mRNA_P-littoralis_Contig666.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.44.1
Unique NamemRNA_P-littoralis_Contig666.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:115582..119674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2588
Hectar predicted targeting categoryother localisation
Exons3
Cds size1302
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791385.1648962-UTR-P-littoralis_Contig666:115581..1156921680791385.1648962-UTR-P-littoralis_Contig666:115581..115692Pylaiella littoralis U1_48UTRP-littoralis_Contig666 115582..115692 +
1680791385.21487-UTR-P-littoralis_Contig666:118499..1196741680791385.21487-UTR-P-littoralis_Contig666:118499..119674Pylaiella littoralis U1_48UTRP-littoralis_Contig666 118500..119674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791385.1796389-CDS-P-littoralis_Contig666:115692..1164431680791385.1796389-CDS-P-littoralis_Contig666:115692..116443Pylaiella littoralis U1_48CDSP-littoralis_Contig666 115693..116443 +
1680791385.189123-CDS-P-littoralis_Contig666:117591..1179331680791385.189123-CDS-P-littoralis_Contig666:117591..117933Pylaiella littoralis U1_48CDSP-littoralis_Contig666 117592..117933 +
1680791385.2036922-CDS-P-littoralis_Contig666:118290..1184991680791385.2036922-CDS-P-littoralis_Contig666:118290..118499Pylaiella littoralis U1_48CDSP-littoralis_Contig666 118291..118499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.44.1prot_P-littoralis_Contig666.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 115693..118499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.44.1

>prot_P-littoralis_Contig666.44.1 ID=prot_P-littoralis_Contig666.44.1|Name=mRNA_P-littoralis_Contig666.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=434bp
MDSPGDVSTRRAVTPSKASDDVVIGAAAVSTPNPGFGGAGVEMIDVSSPD
PASFSFARQTRYPPALSTKPKSTRKVGNLFSGGSTAASAGASIDNRLGNS
IRKSTSSASAARGAPGGSYCSSWHDDPDNDIRSPGKDAAQTWDSQSGGGS
SDSAGLGFTSPVRKSRPGAASSRFTPQRNLVALFASPLPLPPPTQTLLSL
PSDREDGAVVATTLPAPATAADPVKVPDSTNVRDSPPLLLLPPEREEMGA
DEAVSNRPEENEAPARAPAPAAEAAATLTATAVELPLLRAAEAGAAVSPA
PAVAAASAAMSAAVEDPAHECRCGCSSSGATGTGCDDVCCVSNEAFKDGK
AMRTLEVLVKRERIGVSALASWRVSELKRRLVHMKLFPAPEVITLVPTFP
VAGGAALEDDVTLDTLDIDVTYKARRTAVTAAT*
back to top

mRNA from alignment at P-littoralis_Contig666:115582..119674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.44.1 ID=mRNA_P-littoralis_Contig666.44.1|Name=mRNA_P-littoralis_Contig666.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4093bp|location=Sequence derived from alignment at P-littoralis_Contig666:115582..119674+ (Pylaiella littoralis U1_48)
GGCGCCAAATTTTCAAATTCATGTGGTGCACCAATACACAGGACACATCT
GATCAGATTGTTGTCGCGCATCGCGCACTTTGTTCATCGCACCGCAGCAA
AAACACACACAATGGATTCACCAGGTGACGTCTCGACACGGCGGGCAGTC
ACCCCTTCCAAGGCGAGCGACGATGTGGTGATTGGCGCAGCAGCTGTCTC
CACACCCAATCCTGGTTTTGGCGGTGCTGGCGTCGAGATGATCGACGTCT
CGTCTCCCGACCCTGCTTCGTTCTCGTTCGCGCGACAAACGAGATACCCC
CCGGCACTATCGACTAAGCCGAAGAGCACCCGCAAGGTAGGCAACCTCTT
CAGCGGCGGTAGTACAGCGGCCTCAGCCGGTGCCTCCATCGACAATAGAC
TTGGGAATAGTATCAGAAAATCGACATCGTCAGCATCAGCAGCACGAGGA
GCACCGGGCGGATCGTATTGTTCTAGCTGGCACGACGATCCTGATAATGA
TATTCGAAGCCCGGGGAAAGACGCAGCTCAGACGTGGGACAGCCAGAGCG
GGGGCGGCAGCAGCGACAGCGCCGGGTTGGGGTTCACCTCCCCTGTGCGG
AAGTCAAGGCCTGGTGCCGCAAGCAGTAGGTTCACGCCGCAGCGTAATCT
GGTCGCGCTCTTTGCGTCGCCCCTGCCGCTGCCACCGCCAACCCAAACGC
TGCTCTCTCTACCCAGCGACCGAGAAGATGGAGCCGTTGTAGCCACGACT
CTACCTGCTCCTGCGACGGCTGCCGATCCCGTGAAAGTGCCCGATTCGAC
GAACGTGAGGGACTCGCCCCCCTTACTGCTGTTGCCGCCGGAACGGGAAG
AAATGGGAGCAGGTGAGTTCGCGAATAATGAGAATGATATACATGTGTGT
ATCGCTGCTGTGTCTGTGAACCTGCCGCTGTGTGTGTTGGTTGCCTTCTC
CTGGAGGTATACTGCTGTATACGTAAGATACCACACCCCCTGGACCGAAA
TTGAAGCTTTTTGATTACCGTATTCTACACAAGATACCACACCCCGTGTT
AGGTTTTTTGCATTCCGTATTGCTCCACAACCAGGAGGGTGCGAACACCA
AACAGCCCGTCATACGAAAGCTCTCGACGAGATCTTTCCAAAACCACCCT
TTTCGGCAGTGGCACCCTCCTGGTTGTGGAGCTATACGGAATGCAAAAAG
CTTAACACGGGGTGTGGTATCTTGTGTAGAATACGGTACTCCCCAACAAG
CAGAAAGAAGAGTGTCAGTGCCGACAAGGGCGGCGTTGGAACCATCCTAA
TACCGTCGAGAGCTTTCCAAACACGCAATCATCGTTTGATATTGACGTAT
TGACACCCTCTTCGTTGTGGAGTACTGAAATTGACTACTGTGGTACGTAA
AAGAGCGGTAAAAAATAAAAAATAGGCACCTTAGATCCTTAGATGGATCT
CATTTGACCCATTCCTGACTGCTGTATGTCTACGGTCACCGATTGTTCTG
TCTGGTTGACGATATTTTTGTGTCAATACGACGCCTTTTTGGGTTAGACT
CCCGGTGTCCCACTCGTTTGCAGCTGCGCAAGTTCACGAAGGTCCGTTTT
ATGCGGGTCGAGCCGAGCCACGTTGTATTTTGGCAAAACTCCCTCAATGC
TGGATATATCAACCTTGAACCACAGCTGCTGTTGTAATTGCAGTATCGCA
GAAAGCTAGGGGCCCAGCTCATCCAACTTTATTTTTTCTCCGCCTTCCAT
CTTTTTCGATTTCTTCCTCCGTCTCCCGTCTTGTTGATTTCTCTCCCCGT
CTTTGTCTGTCGCTGTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTATCCCTCCCCCTCTCTCTCCATTGCA
TGTATGTACTTGTTTTGTCTTTCTGCGCAATCGACTGCGGTTAATATTTC
ACCCCAGCAGACGAAGCAGTCTCTAATCGACCCGAGGAAAATGAAGCACC
AGCACGAGCACCAGCACCAGCGGCTGAAGCAGCGGCAACGTTAACGGCAA
CGGCGGTGGAGCTACCATTATTGCGAGCTGCAGAAGCAGGAGCAGCAGTA
TCACCAGCCCCGGCGGTGGCGGCGGCATCAGCAGCGATGTCGGCAGCCGT
GGAAGACCCTGCCCATGAGTGCCGGTGTGGCTGCTCCTCGTCGGGGGCGA
CGGGTACGGGCTGTGACGATGTATGCTGTGTCTCGAACGAAGCTTTCAAG
GACGGCAAGGCCATGCGCACGCTGGAGGTTCTCGTCAAGCGGGAGCGCAT
AGGTGAGAGGCAAGGGAGAGAGAGAGAGAGAGGAGACCGCAGAGAAAGAG
AAAGAGAGGGAAAAAAGGAAAAATGCAACTTGGAGGTTGGATCGAGAATA
GGGGAGGGGGGGTTACAGCAGTAGGTCTGGAGAGAGAGTGGGGGATGTTG
TCTACGAAGGCGAGAGACAAGTTTGAATCCAGCCACGAGGTGGTGCCAGG
AGTTGGGCTTTACGTGTCCTCCCTGAGACTACTGCTGTGAGTTGTACAGT
GCACACCAAGGCTACACTTGCGATATCCTTGCCTTGCGAATAAGGTGTGC
GCTAACTTTACTGACAACGAATCCCCCGCCACCGCCGCGCCTCGCTCAAC
AACGAACAGGTGTGAGCGCCCTCGCGTCTTGGAGAGTGTCAGAGCTCAAG
AGACGTCTGGTGCACATGAAGCTCTTCCCCGCCCCGGAAGTAATCACCCT
GGTGCCCACGTTCCCGGTGGCCGGCGGCGCGGCCCTGGAGGACGACGTCA
CACTGGACACGCTCGACATCGACGTGACGTACAAAGCTCGCCGGACTGCC
GTCACAGCAGCGACCTGAGAAGTACGACGAGTGGGTGGATGGGTTCACGA
AATCTCGTCACGGGCTCTATCGTTCTTTCTTATTTTTGCTGATGATTCTC
GTGCGGCCTACTGCTTGTGGTTGTATATTGTGGGCGTACGCGATCGCAGT
AATATTCTGGGTCTTGTTGTAAGCTACACTTGAAAGTATTTGTTTATTTT
TCGGTGCGCGCGGGCGGGGCTTTTGTGGAGCCCTTTGGCTCGGTTTTGGG
TGTTTGATTGTCCATATATATACGGCGGGTTGTAGTGGAGGTCTGCCCGC
TTTGTTTAGCTGGTTTTACTTTTTTTGTATCGCTGCTGTGTGCAGCGCTA
AGTTCGAGGCTACAGCAATAGCAGTGCATTTACGCTGCAGCAGTAGTAGG
CCGGGTCGCTGTTGGTTGTCTCACGCAGCCTCGGTGAAATGAGTACCTGG
TAGGTGTTTTTGTTTTTGCCCCTGGTTCGTTTTTGAGGACTATCGTAGGC
TTGAGCGAAAGCACTTGAGCTGTATACGAAGTCGTCAAATAGGACGGGTG
TTGATGAGACGGGTGTTGCTCAGACCGCGTGTCACCAGAAGGGCTGAGAA
ACAGAGGTTACATCATAGTCTTGTGGAAGCGGCGCGTCCGCGGCACACGA
AAAGTCACGACCGTGGAGCCCGTGCGCTTCAGATCGACACGGGCATGGTT
ATTTCTGCTCTCGTAAGGACGTTTTACTGTTGCGTCATAGTACACAGTAT
TGATAGTCGGTCAAGTAGACGATGTTCTCCACCCGATAGGTGATGTAGTG
TGTGTATGACTAGTCGAGTTTTCCCCGGTTGGAAAATGCCTCGCGCGGCA
AATCTATGGTTGTTTGGTGCCTAAACGCATGTAGTGCTGCAGTAGGTTTA
AATGCAGTATTGTGGTGAGTTTAAAAGTATTTGAAGGTGTTCTTTCGTGG
GAGCTCAATGGTTTCGCTAGTGACTCCGCTCTAAAATCCTGTACTGCGCG
GTGTAATATGTGATGGACAGCGGTCTTGGACATGGTTGTGTATAATATCG
GGGAAAATGATGTTTTCCAACAAAGTCAGCAAGCCGCTCCGTCAGCGCGA
AGATAACGGTCCTGAACGTCGACCCCTCCTTATCCCGTAGCATGATACCG
CTCCCACACCTTTGCTTTCAACCGACGACAGCACAAACCGACT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig666:115582..119674+

>mRNA_P-littoralis_Contig666.44.1 ID=mRNA_P-littoralis_Contig666.44.1|Name=mRNA_P-littoralis_Contig666.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1302bp|location=Sequence derived from alignment at P-littoralis_Contig666:115582..119674+ (Pylaiella littoralis U1_48)
ATGGATTCACCAGGTGACGTCTCGACACGGCGGGCAGTCACCCCTTCCAA
GGCGAGCGACGATGTGGTGATTGGCGCAGCAGCTGTCTCCACACCCAATC
CTGGTTTTGGCGGTGCTGGCGTCGAGATGATCGACGTCTCGTCTCCCGAC
CCTGCTTCGTTCTCGTTCGCGCGACAAACGAGATACCCCCCGGCACTATC
GACTAAGCCGAAGAGCACCCGCAAGGTAGGCAACCTCTTCAGCGGCGGTA
GTACAGCGGCCTCAGCCGGTGCCTCCATCGACAATAGACTTGGGAATAGT
ATCAGAAAATCGACATCGTCAGCATCAGCAGCACGAGGAGCACCGGGCGG
ATCGTATTGTTCTAGCTGGCACGACGATCCTGATAATGATATTCGAAGCC
CGGGGAAAGACGCAGCTCAGACGTGGGACAGCCAGAGCGGGGGCGGCAGC
AGCGACAGCGCCGGGTTGGGGTTCACCTCCCCTGTGCGGAAGTCAAGGCC
TGGTGCCGCAAGCAGTAGGTTCACGCCGCAGCGTAATCTGGTCGCGCTCT
TTGCGTCGCCCCTGCCGCTGCCACCGCCAACCCAAACGCTGCTCTCTCTA
CCCAGCGACCGAGAAGATGGAGCCGTTGTAGCCACGACTCTACCTGCTCC
TGCGACGGCTGCCGATCCCGTGAAAGTGCCCGATTCGACGAACGTGAGGG
ACTCGCCCCCCTTACTGCTGTTGCCGCCGGAACGGGAAGAAATGGGAGCA
GACGAAGCAGTCTCTAATCGACCCGAGGAAAATGAAGCACCAGCACGAGC
ACCAGCACCAGCGGCTGAAGCAGCGGCAACGTTAACGGCAACGGCGGTGG
AGCTACCATTATTGCGAGCTGCAGAAGCAGGAGCAGCAGTATCACCAGCC
CCGGCGGTGGCGGCGGCATCAGCAGCGATGTCGGCAGCCGTGGAAGACCC
TGCCCATGAGTGCCGGTGTGGCTGCTCCTCGTCGGGGGCGACGGGTACGG
GCTGTGACGATGTATGCTGTGTCTCGAACGAAGCTTTCAAGGACGGCAAG
GCCATGCGCACGCTGGAGGTTCTCGTCAAGCGGGAGCGCATAGGTGTGAG
CGCCCTCGCGTCTTGGAGAGTGTCAGAGCTCAAGAGACGTCTGGTGCACA
TGAAGCTCTTCCCCGCCCCGGAAGTAATCACCCTGGTGCCCACGTTCCCG
GTGGCCGGCGGCGCGGCCCTGGAGGACGACGTCACACTGGACACGCTCGA
CATCGACGTGACGTACAAAGCTCGCCGGACTGCCGTCACAGCAGCGACCT
GA
back to top