mRNA_P-littoralis_Contig664.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig664.26.1
Unique NamemRNA_P-littoralis_Contig664.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig664.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig664contigP-littoralis_Contig664:150249..150989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size741
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.7534077-UTR-P-littoralis_Contig664:150248..1504101680791384.7534077-UTR-P-littoralis_Contig664:150248..150410Pylaiella littoralis U1_48UTRP-littoralis_Contig664 150249..150410 +
1680791384.7767994-UTR-P-littoralis_Contig664:150860..1509891680791384.7767994-UTR-P-littoralis_Contig664:150860..150989Pylaiella littoralis U1_48UTRP-littoralis_Contig664 150861..150989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.7659981-CDS-P-littoralis_Contig664:150410..1508601680791384.7659981-CDS-P-littoralis_Contig664:150410..150860Pylaiella littoralis U1_48CDSP-littoralis_Contig664 150411..150860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig664.26.1prot_P-littoralis_Contig664.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig664 150411..150860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig664.26.1

>prot_P-littoralis_Contig664.26.1 ID=prot_P-littoralis_Contig664.26.1|Name=mRNA_P-littoralis_Contig664.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
MFNVRELGADDEQFVVIGDKGMMKVTAIGSLFLKFMFLREGDDTVHTVET
QIDNVLVVPGIGFNLFSGWRASVEGAAVALHRDGTHISNGKLIFMRGRSN
DYAYAIRLPPPVQRANISLTSVPRVPLFPSPRMRVLCRVMFRVHSPLPP*
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mRNA from alignment at P-littoralis_Contig664:150249..150989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig664.26.1 ID=mRNA_P-littoralis_Contig664.26.1|Name=mRNA_P-littoralis_Contig664.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=741bp|location=Sequence derived from alignment at P-littoralis_Contig664:150249..150989+ (Pylaiella littoralis U1_48)
AGTGTGCATAGAGGCAAGTGTGATTCTGGTTCTGAGCGTGCAAATGTTCT
GGGAAGTTATGCGTTGGTGTGCTCGAGTAGGCGTATCCCTCAACCCCCTG
GCAGTGAGAAATGGGAGTCTGACACGGGTGCCAGTGCTTTCATCACATTT
AACAGAGAGAAGATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCA
GTTTGTCGTGATCGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAA
GTTTGTTCCTGAAATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCAC
ACGGTTGAGACACAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATT
CAATTTGTTTTCAGGATGGAGGGCTTCTGTAGAGGGGGCAGCTGTTGCGC
TTCACAGGGATGGTACTCACATCTCAAATGGCAAACTCATCTTCATGCGT
GGGCGATCAAATGACTACGCATATGCCATTCGACTTCCCCCTCCCGTTCA
GCGTGCTAACATCTCCCTCACAAGTGTCCCCCGAGTGCCCCTCTTCCCTT
CCCCCCGAATGAGAGTGCTGTGTCGAGTGATGTTCCGAGTGCATTCTCCC
CTTCCCCCCTAGCTGCGGCAGGACCAAATATTGACAAGTCTTTGTGTGTG
GAGGCTTTCCCTGGTATGACTCTGGGACCCGAGGTGGAGAGTGTGCTGTC
AGATACGAGAGTGAACAGAGGATGTGATTCGAGTGACGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig664:150249..150989+

>mRNA_P-littoralis_Contig664.26.1 ID=mRNA_P-littoralis_Contig664.26.1|Name=mRNA_P-littoralis_Contig664.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig664:150249..150989+ (Pylaiella littoralis U1_48)
ATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCAGTTTGTCGTGAT
CGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAAGTTTGTTCCTGA
AATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCACACGGTTGAGACA
CAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATTCAATTTGTTTTC
AGGATGGAGGGCTTCTGTAGAGGGGGCAGCTGTTGCGCTTCACAGGGATG
GTACTCACATCTCAAATGGCAAACTCATCTTCATGCGTGGGCGATCAAAT
GACTACGCATATGCCATTCGACTTCCCCCTCCCGTTCAGCGTGCTAACAT
CTCCCTCACAAGTGTCCCCCGAGTGCCCCTCTTCCCTTCCCCCCGAATGA
GAGTGCTGTGTCGAGTGATGTTCCGAGTGCATTCTCCCCTTCCCCCCTAG
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