mRNA_P-littoralis_Contig663.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig663.12.1
Unique NamemRNA_P-littoralis_Contig663.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig663.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig663contigP-littoralis_Contig663:25738..27579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size595
Hectar predicted targeting categoryother localisation
Exons4
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791383.8652852-CDS-P-littoralis_Contig663:25738..258941680791383.8652852-CDS-P-littoralis_Contig663:25738..25894Pylaiella littoralis U1_48CDSP-littoralis_Contig663 25739..25894 -
1680791383.8768666-CDS-P-littoralis_Contig663:26251..263741680791383.8768666-CDS-P-littoralis_Contig663:26251..26374Pylaiella littoralis U1_48CDSP-littoralis_Contig663 26252..26374 -
1680791383.890811-CDS-P-littoralis_Contig663:26848..270271680791383.890811-CDS-P-littoralis_Contig663:26848..27027Pylaiella littoralis U1_48CDSP-littoralis_Contig663 26849..27027 -
1680791383.9025605-CDS-P-littoralis_Contig663:27443..275791680791383.9025605-CDS-P-littoralis_Contig663:27443..27579Pylaiella littoralis U1_48CDSP-littoralis_Contig663 27444..27579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig663.12.1prot_P-littoralis_Contig663.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig663 25739..27579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig663.12.1

>prot_P-littoralis_Contig663.12.1 ID=prot_P-littoralis_Contig663.12.1|Name=mRNA_P-littoralis_Contig663.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp
LPFLHGITSHPAWKTPAIVDQHAVVKAAYLLYKEGGGELNKAQFFERLVR
SVIPMKSTLNHDFHEVLGNNTKGAVRKGAENLLKAGEPITSETIFPAARR
VFRNQHSKVEEMVGNMVMERTVNPARHCRGTPARSPEDRVPMRTIEVAVP
MQAFMMNDLRCNLLAEVETLRNATRANDDGGVDDGEDPVGFRAARVLV
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mRNA from alignment at P-littoralis_Contig663:25738..27579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig663.12.1 ID=mRNA_P-littoralis_Contig663.12.1|Name=mRNA_P-littoralis_Contig663.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1842bp|location=Sequence derived from alignment at P-littoralis_Contig663:25738..27579- (Pylaiella littoralis U1_48)
CTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTGC
CATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAGG
AGGGCGGTGGCGAGCTCAACAAAGCTCAATTTTTCGGTAAGAACTTTTAA
TAACCTTTCAGAGCAACATGACCTGCTTTGTGCAGCCATGGATTGCACTT
ATTCTCAAAGCTTGCTGTGAAGTTTGGTGCTTCCCGGGAAGACGTGTGGC
ACATCCTCGATAAGGAGTGTGTAGCAAGGCCTACACGACGAGAAGACAAG
CTTTGCTTTCGCCCCCCCCAGCACACACACGCATTTCAAGAAACTTTGGT
GGATTTCGCAGAGGGTGTTTGGGTGAACTCACAAATTTGGAGGTTTTTTT
TTTTTTTTTTTTTTCAACCCATCAATCGGTCGGCCCTGTATTACTTCGCA
CAGCCGCTTTCAGTAAGTAAGAGTAGTGATTTCGTTTTTCTGTTTAATGC
TCATTTGCCGCTATTGCCCCTTTCTATGCGTCGCGTGCAACCCATCTCGT
AGAGCGCTTGGTTCGCTCGGTAATTCCCATGAAGTCCACCCTAAATCACG
ATTTCCACGAGGTGTTGGGTAACAACACCAAGGGCGCCGTCCGCAAGGGG
GCGGAGAACCTTCTGAAGGCGGGGGAGCCTATCACGAGCGAGACCATCTT
CCCTGCCGCCCGTCGAGTGTTTCGGAACCAGGTTTGTCAAGGGGCACCCT
GATGGGAGTTTTACAAATCATGGACATGCCGTCGGCTATCCCCCCCTCCA
CTAGAGCAGAAGATAATGCAGGGGAGTTTGTTATTTTTGTTTCCCTCCCC
CTCCCCATCTTCCTGTGTTTTGCTACATACGTGTTCTCATGTTCGATCAA
AGCATAACGACTCATTTTGAATCCACGGCCACTGGTGCCGTATATTTCAT
GTATTTCATCTCTCAGGTAGTCTGGTACATTAGGGATTCCTCTTGTAACA
CATTTGTTAAAGTTTTGTCTGTTTGTTGTGTTGCACGCGAACAGCGGCCT
CGAGCTGTGGTGTTGACGCGTTCGTGTGGTGGAGCGGCACAAATAATGTT
GAGCCCAAAAAGAAAAAACATCGCATAACGCTTGCTGATTGGTACGTTGA
CCCTGGTCTTGCTTGAAATGTTTACATTGCTCTTCTCTCTGTTCCCCCAT
GCCAGCACTCTAAGGTGGAGGAGATGGTTGGCAACATGGTCATGGAGCGC
ACGGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCAAGGTCGCCTGA
AGACCGCGTCCCGATGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCT
CATTCTTCATTCTCGTTATCATTTGCTCGGTCTTGACGCGGAGGCTGTTT
CTGTATGAATATTGGTGATGCCGTTGCAAGGAAACACGTGTTGACCCCCC
CCCCCCGCGCGCCCCCCGCCATGAACAAGTACTTTAGAACCCACAAATCC
CACTCGTAGTTGGCTTTTTGAGGTGGCGATGCCATGGACTTGTCAAGTCT
TGCGTGTCGAGGGTGTCCAACTAGACATTATCGATCCTCACTATCACCGA
GCAATCCATGAAGCACAACAACTAACAAATTTCGTTTGTGTGTATTTTTT
TATTCTTCGTATTGCACTTTCTTGTTTGGAGCCAGGTGGCTGTACCCATG
CAGGCGTTTATGATGAACGACCTGAGGTGCAACCTGCTCGCCGAAGTGGA
GACACTTCGCAACGCGACCCGCGCCAACGACGATGGTGGTGTGGATGATG
GGGAGGACCCCGTAGGGTTCCGTGCGGCACGGGTGCTCGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig663:25738..27579-

>mRNA_P-littoralis_Contig663.12.1 ID=mRNA_P-littoralis_Contig663.12.1|Name=mRNA_P-littoralis_Contig663.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig663:25738..27579- (Pylaiella littoralis U1_48)
CTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTGC
CATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAGG
AGGGCGGTGGCGAGCTCAACAAAGCTCAATTTTTCGAGCGCTTGGTTCGC
TCGGTAATTCCCATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGTT
GGGTAACAACACCAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGA
AGGCGGGGGAGCCTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCGA
GTGTTTCGGAACCAGCACTCTAAGGTGGAGGAGATGGTTGGCAACATGGT
CATGGAGCGCACGGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCAA
GGTCGCCTGAAGACCGCGTCCCGATGCGCACGATCGAGGTGGCTGTACCC
ATGCAGGCGTTTATGATGAACGACCTGAGGTGCAACCTGCTCGCCGAAGT
GGAGACACTTCGCAACGCGACCCGCGCCAACGACGATGGTGGTGTGGATG
ATGGGGAGGACCCCGTAGGGTTCCGTGCGGCACGGGTGCTCGTG
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