mRNA_P-littoralis_Contig666.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.16.1
Unique NamemRNA_P-littoralis_Contig666.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:43573..45878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size416
Hectar predicted targeting categoryother localisation
Exons3
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791385.0999057-CDS-P-littoralis_Contig666:43572..437671680791385.0999057-CDS-P-littoralis_Contig666:43572..43767Pylaiella littoralis U1_48CDSP-littoralis_Contig666 43573..43767 +
1680791385.1180246-CDS-P-littoralis_Contig666:45020..450891680791385.1180246-CDS-P-littoralis_Contig666:45020..45089Pylaiella littoralis U1_48CDSP-littoralis_Contig666 45021..45089 +
1680791385.132181-CDS-P-littoralis_Contig666:45727..458771680791385.132181-CDS-P-littoralis_Contig666:45727..45877Pylaiella littoralis U1_48CDSP-littoralis_Contig666 45728..45877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.16.1prot_P-littoralis_Contig666.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 43573..45877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.16.1

>prot_P-littoralis_Contig666.16.1 ID=prot_P-littoralis_Contig666.16.1|Name=mRNA_P-littoralis_Contig666.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
EQKEQEFPTRGDEITIDGVVTGVSAVEVGAMAQDSPLTARNDTRRRDPAP
QCGDCGKARDDRDSLIMASLGLLHQKMDTGFANLAAKQNKLEKDFERFRC
SSPYRPTAYTGTGGGGGHNERSTGSVDNLATPPATEGE
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mRNA from alignment at P-littoralis_Contig666:43573..45878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.16.1 ID=mRNA_P-littoralis_Contig666.16.1|Name=mRNA_P-littoralis_Contig666.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2306bp|location=Sequence derived from alignment at P-littoralis_Contig666:43573..45878+ (Pylaiella littoralis U1_48)
GAACAGAAGGAGCAAGAGTTTCCTACCCGTGGTGACGAGATCACGATTGA
CGGCGTAGTTACGGGGGTGTCAGCGGTGGAGGTAGGGGCAATGGCCCAAG
ACTCCCCCCTCACCGCGAGGAATGACACGCGGAGGCGGGACCCCGCGCCG
CAGTGCGGAGATTGCGGGAAAGCAAGGGATGACCGCGATTCTCTGGTGAG
CACAGGCAGCGTTGTTTTGGGCAGTGGTTATCTTTTGTCCGAGTGGATAT
TCAGCTGCCCGGTAGAACGTGTTTGATGACTCTATATTGGCTTCTTATTT
CGCCGCGCCTATCATTCCCAAGCCTGTCTTCACTCAATCCCCCACGCACA
CAGAACGTCGGGGAGCAAGAGCTGCGACGGCGTGTGATGCCGCATTTGAT
CCATTCTTCGGACAGGGTTTGTTCCTGAATATCCTTCTTGTCCACATCCA
GCGAGGAGAACATCGTCGACCACGCTGGTGATGCCCGACAACAACTTTTC
CCTTGCACACTAGAGTATTCAGCACTCCCCCACCCCCCTCGAACCGCGCC
AATCGAACTATTTGACCAATAATATCGCAAAAATGGAGGCAGCCATTCAA
TGAGGACCCCCCCCCACTTGACCCTAGTCATAGCCTGCCTCGCAAGCGGA
TCTTGCGGAGCAGCTTGCCGTGCATGCAAGTCACGGGCCACCTCATGACG
CTGTGGTTGGTACTATGCCACGTGATGGATAATCCGTACGGGGTGGAGCT
GGGCCGAATCCGGCCGGGATATGTTTTGGGCAATGTGTACCCTGAGTGTG
TGACTCGATGTTACTTCGCTGTTTGAGCGGGATGCTTCGCTGTGTGAGCG
GGATGCTTCGCTGTGTGAACGGGAAAAACGTGATTGATTATTGATGCGTC
GCCCAAAAGAAAGGGGGTACACATAAATACTCCATGATACTCCCATGGTA
CCCTCATTCCACAAAATTCTCAAACGTACCCTGTACCATACTCAACCAAA
TGTCCGTTTCTCTCAATCAATTCGAAATAATCGCATACTGCTGCGAGTAC
ATCCAACACCACGCGTGTTACAGATCTCCGTACTCCACCCCACCGTTGGA
GTAGGGTGAAAATCGTGTCGCAGTTGAGAAGAGCATGCCTGTGTGTACGG
CTGGGCGTACACCACCGGTTGAACTTTCCTATTCCATTTCCAACCCCCCC
GCTCCCCACAGGTTCAAGACACCTCCGAAGGGGTTACAAAAACTTGTAGA
CGCAGCACTTTACCTCGCTCTCCTCGGGGAGAACAAATCCCACACAAACA
AACGCTGGTTACCTATCGCGAGAGGAAATGCGAGACTTGTAGCAGTGTCT
CCACGTGTATGCTCTTGCATAGCATATGTGTCGGATGTTTTAACCCCCAT
CGCCCCTGACCATCTCCCGTGCGCGTGCTTCTTGCCTGTCAAATCCAGAT
CATGGCCAGCTTGGGGCTGCTGCATCAGAAGATGGATACGGGCTTTGCAA
ACCTTGCGGCAAAGCAGGTACGGGTACTGGGGGGGGGGGCTATTCCTGCC
GTGTTTCGCGAGGGAAGCAAAAACAAAACGACTCCCTTTTGCATGTCTTG
TTCGTTAGAACGACTCGTACATTGTTTTTGGGTTGCAATATTGTATATTC
AGTGCGTGTGAAGTGTGCCGCCGGGCAAAGACAAGTCAGCCCCCACGCCC
CTCCCCCTAAATTTGTTACATACCATGGTATGCAAACTTCGGGAAGAATT
CAAGGTGTGACAGACGCAGGAAACGTTTGAGATTATACCTCTCAGTTGTA
GGCGGCAAACAGTCAAGACAAACCTGTAGAGCACATTCTGGTTGAAGGGT
ACACCCCAGTCTTCGGGTTCTTGCCCGCCGTCGAGGAACGTCTCGTGTGC
AAATTTTCCAAGCGCCTTCTTTCCCGCATTGGCTTTGCGTACTTCTGGTC
GGTGGGGTGCAACAGTCCGAGTAGTCCTTCCAATAGCCACAGTGAAAGGG
TGGTATCGATCAGGCAGCTCTACTGATGCGCAGCGCGCATCCTTTCGAGT
TGCACGATACTTGCGCGTGCTGCGTGCCGTTCTTGGATCTCTGATGTGGA
TCCCTACGAGTCTTCGCCCACTTACATACTCAAATCAACGTGTTTTGTTG
GTCAGAACAAGCTTGAGAAGGACTTCGAGCGCTTCCGCTGCTCCTCGCCT
TACCGTCCAACTGCGTACACGGGAACGGGTGGCGGCGGTGGACACAATGA
GCGGTCGACTGGATCTGTAGATAATCTGGCCACACCTCCGGCAACCGAGG
GCGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig666:43573..45878+

>mRNA_P-littoralis_Contig666.16.1 ID=mRNA_P-littoralis_Contig666.16.1|Name=mRNA_P-littoralis_Contig666.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig666:43573..45878+ (Pylaiella littoralis U1_48)
GAACAGAAGGAGCAAGAGTTTCCTACCCGTGGTGACGAGATCACGATTGA
CGGCGTAGTTACGGGGGTGTCAGCGGTGGAGGTAGGGGCAATGGCCCAAG
ACTCCCCCCTCACCGCGAGGAATGACACGCGGAGGCGGGACCCCGCGCCG
CAGTGCGGAGATTGCGGGAAAGCAAGGGATGACCGCGATTCTCTGATCAT
GGCCAGCTTGGGGCTGCTGCATCAGAAGATGGATACGGGCTTTGCAAACC
TTGCGGCAAAGCAGAACAAGCTTGAGAAGGACTTCGAGCGCTTCCGCTGC
TCCTCGCCTTACCGTCCAACTGCGTACACGGGAACGGGTGGCGGCGGTGG
ACACAATGAGCGGTCGACTGGATCTGTAGATAATCTGGCCACACCTCCGG
CAACCGAGGGCGAA
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