mRNA_P-littoralis_Contig666.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.32.1
Unique NamemRNA_P-littoralis_Contig666.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig666.32.1 vs. uniprot
Match: D8LBS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS1_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 9.860e-49
Identity = 114/207 (55.07%), Postives = 128/207 (61.84%), Query Frame = 1 
Query:    1 IMEQEGFGEDSDDELSAMAWAVAIRGKSGREIAQLHESWSESLLARGFFGQAQEHLDQALQAWTSYDEPVLMARAWCLKASCSGEAGEFSAAAASFKAAQKLAESAGDVSLVLCILINRAICEIRLGDCKXXXXXXXXXXXXXXXXXDPEMTLKTLCVR*ASSYQMTGNFLAACNEHEAAAKLVKEGHVLPPGPDFSVAMDTNFGIR 621
            + E + F ED D ELSAMAW  AIRGKSGREIA LH+SW+ + LARG F +AQEHLD AL+AWT YDEP L ARAWCLKASCSGEAG+                                          XXXXXXXXXXXXXXXXX          +R A SYQMTGNFLAACNEHEAAAKL ++  V P  P F++ M+TNFGIR
Sbjct:    1 MQEHQDFEEDDDGELSAMAWESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIR-AMSYQMTGNFLAACNEHEAAAKLAEQRQVHPLAPAFALGMETNFGIR 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBS1_ECTSI9.860e-4955.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:94531..96695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_002920.1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791386.1576407-UTR-P-littoralis_Contig666:94530..946711680791386.1576407-UTR-P-littoralis_Contig666:94530..94671Pylaiella littoralis U1_48UTRP-littoralis_Contig666 94531..94671 -
1680791386.21288-UTR-P-littoralis_Contig666:96692..966951680791386.21288-UTR-P-littoralis_Contig666:96692..96695Pylaiella littoralis U1_48UTRP-littoralis_Contig666 96693..96695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791386.1699457-CDS-P-littoralis_Contig666:94671..946721680791386.1699457-CDS-P-littoralis_Contig666:94671..94672Pylaiella littoralis U1_48CDSP-littoralis_Contig666 94672..94672 -
1680791386.1883044-CDS-P-littoralis_Contig666:95075..953951680791386.1883044-CDS-P-littoralis_Contig666:95075..95395Pylaiella littoralis U1_48CDSP-littoralis_Contig666 95076..95395 -
1680791386.2005055-CDS-P-littoralis_Contig666:96536..966921680791386.2005055-CDS-P-littoralis_Contig666:96536..96692Pylaiella littoralis U1_48CDSP-littoralis_Contig666 96537..96692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.32.1prot_P-littoralis_Contig666.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 94672..96692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.32.1

>prot_P-littoralis_Contig666.32.1 ID=prot_P-littoralis_Contig666.32.1|Name=mRNA_P-littoralis_Contig666.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MEQEGFGEDSDDELSAMAWAVAIRGKSGREIAQLHESWSESLLARGFFGQ
AQEHLDQALQAWTSYDEPVLMARAWCLKASCSGEAGEFSAAAASFKAAQK
LAESAGDVSLVLCILINRAICEIRLGDCKAAATRSRRAFVRAEAEGDPEM
TLKTLCVR*
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mRNA from alignment at P-littoralis_Contig666:94531..96695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.32.1 ID=mRNA_P-littoralis_Contig666.32.1|Name=mRNA_P-littoralis_Contig666.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2165bp|location=Sequence derived from alignment at P-littoralis_Contig666:94531..96695- (Pylaiella littoralis U1_48)
ATCATGGAGCAAGAAGGATTCGGGGAAGATAGTGATGATGAGTTATCGGC
GATGGCCTGGGCAGTGGCAATACGGGGGAAGAGCGGCCGAGAGATCGCTC
AGCTCCACGAAAGCTGGTCGGAATCTTTACTAGCTCGCGGTTTTTTCGGC
CAAGCTCAGGTGAAGAAGATGCAATACTGTACCAGGACCAGATTCAATTA
GGATGCTCGAGGTATTTAGAGAGAATATTCCCTTTAGTATTGTGAAATCG
AACCTCGTTTGTCAGCTCACCGCGTGTAAGTCTAGCCCGTCACTACGAAT
AAAATGAAAGAAGGCCTCTGTGTACAGCAGTAAGAAGAGCTGAACACGCC
AGAGTTAAGTTATTTATGCTCCAGAGTAGTATCGTACAACACGTGATGAT
AGTTATATCATACAGCAAGGTAATCCAGCCCTACAGTAGCTTACCGCCTA
GTTAAGGGGTGACTTTTTTTGTGGTCTGGCCAAGATGCAAGACAGATATA
CTCGAAAAATTCAAATAAAAAACTCAACCAAAAACAAATTCAGCAAGCAT
ACTGCCTGTAGAAGGCCCAAGGAGGACATCACGGTCTGAGAAGAAAAACA
AGTAAAAAGGTAGGAGGGATTTTACTTGGTATGGTGTCATACACGAAAAA
CGCACGACAAGAAGACGGAAAAGAAACCAAGAAAAAATGCAACGGCGTCC
ATTCATGTCGTTTGTTTGACCTGGCACCTTCTGCACAATAATCGTCAAAA
AGGTATATCGTTGCCCTTGCGTTTTGATAAAAAATATACTTCGAGTAAAC
ATATGCTGTACTCAAGTAACATCAAAGAAAAACGTTTTGTGTACAGGAAC
CCCGGCAAGTGCGCCCACTTCGTACCGAAAGGTGTAGACTGGTGCCTAGA
ATAAATGGGATGGGATAACACACACACCGCCGGTTGAAGGCACATCTCCC
GTGCGTGTAGACTGTACTACTACTGCAGAATACCACCAAACCATCAACGT
AATACTGCTGTATGCAACGTCGGACGGTACGCGTGCGTGCAGTGAGGGTT
CCTCGGGTACGCTACGAGTATATGTATGCTCAGTTGATGATACCGCTTTA
CAGCAAGTAGTGCGAGGAGAACTTCTCGTTTGAGTTGTCCCGTTTACCAC
CAACACGACCATCCGCGAGGAGATGGCGCAGAAAAAAACACACGGAATGC
AGTTTCCTGGGGCGGCGATTGACAGAAACGCCAACAATGCTTTCGATCTC
TTCAGCAGAACAGCTACTATTTACAACAAACCGAACAAAACCATACGCAG
GAGCACCTCGACCAAGCACTCCAAGCCTGGACCAGCTACGATGAGCCTGT
CCTCATGGCTCGCGCGTGGTGCCTTAAGGCATCTTGCAGCGGCGAAGCGG
GCGAGTTCTCCGCCGCCGCGGCCAGTTTCAAGGCCGCCCAAAAGCTCGCG
GAATCAGCGGGCGATGTCTCGCTAGTGCTGTGCATCCTGATCAACCGTGC
CATCTGCGAGATTCGGCTCGGGGATTGCAAAGCCGCCGCAACGCGCTCTC
GGCGCGCTTTTGTCAGGGCGGAGGCGGAGGGGGACCCGGAGATGACCCTC
AAGACGCTTTGTGTCAGGTAGTAAGTGGTCGTTGGTGAATCACGTGTTTG
AACACAGTGGAGATTAGTGAATACCCTCTCATCTCTCAGGCGAACGCGCG
GGAGAAAACTAAACGCGTCGTGAAGCCATTCAATACAAAACCTACTACAC
TGCTGTTGGCTCTACGTGTACTCGTCACGGATCTCTGCCCCTCTCTCTGC
CCCTGTCTCTCTCTTAGTCCCATTTTGTTTTCCATTTTGTATGTCTGTAT
CCCCATCTGTCTCTCTGTCTATATGTCTGCCTGTCTACGTATCTGTATGC
CTGCCTGTCTGTAGGTGCAGTTATTATTCTCATTGTGTCGGTCACTCCCA
CCAAGGCGCCTTTTTATTGCATGCGGCGTTAAAGGCCGGCACCAAATGCC
CTACTAAACGAATCCTACCCCAGAGCCTCGAGCTACCAAATGACGGGGAA
CTTCCTTGCAGCCTGCAACGAGCACGAAGCTGCAGCAAAACTTGTCAAGG
AAGGCCACGTTTTGCCGCCGGGACCTGACTTTTCTGTCGCCATGGACACA
AACTTCGGCATAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig666:94531..96695-

>mRNA_P-littoralis_Contig666.32.1 ID=mRNA_P-littoralis_Contig666.32.1|Name=mRNA_P-littoralis_Contig666.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig666:94531..96695- (Pylaiella littoralis U1_48)
ATGGAGCAAGAAGGATTCGGGGAAGATAGTGATGATGAGTTATCGGCGAT
GGCCTGGGCAGTGGCAATACGGGGGAAGAGCGGCCGAGAGATCGCTCAGC
TCCACGAAAGCTGGTCGGAATCTTTACTAGCTCGCGGTTTTTTCGGCCAA
GCTCAGGAGCACCTCGACCAAGCACTCCAAGCCTGGACCAGCTACGATGA
GCCTGTCCTCATGGCTCGCGCGTGGTGCCTTAAGGCATCTTGCAGCGGCG
AAGCGGGCGAGTTCTCCGCCGCCGCGGCCAGTTTCAAGGCCGCCCAAAAG
CTCGCGGAATCAGCGGGCGATGTCTCGCTAGTGCTGTGCATCCTGATCAA
CCGTGCCATCTGCGAGATTCGGCTCGGGGATTGCAAAGCCGCCGCAACGC
GCTCTCGGCGCGCTTTTGTCAGGGCGGAGGCGGAGGGGGACCCGGAGATG
ACCCTCAAGACGCTTTGTGTCAGGTAA
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