mRNA_P-littoralis_Contig661.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.1.1
Unique NamemRNA_P-littoralis_Contig661.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig661.1.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.240e-15
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+  AH +LR LHG+ +  D  L   PLP+ TAR RLLL+AI+VGND+AKF+++GP  A RL
Sbjct:  175 LFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARL 246
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BLAST of mRNA_P-littoralis_Contig661.1.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.760e-15
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+  AH +LR LHG+ +  D  L   PLP+ T R RLLL+A++VGND+AKF+++GP  A RL
Sbjct:  148 LFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARL 219
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BLAST of mRNA_P-littoralis_Contig661.1.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.500e-14
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+  AH +LR LHG+    D  L   PLP+ TAR RL+L+A++VGND+AKF+++GP  A RL
Sbjct:  420 LFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARL 491
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BLAST of mRNA_P-littoralis_Contig661.1.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 4.040e-12
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+      LR LHG+ +  D      PLP+ TAR RLLL+AI+VG D+AKF+++GP  A RL
Sbjct:  148 LFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARL 219
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0K2_ECTSI1.240e-1551.39Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D7G4G5_ECTSI5.760e-1548.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVY6_9PHAE1.500e-1448.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZU5_ECTSI4.040e-1245.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:564..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size239
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categorymitochondrion
Exons1
Evalue8.76e-15
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size216
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.1935294-CDS-P-littoralis_Contig661:563..7791680791382.1935294-CDS-P-littoralis_Contig661:563..779Pylaiella littoralis U1_48CDSP-littoralis_Contig661 564..779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.2050977-UTR-P-littoralis_Contig661:779..8021680791382.2050977-UTR-P-littoralis_Contig661:779..802Pylaiella littoralis U1_48UTRP-littoralis_Contig661 780..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.1.1prot_P-littoralis_Contig661.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 564..779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.1.1

>prot_P-littoralis_Contig661.1.1 ID=prot_P-littoralis_Contig661.1.1|Name=mRNA_P-littoralis_Contig661.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGN
DYAKFEHIGPAAAGRLLQSLPP
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mRNA from alignment at P-littoralis_Contig661:564..802-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.1.1 ID=mRNA_P-littoralis_Contig661.1.1|Name=mRNA_P-littoralis_Contig661.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=239bp|location=Sequence derived from alignment at P-littoralis_Contig661:564..802- (Pylaiella littoralis U1_48)
ACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGAAACACTACAGCT
CATGCGTTCCTTCGCCTGCTGCACGGCCTGCCTAAAGAGTACGACCCGGC
ATTGGTAGCCAACCCTCTGCCCGACGCGACTGCTCGAGATCGCCTACTTC
TTTATGCCATTGTCGTGGGTAACGACTACGCAAAATTCGAGCACATTGGG
CCGGCTGCGGCGGGGAGATTACTACAGTCCCTGCCTCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:564..802-

>mRNA_P-littoralis_Contig661.1.1 ID=mRNA_P-littoralis_Contig661.1.1|Name=mRNA_P-littoralis_Contig661.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig661:564..802- (Pylaiella littoralis U1_48)
ATGGCATTCAGAAGAAACACTACAGCTCATGCGTTCCTTCGCCTGCTGCA
CGGCCTGCCTAAAGAGTACGACCCGGCATTGGTAGCCAACCCTCTGCCCG
ACGCGACTGCTCGAGATCGCCTACTTCTTTATGCCATTGTCGTGGGTAAC
GACTACGCAAAATTCGAGCACATTGGGCCGGCTGCGGCGGGGAGATTACT
ACAGTCCCTGCCTCCG
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