mRNA_P-littoralis_Contig664.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig664.1.1
Unique NamemRNA_P-littoralis_Contig664.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig664.1.1 vs. uniprot
Match: A0A6H5K395_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K395_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.180e-15
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:  187 VVPADVEEAVKREIESATGSRLAQVEGALLELSRKQAELESREKQFNETSSSLVVGITNANTTAATAATAPVPVPDGEKAGEALVASSG 453
            +V  DVEE VKREIESATGSRLAQVEGAL ELSRKQAELESREKQ +E + +   G     T AAT + A   V  G +AG  +V+  G
Sbjct:   51 MVSTDVEEVVKREIESATGSRLAQVEGALRELSRKQAELESREKQLDEANGTSSAGALALVTNAATTSGASSSVATGAEAGGLVVSQGG 139
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BLAST of mRNA_P-littoralis_Contig664.1.1 vs. uniprot
Match: D8LMB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.470e-12
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:  187 VVPADVEEAVKREIESATGSRLAQVEGALLELSRKQAELESREKQFNE 330
            +V  DVEE VKREIESATGSRLAQVEGAL ELSRKQAELESREKQ +E
Sbjct: 1508 MVSTDVEEVVKREIESATGSRLAQVEGALRELSRKQAELESREKQLDE 1555
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig664.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K395_9PHAE2.180e-1559.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMB7_ECTSI1.470e-1285.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig664contigP-littoralis_Contig664:2100..2926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMB7
Preferred nameWAC
PFAMsWW
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K16743,ko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
Exons2
Evalue2.41e-13
EggNOG OGsCOG5104@1|root,KOG0152@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
Cds size459
COG categoryA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.5523577-CDS-P-littoralis_Contig664:2099..23571680791384.5523577-CDS-P-littoralis_Contig664:2099..2357Pylaiella littoralis U1_48CDSP-littoralis_Contig664 2100..2357 +
1680791384.567824-CDS-P-littoralis_Contig664:2723..29241680791384.567824-CDS-P-littoralis_Contig664:2723..2924Pylaiella littoralis U1_48CDSP-littoralis_Contig664 2724..2924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig664.1.1prot_P-littoralis_Contig664.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig664 2100..2924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig664.1.1

>prot_P-littoralis_Contig664.1.1 ID=prot_P-littoralis_Contig664.1.1|Name=mRNA_P-littoralis_Contig664.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
QDDELDFDDEEDDYDSGTNAEAGGRGDGSGTGSRPKSTGTAHSSSSSSRG
MFSGVGAGAGMLVVPADVEEAVKREIESATGSRLAQVEGALLELSRKQAE
LESREKQFNETSSSLVVGITNANTTAATAATAPVPVPDGEKAGEALVASS
GVG
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mRNA from alignment at P-littoralis_Contig664:2100..2926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig664.1.1 ID=mRNA_P-littoralis_Contig664.1.1|Name=mRNA_P-littoralis_Contig664.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=827bp|location=Sequence derived from alignment at P-littoralis_Contig664:2100..2926+ (Pylaiella littoralis U1_48)
CAGGACGACGAGTTAGACTTCGACGATGAAGAGGATGACTACGACAGTGG
AACAAATGCAGAGGCGGGTGGGCGTGGGGATGGCAGCGGTACCGGTAGCC
GACCAAAGTCGACGGGAACTGCCCACAGCAGCAGCAGCAGCAGTAGAGGG
ATGTTCTCAGGGGTCGGAGCAGGAGCAGGAATGCTAGTGGTACCGGCGGA
TGTGGAGGAGGCGGTGAAGAGAGAGATCGAATCGGCAACCGGCTCACGCT
TGGCGCAAGTGAGCTTGGCTTCATTTCTGTTTAATTAAGCTGTGTAGGTT
GTGTTTTATTCTGTTTTTTTGTTGATTTCGAGTGTTCGGTTTCGCTGTTT
TTGGATTTGTTCCGTTCGTTTGTTGTCATTGAAAAATGTTTGTTGGCTTC
ACGGCTATGCATGCTTGTTGGTTTTGTGTGCTGCAGTCCTCTCACGCCCA
TCACCCGTTGTATCCCATCAAATACCCAAAATATGCAGAGCGTTACGCCC
TTGAGAGCTATGCAGGATGCGAGACTCATTCGCTCCTCATCACGCTCTCA
AACTTGGGGGACAATGTAAGCCCTCCCCCACACGCCCTCTCCCAACGGTC
TGTAAATATAATCCCGCACGCAAGGTGGAAGGAGCTCTCCTGGAGCTGTC
CAGAAAGCAAGCGGAGCTAGAGAGCAGGGAAAAACAGTTCAACGAGACGT
CGAGCTCCCTCGTGGTGGGCATAACAAACGCCAACACCACAGCAGCAACA
GCAGCAACAGCACCAGTACCAGTACCAGACGGCGAAAAGGCTGGGGAGGC
GCTCGTGGCCTCAAGCGGGGTCGGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig664:2100..2926+

>mRNA_P-littoralis_Contig664.1.1 ID=mRNA_P-littoralis_Contig664.1.1|Name=mRNA_P-littoralis_Contig664.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig664:2100..2926+ (Pylaiella littoralis U1_48)
CAGGACGACGAGTTAGACTTCGACGATGAAGAGGATGACTACGACAGTGG
AACAAATGCAGAGGCGGGTGGGCGTGGGGATGGCAGCGGTACCGGTAGCC
GACCAAAGTCGACGGGAACTGCCCACAGCAGCAGCAGCAGCAGTAGAGGG
ATGTTCTCAGGGGTCGGAGCAGGAGCAGGAATGCTAGTGGTACCGGCGGA
TGTGGAGGAGGCGGTGAAGAGAGAGATCGAATCGGCAACCGGCTCACGCT
TGGCGCAAGTGGAAGGAGCTCTCCTGGAGCTGTCCAGAAAGCAAGCGGAG
CTAGAGAGCAGGGAAAAACAGTTCAACGAGACGTCGAGCTCCCTCGTGGT
GGGCATAACAAACGCCAACACCACAGCAGCAACAGCAGCAACAGCACCAG
TACCAGTACCAGACGGCGAAAAGGCTGGGGAGGCGCTCGTGGCCTCAAGC
GGGGTCGGC
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