mRNA_P-littoralis_Contig661.104.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 139 bits (350), Expect = 5.520e-32 Identity = 77/170 (45.29%), Postives = 92/170 (54.12%), Query Frame = 1
Query: 1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSST 510
APN GG +GLVDET FFNP+Y+ G +E TLE++VA+QYVE MFFVS+GKPEYKFVVWR+AV+ LSTDYIQRM++RVMR+LA AH DKAFDV+AT+CDGA E S T
Sbjct: 643 APNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVE-----------------------------------------------------------MFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQT 753
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 135 bits (341), Expect = 8.480e-31 Identity = 77/170 (45.29%), Postives = 90/170 (52.94%), Query Frame = 1
Query: 1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSST 510
APN GG +GLVDETTFFNP+Y+ G +E LE++VA+QYVE MFFVS+GKPEYKFVVWR+AV+ LSTDYIQRM++R MR+LA AH DKAFDVIAT CDGA E S T
Sbjct: 552 APNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVE-----------------------------------------------------------MFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQT 662
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.940e-30 Identity = 77/173 (44.51%), Postives = 93/173 (53.76%), Query Frame = 1
Query: 1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSSTVLL 519
APN GG +GLVDETTFFNP+Y+ G +E LE++VA+QYVE M+FVSVGKPEYKFVVWR+AV+ LSTD+IQRM++RVMR LA AH DKAFDVIATVCDGA Q T+++
Sbjct: 410 APNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVE-----------------------------------------------------------MYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQLGEVTLVV 523
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI) HSP 1 Score: 127 bits (319), Expect = 3.080e-30 Identity = 72/165 (43.64%), Postives = 87/165 (52.73%), Query Frame = 1
Query: 1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQ 495
AP G ++GLVDE TFFNPVY+ + DE GL L +++A+QYVE FFVS+G PEYKFVVWR+AV+ LSTDYIQRM+ R MRFL+ AH+DK FDV+ATVCDGASEQ
Sbjct: 170 APKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE------------------------------------------------------------FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASEQ 274
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE) HSP 1 Score: 103 bits (258), Expect = 5.170e-21 Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 3
Query: 498 ILEHRFAHIRAGLGTHNAPTAAQAMQRSALGDQIRALHGSSRMNSSLNARKGADFNVSDYRGKIMLAVSKAERATYVRARSWNKYEAILSPRYL 779
ILEHRF +RAGLGT PTAAQA +RS GD R LHG SR N + NAR G DF SDYR +IMLAV++AE A VRARS N A+L PRY+
Sbjct: 239 ILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYI 332
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 5.600e-15 Identity = 61/168 (36.31%), Postives = 78/168 (46.43%), Query Frame = 1
Query: 4 PNAGGISGLVDETTFF-NPVYEERG-DEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTS 501
PN GGI GLVD +FF +P+ +G DE + LE TLE VA+QY+EV F+VS+G P+YKF V+R+AV+GLS I RM+ + L AH+DK FDVI TVCDGA+E S
Sbjct: 399 PNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLEV-----------------------------------------------------------FWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRS 507
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.130e-13 Identity = 60/176 (34.09%), Postives = 81/176 (46.02%), Query Frame = 1
Query: 4 PNAGGISGLVD-ETTFFNPVYEERG-DEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSSTVLLTS 525
PN GGISGLV ++ ++P+ +G D+ + LE+TLE +A+QY+EV ++VS+G P+YKF V+R+AV+GLS I RM+ +M L AH DK DVI TVCDGA E S T L TS
Sbjct: 184 PNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLEV-----------------------------------------------------------WWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATS 300
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.390e-12 Identity = 56/168 (33.33%), Postives = 75/168 (44.64%), Query Frame = 1
Query: 4 PNAGGISGLVDETTFF-NPVYEERG-DEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTS 501
PN GGI GLVD + +P+ +G + + LE TLE VA+QY+EV F+VS+G +YKF V+R+AVKGL+ ++RM+ VM L H+DK FDVI TVCDGA+E S
Sbjct: 108 PNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEV-----------------------------------------------------------FWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEHRS 216
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 1.760e-5 Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVE 135
AP GG +GLVDE TFFNPVY+ + DE L+ L++++A++YVE
Sbjct: 229 APKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVE 273 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig661.104.1 >prot_P-littoralis_Contig661.104.1 ID=prot_P-littoralis_Contig661.104.1|Name=mRNA_P-littoralis_Contig661.104.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp MFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVback to top mRNA from alignment at P-littoralis_Contig661:157580..159051+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig661.104.1 ID=mRNA_P-littoralis_Contig661.104.1|Name=mRNA_P-littoralis_Contig661.104.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1472bp|location=Sequence derived from alignment at P-littoralis_Contig661:157580..159051+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig661:157580..159051+ >mRNA_P-littoralis_Contig661.104.1 ID=mRNA_P-littoralis_Contig661.104.1|Name=mRNA_P-littoralis_Contig661.104.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig661:157580..159051+ (Pylaiella littoralis U1_48)back to top |