mRNA_P-littoralis_Contig663.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig663.7.1
Unique NamemRNA_P-littoralis_Contig663.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig663.7.1 vs. uniprot
Match: A0A6H5KZX2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.750e-16
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 3 
Query:    6 AVCRVALADLERLLSDGPDGWGSFFCCWQAYDSVVANRLREAELEPQRDPVTGRFSVEMARVFVLVCVQAIIPDKSYTQQACFPVLADVLGVKIRCFFHLGATASTNAGGNWCKQTFPPKKSSLRKLSPIPTVYLGM 416
            A  + ALA++E +LS   DGWG F+   Q YD +V NR    +L+    P  G   +E ARV  L  V     +  YTQQ C+P++A+ L + +R F H   + +  A  +WC   F P  +S R  S  PTVYL M
Sbjct:   56 ACLKTALANMEAMLS--MDGWGWFYRSLQPYDMLVMNRALAIDLDV---PADGLLPIETARVMYLFGVLESAGELMYTQQFCYPLVAETLQLNLRVF-HPVLSVNRLAHNSWCHHLFTPTIASRRARSATPTVYLAM 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig663.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZX2_9PHAE7.750e-1637.96Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig663contigP-littoralis_Contig663:17111..18498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size633
Hectar predicted targeting categoryother localisation
Exons4
Cds size348
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig663.7.1prot_P-littoralis_Contig663.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig663 17290..18392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791383.7133799-UTR-P-littoralis_Contig663:17110..172891680791383.7133799-UTR-P-littoralis_Contig663:17110..17289Pylaiella littoralis U1_48UTRP-littoralis_Contig663 17111..17289 +
1680791383.7765508-UTR-P-littoralis_Contig663:18392..184981680791383.7765508-UTR-P-littoralis_Contig663:18392..18498Pylaiella littoralis U1_48UTRP-littoralis_Contig663 18393..18498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791383.7262237-CDS-P-littoralis_Contig663:17289..174161680791383.7262237-CDS-P-littoralis_Contig663:17289..17416Pylaiella littoralis U1_48CDSP-littoralis_Contig663 17290..17416 +
1680791383.7352855-CDS-P-littoralis_Contig663:17872..179941680791383.7352855-CDS-P-littoralis_Contig663:17872..17994Pylaiella littoralis U1_48CDSP-littoralis_Contig663 17873..17994 +
1680791383.7506268-CDS-P-littoralis_Contig663:18118..181561680791383.7506268-CDS-P-littoralis_Contig663:18118..18156Pylaiella littoralis U1_48CDSP-littoralis_Contig663 18119..18156 +
1680791383.7618773-CDS-P-littoralis_Contig663:18331..183921680791383.7618773-CDS-P-littoralis_Contig663:18331..18392Pylaiella littoralis U1_48CDSP-littoralis_Contig663 18332..18392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig663.7.1

>prot_P-littoralis_Contig663.7.1 ID=prot_P-littoralis_Contig663.7.1|Name=mRNA_P-littoralis_Contig663.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MARVFVLVCVQAIIPDKSYTQQACFPVLADVLGVKIRCFFHLGATASTNA
GGNWCKQTFPPKKSSLRKLSPIPTVYLGMTTTSFSFYPRRTPPTTSARRK
NWRRSGRLRSRNRRP*
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mRNA from alignment at P-littoralis_Contig663:17111..18498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig663.7.1 ID=mRNA_P-littoralis_Contig663.7.1|Name=mRNA_P-littoralis_Contig663.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1388bp|location=Sequence derived from alignment at P-littoralis_Contig663:17111..18498+ (Pylaiella littoralis U1_48)
GGGCAGCTGTGTGCAGGGTGGCACTGGCGGACCTCGAGAGGTTGCTGAGC
GATGGCCCGGACGGGTGGGGTTCGTTTTTTTGCTGTTGGCAGGCGTACGA
CTCTGTCGTGGCGAACAGATTACGTGAGGCCGAGCTGGAACCCCAGCGAG
ACCCTGTGACCGGCCGCTTTTCGGTTGAGATGGCACGTGTGTTTGTCCTC
GTGTGTGTCCAGGCGATTATCCCGGATAAAAGTTACACCCAGCAGGCTTG
CTTCCCGGTCCTCGCTGATGTGCTAGGGGTCAAGATCCGATGCTTTTTTC
ACTTGGGTGCGTTATACATAGGTTTTAAATCGACACTCACTGTGTATGTG
TTTGATTTGCTGACTCGAACAAACGTGTATTTTGAGTTAAGATTTGTCCG
AAGTACATTTCCAGGGATCATCCCGGTATCGATTTTCGATGCTGGGCACA
AATAATGTCGTACTCGACCTCTACGGTATGGAATGTACGGTAACCTACGA
TAAAGGACCACCGGGGTAACGCTATCGTGTGGTCCTCGACCCTATACGTA
GACGAGACCACATTTCGAAGAACGAGTTAGCGCCTTCGGCAACTAATGAC
TATTTTAAAATGTCACCGTATTTTACCAATTACCATCTACCACGGTAATT
CCCGCCAAAATTTCTGCTGGAAAATGGGCGAGAGGCCCCCTGGTTGTATT
TAAATTGTTAATCAGTCACAAGGCATGTACGTGTTTGACCTTTTTCCATT
TCCATTGCTCAGGAGCGACCGCTTCCACCAACGCGGGTGGGAATTGGTGC
AAGCAAACCTTCCCCCCCAAGAAATCAAGCCTCCGCAAGTTGTCACCGAT
CCCCACGGTGTACCTGGGCATGACAACTACATCTTTCTACAGGGAGTTCA
AAGTTATTTTCGGGTTCAAGCAAGCATGCAAGGTGCCGTTGGGTCCCGAC
GCCAACGGGCGGGCGAGAGAGGGGTACAAGTTCGACTTCCCCTCATTCAA
CCACTTCGTTCAGCTTCTACCCTCGGCGGACGCCGCCGACCACCAGGCGA
GATAATTGCTCTTGTGGTGCTAAAACCCATCCAGCAGATTAAAAAGTTCA
TGTTCTTGGGACACCGTCGTCGTTAATACCCAGATATCAGCTCAGTTGTT
CGATGTGAGACTGTGAAAGCCGCATTCATATTTGATCGTATTTCGTGCGC
TCATTTTCTTTCATATTTCAGCGCCAGGAGGAAGAACTGGAGGCGCTCGG
GACGGCTCAGGTCACGCAACAGGCGCCCATAGTATGTATGGTATTCTGGA
AATTTGCATATAGAACGATACGAGATAGATGTATTACCGGAGCAGGTACG
CGTGTGTGATGACGGTGTGTATTTGGTGATCCCTATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig663:17111..18498+

>mRNA_P-littoralis_Contig663.7.1 ID=mRNA_P-littoralis_Contig663.7.1|Name=mRNA_P-littoralis_Contig663.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig663:17111..18498+ (Pylaiella littoralis U1_48)
ATGGCACGTGTGTTTGTCCTCGTGTGTGTCCAGGCGATTATCCCGGATAA
AAGTTACACCCAGCAGGCTTGCTTCCCGGTCCTCGCTGATGTGCTAGGGG
TCAAGATCCGATGCTTTTTTCACTTGGGAGCGACCGCTTCCACCAACGCG
GGTGGGAATTGGTGCAAGCAAACCTTCCCCCCCAAGAAATCAAGCCTCCG
CAAGTTGTCACCGATCCCCACGGTGTACCTGGGCATGACAACTACATCTT
TCAGCTTCTACCCTCGGCGGACGCCGCCGACCACCAGCGCCAGGAGGAAG
AACTGGAGGCGCTCGGGACGGCTCAGGTCACGCAACAGGCGCCCATAG
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