TGCATCGTCAGAGACAGACGGTACGCCCCGGACGTTCACCGTCCGCTCTC
AGACATCGCCCGCCGGCACCGCGCCAGAGCGCTCGCGCGTCTCCGCGCGC
GTCGACAGGCTCTGGCCGAGACCGCGCTGAGCTCCGGCCGGCCTGCCCCG
GTCAAGTCGCAATCCTCCGAAACGACCGACGAGGCCGACAGCCACAGCGA
TGGAAGAAATGACCGTCATGACGACCACCAGCGGCACCGCAGCAAGGTTG
TCGTGGTGGACGGCGGGGGCGGGGTGGCTCGCGCCGTGAGCGGCGGGGTT
TCGCGCGGGGTCAGCGGCAGCGTTCCTCGTGCGTTCAGCGGGGGCCCTTC
TAGTACTGCCGGCGGCACCTCCGCCGCCGGTGCAGGCGGCAGCGAGGACA
AGGCCGCCGCCGCCGCCGCCACCGTTGACGGCAGCAGCGCCAGCGGTGAA
GAGGGCGCTTCACCTGCTACGGCGGGCAGTAGAAATGGTTCGGCGGCGCC
GGAAACGACGATAACGGCAACGAAAACAACACCGGCCGCACCTGCCGGTG
GCAACAGCCGTGCTGACGACGATGCCGCCGACAACAGCAGTAAAGCTGCC
CCCGGCAACAGCAACGCTTCTAAGGTCGGAGATCTGTTCGAGCTCATGCG
CAACGTGACGATGAACTTTGGCACGGGAGGGGACGCCGTCAACGGCGAGG
AGAGCCTGGCCCGGGAGCTCGGGAAGCCGGTCAAGTACCGCTATCGCCAG
GAGGCCGCGCGGTCCCGGAAGCGCACGCGAGGCCGGTTCGTCAGCGAGAA
GGCGCCGGCGTTCGTGTCCGTCACCGAGCTGATGGCCCTGAGGCGGGCGG
AGCGGGAGCAGCAGAAGAACGAGGAGGTGTCGCCCGTTCCGGTAGGAGCT
GGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig67:173497..175752-

>mRNA_P-littoralis_Contig67.27.1 ID=mRNA_P-littoralis_Contig67.27.1|Name=mRNA_P-littoralis_Contig67.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2052bp|location=Sequence derived from alignment at P-littoralis_Contig67:173497..175752- (Pylaiella littoralis U1_48)
TCAGCTCCGCCTCCGGCCGCTCCTACCTCCACCGCCAGACCGATTCCGGT
GTCCCCACGGAACCCTGAACAGCATTCTCGATCCCGGTACTGGCACTCCA
TCCAAAATACAGCAGCGGTGTTACCTTCTTCGCAACCACCCCCACGAGCA
GCACCCGCGAACCCCTACCCCTTCTACCCGACACCTGTGGCTAGCAGCAG
GACACGTGCAGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCACCTGTTGGGTTATTTCACCACGAGAAATCCAGCTGAAGTTTCAACG
CGGCCAAACTTCCCTGTGACTTCTGGTGGAATCCATGGATGGGCAGTTCA
GCAGCATCAGCAGCACGACCATCAGCAACAGACTGGACCCGCCGTTGCTA
CCGCCGCAGCAGCACCAGCACCAGGCCCTCGCCCCAGGCAAGGTGGTGTA
GGAGAGTGGAGACCTTGCTTCGATCCGCCGACGATGATGGCGGATCCTCG
GGCCGGCACGGCCGTCGGGCACGTTCAATCTTCGCCCGTCGACCAGTGGA
TATTCCATCAGCAACGGCGCGAGCAACGGCCCGGGATTCGGACCGTCCAA
AATTCTCCTCCGGCGCCATCTTCCTCTCCTTCTGCTCATGACGTAGGTCA
TCCTGGGATTGTTTTGGGCCCAGTTCCCAGCAGACACTCATTTCCTTCGG
GGTATGCCCAGAAAGCTAGTGGTGGACGTGGCAGCGTGGATTCACCGCAG
CACCATATTCATCACGTTGTTCTTCAGGAACAGTACCACAAGTACCCGCC
TACGGCTGCTCCTGTCGTTGCTGCCGCTTCGTCTGCTTCAGCTGCTGCTG
CCACTGCCGCTGCTGTTCTTCCTGCAAGCCGTGTCCACCATCACTACTAT
GACTCATATGAGCAGCCGAAGCAAGGGTACACCCAGCAACAGCAGCAGCA
ACAGCCGCGGCAACGACACCAGGAAGCCCCAAAGCAGCAGGAAGTGAAAC
AACAACAACAACGACGACAACAACCGTCCATCAACAATCTCTGGAGCCTG
ATCCCGGGGACGCTCGAGAGGGAGGGTTCCCGATCGACTGGCCACCACAA
CAACGCCACGAACGGTAACATGAGCAACGGAGCACCGGGCCAACAATGCA
TCGTCAGAGACAGACGGTACGCCCCGGACGTTCACCGTCCGCTCTCAGAC
ATCGCCCGCCGGCACCGCGCCAGAGCGCTCGCGCGTCTCCGCGCGCGTCG
ACAGGCTCTGGCCGAGACCGCGCTGAGCTCCGGCCGGCCTGCCCCGGTCA
AGTCGCAATCCTCCGAAACGACCGACGAGGCCGACAGCCACAGCGATGGA
AGAAATGACCGTCATGACGACCACCAGCGGCACCGCAGCAAGGTTGTCGT
GGTGGACGGCGGGGGCGGGGTGGCTCGCGCCGTGAGCGGCGGGGTTTCGC
GCGGGGTCAGCGGCAGCGTTCCTCGTGCGTTCAGCGGGGGCCCTTCTAGT
ACTGCCGGCGGCACCTCCGCCGCCGGTGCAGGCGGCAGCGAGGACAAGGC
CGCCGCCGCCGCCGCCACCGTTGACGGCAGCAGCGCCAGCGGTGAAGAGG
GCGCTTCACCTGCTACGGCGGGCAGTAGAAATGGTTCGGCGGCGCCGGAA
ACGACGATAACGGCAACGAAAACAACACCGGCCGCACCTGCCGGTGGCAA
CAGCCGTGCTGACGACGATGCCGCCGACAACAGCAGTAAAGCTGCCCCCG
GCAACAGCAACGCTTCTAAGGTCGGAGATCTGTTCGAGCTCATGCGCAAC
GTGACGATGAACTTTGGCACGGGAGGGGACGCCGTCAACGGCGAGGAGAG
CCTGGCCCGGGAGCTCGGGAAGCCGGTCAAGTACCGCTATCGCCAGGAGG
CCGCGCGGTCCCGGAAGCGCACGCGAGGCCGGTTCGTCAGCGAGAAGGCG
CCGGCGTTCGTGTCCGTCACCGAGCTGATGGCCCTGAGGCGGGCGGAGCG
GGAGCAGCAGAAGAACGAGGAGGTGTCGCCCGTTCCGGTAGGAGCTGGGT
GA
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