mRNA_P-littoralis_Contig666.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.12.1
Unique NamemRNA_P-littoralis_Contig666.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig666.12.1 vs. uniprot
Match: D7G7P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.500e-22
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 QGDIFEAKVLETSELPVSSDVAKSLEAVRTPIDEGGWACLFDVVSSVRTLLVHHQEVFQEQEREEVPRLLGVVVPLVATAVSHRRSVVQTNGLRCL 288
            QG+IF+   L +SE+P S DV+K LEAVR       WA LF  VSS RTL++HH+++F  +     P L+G +V LVA AVS+RRSVVQTNGLRCL
Sbjct:   33 QGEIFDVVALTSSEVPASVDVSKDLEAVRIRSGVTDWASLFAAVSSARTLVLHHRDMFGGENGG--PGLIGRLVSLVADAVSNRRSVVQTNGLRCL 126
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BLAST of mRNA_P-littoralis_Contig666.12.1 vs. uniprot
Match: D7G5Z1_ECTSI (TOG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.260e-22
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 QGDIFEAKVLETSELPVSSDVAKSLEAVRTPIDEGGWACLFDVVSSVRTLLVHHQEVFQEQEREEVPRLLGVVVPLVATAVSHRRSVVQTNGLRCL 288
            QG+IF+   L +SE+P S DV+K LEAVRT      WA LF  VSS RTL++HH+++F  ++    P L+G +V LVA AVS+RRSVVQTNGLRCL
Sbjct:  438 QGEIFDVVALTSSEVPASVDVSKDLEAVRTHSGVTDWASLFAAVSSARTLVLHHRDMFGGEDGG--PGLIGRLVSLVADAVSNRRSVVQTNGLRCL 531
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BLAST of mRNA_P-littoralis_Contig666.12.1 vs. uniprot
Match: D7FH72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH72_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 7.010e-21
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 QGDIFEAKVLETSELPVSSDVAKSLEAVRTPIDEGGWACLFDVVSSVRTLLVHHQEVFQEQEREEVPRLLGVVVPLVATAVSHRRSVVQTNGLRCL 288
            QG IF+   L++SE+P S D++K LEAVR       WA LF  VSS RTL++HH+++F  +     P L+G +V LVA AVS+RRSVVQTNGLRCL
Sbjct:  717 QGQIFDVVALKSSEVPASVDISKDLEAVRIRSGVTDWASLFAAVSSARTLVLHHRDMFGGENGG--PGLIGRLVSLVADAVSNRRSVVQTNGLRCL 810
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BLAST of mRNA_P-littoralis_Contig666.12.1 vs. uniprot
Match: A0A6H5K4X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4X8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 9.090e-18
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 QGDIFEAKVLETSELPVSSDVAKSLEAVRTPIDEGGWACLFDVVSSVRTLLVHHQEVFQEQEREEVPRLLGVVVPLVATAVSHRRSVVQTNGLRCL 288
            QG+IF+   L++SE+P S D  ++   V+       WA LF  VSS R LL+HH++VF  +   E P L+G +V LVA AVS+RRSVVQTNGLRCL
Sbjct:  687 QGEIFDVVALKSSEVPASVDAVQATVVVKD------WASLFAAVSSARVLLLHHRDVFGREY--EGPGLIGQLVSLVADAVSNRRSVVQTNGLRCL 774
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BLAST of mRNA_P-littoralis_Contig666.12.1 vs. uniprot
Match: A0A6H5JX13_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX13_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.980e-9
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  121 FDVVSSVRTLLVHHQEVFQEQEREEVPRLLGVVVPLVATAVSHRRSVVQTNGLRCL 288
            F  VSS RTLL+HH +  + ++    PRL+G +V LV  AVS+RRSVVQTNGLRCL
Sbjct:  411 FAAVSSARTLLLHHPDELEGEDGG--PRLIGRLVSLVVDAVSNRRSVVQTNGLRCL 464
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7P4_ECTSI3.500e-2255.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Z1_ECTSI4.260e-2256.25TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FH72_ECTSI7.010e-2154.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4X8_9PHAE9.090e-1851.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX13_9PHAE3.980e-958.93MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:28669..29401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42345.XP_008790738.1
PFAMsCLASP_N
Model size290
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000759
EggNOG OGsKOG2933@1|root,KOG2933@2759|Eukaryota,37PES@33090|Viridiplantae,3GC3X@35493|Streptophyta,3KU02@4447|Liliopsida
DescriptionCLASP N terminal
Cds size288
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791385.5796843-CDS-P-littoralis_Contig666:28668..287461680791385.5796843-CDS-P-littoralis_Contig666:28668..28746Pylaiella littoralis U1_48CDSP-littoralis_Contig666 28669..28746 +
1680791385.598552-CDS-P-littoralis_Contig666:29191..294011680791385.598552-CDS-P-littoralis_Contig666:29191..29401Pylaiella littoralis U1_48CDSP-littoralis_Contig666 29192..29401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.12.1prot_P-littoralis_Contig666.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 28669..29401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.12.1

>prot_P-littoralis_Contig666.12.1 ID=prot_P-littoralis_Contig666.12.1|Name=mRNA_P-littoralis_Contig666.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
QGDIFEAKVLETSELPVSSDVAKSLEAVRTPIDEGGWACLFDVVSSVRTL
LVHHQEVFQEQEREEVPRLLGVVVPLVATAVSHRRSVVQTNGLRCL
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mRNA from alignment at P-littoralis_Contig666:28669..29401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.12.1 ID=mRNA_P-littoralis_Contig666.12.1|Name=mRNA_P-littoralis_Contig666.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=733bp|location=Sequence derived from alignment at P-littoralis_Contig666:28669..29401+ (Pylaiella littoralis U1_48)
CAAGGGGATATCTTCGAGGCAAAGGTGCTGGAGACCAGCGAGCTGCCGGT
GTCGAGCGACGTGGCCAAGAGCCTCGAGGTGAGCGTGCGTCGATCAACAT
TCGGTGGTGCAGCTCGATTTGTTCTGGACCTCTGCGACTCTTGAGTTGGT
CTTTGCTCATCCAACCAACAGGGTCAACCAACAAATAATCCATCCCCCAA
AACGCCGGTTTTCAGTACGGAAGGGGGCACATACTCGCGTGAACACGTTG
CACGTTTGATCAATCTCCTCGTTGTTCCCGGCTGAGTGATTTATAATGCT
TGACACGGAAGTGCTGGAAACACTGCTCAGTCGACCATGCAGGCCGACAA
CGAGAGCGTATACGAGCCTATCCCGAATCAGTAGCTTCGCCGCCACATAA
CTGCCGCAACCTGGCAAACAACGTCACCTCGATCCACTAGTCTCGTTCGC
GTGCGTCTCGCGTGACACGTGGTGCTGCTTTGACTAGTCCATGCCTGCCA
ACTCGTCGCCGTGAATAACACAGGCTGTCCGTACGCCGATCGATGAGGGG
GGCTGGGCATGCCTGTTCGACGTCGTGAGCTCTGTCAGGACGCTCCTGGT
GCACCATCAGGAGGTCTTCCAAGAGCAGGAGAGGGAAGAGGTTCCCCGCT
TGCTTGGGGTGGTGGTGCCTCTGGTGGCGACCGCTGTGTCTCACAGGCGC
TCCGTGGTGCAGACGAACGGGTTGCGGTGCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig666:28669..29401+

>mRNA_P-littoralis_Contig666.12.1 ID=mRNA_P-littoralis_Contig666.12.1|Name=mRNA_P-littoralis_Contig666.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig666:28669..29401+ (Pylaiella littoralis U1_48)
CAAGGGGATATCTTCGAGGCAAAGGTGCTGGAGACCAGCGAGCTGCCGGT
GTCGAGCGACGTGGCCAAGAGCCTCGAGGCTGTCCGTACGCCGATCGATG
AGGGGGGCTGGGCATGCCTGTTCGACGTCGTGAGCTCTGTCAGGACGCTC
CTGGTGCACCATCAGGAGGTCTTCCAAGAGCAGGAGAGGGAAGAGGTTCC
CCGCTTGCTTGGGGTGGTGGTGCCTCTGGTGGCGACCGCTGTGTCTCACA
GGCGCTCCGTGGTGCAGACGAACGGGTTGCGGTGCTTG
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