mRNA_P-littoralis_Contig661.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.41.1
Unique NamemRNA_P-littoralis_Contig661.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:75793..79085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categoryother localisation
Exons3
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.6719954-CDS-P-littoralis_Contig661:75792..759601680791381.6719954-CDS-P-littoralis_Contig661:75792..75960Pylaiella littoralis U1_48CDSP-littoralis_Contig661 75793..75960 +
1680791381.683171-CDS-P-littoralis_Contig661:78757..788611680791381.683171-CDS-P-littoralis_Contig661:78757..78861Pylaiella littoralis U1_48CDSP-littoralis_Contig661 78758..78861 +
1680791381.698691-CDS-P-littoralis_Contig661:79033..790851680791381.698691-CDS-P-littoralis_Contig661:79033..79085Pylaiella littoralis U1_48CDSP-littoralis_Contig661 79034..79085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.41.1prot_P-littoralis_Contig661.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 75793..79085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.41.1

>prot_P-littoralis_Contig661.41.1 ID=prot_P-littoralis_Contig661.41.1|Name=mRNA_P-littoralis_Contig661.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
RPFVSGGDQGFWHLPHTHVGPHTSARGPRAEAKPLGSPEHCTSGASSPRF
SDGRFAVVQTWRRKMCETPPKPERLRLKTCRLFRRDGCSPRGMKSTGTTR
MTSWLSTT
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mRNA from alignment at P-littoralis_Contig661:75793..79085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.41.1 ID=mRNA_P-littoralis_Contig661.41.1|Name=mRNA_P-littoralis_Contig661.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3293bp|location=Sequence derived from alignment at P-littoralis_Contig661:75793..79085+ (Pylaiella littoralis U1_48)
AGGCCTTTCGTCTCGGGCGGGGATCAGGGATTCTGGCACCTTCCACACAC
ACACGTCGGCCCTCACACCTCGGCACGCGGTCCACGCGCGGAGGCGAAAC
CTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGTTC
AGCGACGGAAGGTTCGCGGTGAGTGCAAAAATCGTATTTCCTAGGGTCTC
ACAGGCGGCCCCTTCTGACCCCGGCTTCCGACTACCCTCTGTAGCACGAC
AGCGTGCTCCTTCCACAGCGGTGGCAAGTGTAGGCTCGCCCATCCCAGCC
GTTCGCCATACTCATGATCTACTCTCGGGAGCAATCCGCGTGGGAAACGA
TCGTGTGTGGGCGAAGATATCAACACATACATGGGCACATGTCATATTCG
GTTAGGGTTACGCCGCACCAACAGGCGCACGCGGTGCTGTTTTTAGGTTT
TTGCTTGTATTTTTTTTTTTTTTAAACTTACCAAGACATCAATGTGTTCG
TCTCTCTCCAGCCAAGGATCTCGAGCAGATATTGCAACGAACACAAAGAG
TGAAATACGTCTACCAGTGTTTCTATACTCAACAACCAGTGTACCGTTGC
AGCTCCCCTGAGGGTATCAGGCTCAACAAGACAATTTGGTGGTCGTCTTG
TGTGACACACGTTACACCATGAGTTGAGTGTTTACGATCTATATTTGTGC
TGTTTGCATCATCCTTGGCATAGTGATGGTGGTGATTTGATGTTTTTCGT
GCAGCAGCAGTGGATTTTACGTTCCTACAGACAAGAACACCGTTTTGAGT
TCCACAAATATATGCAATCTACAAAGTACTTCTTACTTTACGTTTCCCAT
ATGATTTTACGTTCCTACAGACAAGAACACCGTTTTGAGTTCCACAAATA
TATGCAATCTACACAGTACTTCTTACTTTACGTTTCTCATATGTATAGCG
AAGTACGATGCATCCGTGATGGCCCGTTTACGAAGGACATGCATGTGTAT
AGCTACCGTGCTCTCCACCAGCTCAACTATACTCACATGTACTTATTATG
TAGCGGGGTACAACATATAATCTACATGCGATAGCCTCACCAAGTTTGAC
GTGTAAGTTGCCCAGTGCGGTTCATTTTGATGCAGAATGACGTTCCACAT
ACACGTTGTACAGCAGTTTTCAGTTGCCTCTTTGTTGTTGTTGCGTGTAT
GCCTGCCTCGATTTCCACATCATCCAATGTGAATATACTTTGCACATACC
TGTTATTGTTGGTGAGACGATTTGGGTCAGACGATGCCGAATCGAAAATA
TGGGCGACCTGGAGGAAGCCCCTGATGGGTGAAATGCTACTATTAATGTA
CTCTGGAGTATGACTACAAATTCGCTATAAATTCGCTACAAGTATACGAT
ATATAGTCATACTCCATAGGTGCCACTATGTCCCCTCTTGTGCCATCTTG
TGCGTAAGAGGGGGGGTAGTTGTGAGTGTAGGACCCCGTCGTGCATGCTG
GGATTTTTCACTTTAGGGCGGGCCTTGTACATTTTCTCGTGTATAGCACT
GCTGCACTAGTCTAGTCTTGCTGCGGCAGTTCAGCATCAGAAATTGCCCG
CCGTAGGTAGTCGTGCCCTCAAAGTTTGCCAATTTTTTTCGTGGGTCCAA
ATCTCGCAACAGTACAGGACGTAAGGCGGTTTCTTGTAGGGCCGGATTTT
TTTTTAATTTTTTGATAGAATCCGAACGAACTTTTTCCGGCCAACGGTTG
CCGATCCGCTGTTCTTATAGGTAAATAGGTGTTCGGATTTTCGGTGATCC
CTTTTTTTGAGTATGTGGTTGAAGAGTCGGCTCCAGAGTGTATCTGCATC
GAAGGACCGCAGGATGGTGTTTTTTGCGCTGAAACCCGTTTGCATCGCCG
CTCGTAACTTTCGAACGAATGAAGACACAGCAATGACGAAGGCATCTTCC
GTGAGCTGTGTATATGATCCCCCTCGTGTCGTGATCGCTTGGGTTAGGGT
TACATCCGTACGTTCGCAACGTAGGTTTGCTCATGGCCAACTCATGCGAA
ACAAATTGAGAAAGATGTATCAGCCGGACTGCTGTACAGCAGCATTATTA
TATACTGCTGTATGTAGTTGTACAGCAGTAGAGAAAGGAGATGACAGCTC
GGGTTCTTTTTTACAACACAACATGCCACAGCCACGAGCGATGACCATTT
TGCGAACATGCCAGTGTAATCCTCACCCAAACGATTACCACACGAGGGGA
GCCATACGCACAGCTCACGGGAGATGGGCTTGTCATCGCTGTGGCTTCAT
TCATTGGGGAGTTACGAGCGAAGATGCAACTTGTGGTCTCTCTCAGAGGA
AGCTTTGATACTCCTCCTCCTGCTGCTGCTGCTGTGCTGATGATGCTACT
GCTACATACGATTGGTTTTGGCTGCTGATGAACACGATGGAATGAACGAT
GACACGGCAAGCGCACGCAGAAAGATGGTGGACACATATTATATATGGAC
AGCAGCAAGCAGTAGTAGCAGCAGCAGCAGGAGCAGCAGCTGCAACAACA
CAGAAAGTAGTAGCAGAGCTCTCCTCCTCTGATGCTCTGTTGTGATTAAT
ATCGTTTGTTTTGTCCACACACAAAGAGAGAGATAACTTCACACATTTTt
cTTTTATATATTTTCCGATCGTGCTTTCCGAACCGATCCAGCGTTCGGAA
AATGTCCGATTTTCCGAACGAAATCCGATTAAAAGCTGTTCGGAAAATTT
TGTTCGGAAAATTTTGTTCGGAAAATGTTGTTCGGAGAAAGGTGTTTTCC
GAGCCTTTAAGAAGCCTTGACTCTAAAAAAATTCGGAATCTATCAAAAAA
TGAATAAAATATCCGGCCCTACAAGAAACCGCCTAAGCCCTGAAAAGACT
GGCGTGGTATTGCTTCATCACGAAGGTATACTCATTCATGCCTAAATATG
TACGTCGAACGTTAGGTTGTTCAGACATGGAGACGGAAGATGTGCGAGAC
GCCGCCGAAGCCGGAGCGGCTGCGGTTGAAGACATGTCGCCTGTTCCGGC
GAGACGGATGTTCGCCGAGGTAAGACAGCGACCCTTGCATGCAAGACCTA
GGTTTCTCTGGCTCAGAATAAGCATGTTGTGCTTTCATCGGCTGGCAATT
GGGGCGCTTCTTCCGCGACATGTCCGCCTACGCACCCGTTAAACCCCCCC
CCCGCCCTTGGGCCCCCATCTCTGTACTTTGCCCATACCAGGGGGATGAA
GAGTACGGGGACGACGAGGATGACGTCGTGGCTATCAACAACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:75793..79085+

>mRNA_P-littoralis_Contig661.41.1 ID=mRNA_P-littoralis_Contig661.41.1|Name=mRNA_P-littoralis_Contig661.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig661:75793..79085+ (Pylaiella littoralis U1_48)
AGGCCTTTCGTCTCGGGCGGGGATCAGGGATTCTGGCACCTTCCACACAC
ACACGTCGGCCCTCACACCTCGGCACGCGGTCCACGCGCGGAGGCGAAAC
CTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGTTC
AGCGACGGAAGGTTCGCGGTTGTTCAGACATGGAGACGGAAGATGTGCGA
GACGCCGCCGAAGCCGGAGCGGCTGCGGTTGAAGACATGTCGCCTGTTCC
GGCGAGACGGATGTTCGCCGAGGGGGATGAAGAGTACGGGGACGACGAGG
ATGACGTCGTGGCTATCAACAACT
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