mRNA_P-littoralis_Contig661.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.5.1
Unique NamemRNA_P-littoralis_Contig661.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:6506..7879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons3
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.4073257-CDS-P-littoralis_Contig661:6507..65781680791381.4073257-CDS-P-littoralis_Contig661:6507..6578Pylaiella littoralis U1_48CDSP-littoralis_Contig661 6508..6578 -
1680791381.417809-CDS-P-littoralis_Contig661:7270..73631680791381.417809-CDS-P-littoralis_Contig661:7270..7363Pylaiella littoralis U1_48CDSP-littoralis_Contig661 7271..7363 -
1680791381.432089-CDS-P-littoralis_Contig661:7722..78791680791381.432089-CDS-P-littoralis_Contig661:7722..7879Pylaiella littoralis U1_48CDSP-littoralis_Contig661 7723..7879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.5.1prot_P-littoralis_Contig661.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 6508..7879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.5.1

>prot_P-littoralis_Contig661.5.1 ID=prot_P-littoralis_Contig661.5.1|Name=mRNA_P-littoralis_Contig661.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
PAESCGAGTSCLAQDGTSKLSRKCPHGWARHFLCMRVPCPEGCGDVHGAA
AQGASGACTPHSGVLKEGVKSPGLSAGGDGGQEGLLPAEEPEDGTGPTQE
AAPPAIC
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mRNA from alignment at P-littoralis_Contig661:6506..7879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.5.1 ID=mRNA_P-littoralis_Contig661.5.1|Name=mRNA_P-littoralis_Contig661.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1374bp|location=Sequence derived from alignment at P-littoralis_Contig661:6506..7879- (Pylaiella littoralis U1_48)
CCGGCCGAAAGCTGTGGTGCCGGGACAAGCTGTCTTGCCCAGGATGGGAC
GTCTAAACTTAGCAGGAAGTGTCCCCATGGATGGGCGAGGCACTTCTTGT
GCATGCGGGTTCCCTGTCCCGAGGGCTGTGGTGACGTGCATGGAGCCGCA
GCACAAGGTAATTGTTGAGTTCGTCGCAGGCGTTGCGTTGAAACTCTGTC
TGAGTACATACGTACGCGTTTGTTCTGAAAAATGAGAATGGTGCGTGTTG
CCGTGAACGCATTTGGTGTCGGGTGTCCTGGTCCATAACGGCAGTAGAAC
CAAAAGGTGTGTATGCAGTCGTTGATTCACGCAGAGAACAACATGTCGCG
CGCGACGCTCGTATGTAGTCAGTCTCGGGTAGGGATGCGTCTGCTGCTTG
TTCCATGCACAGGGATAGAGGGAGACAAACACCGAGGAATTCCAAAAATG
TCCGACTCTCCTTCGAACATTTTCAAAATAGGATGCGTACGTACTTGTCT
TCGCTTGATCTGACAGGTGCCTCTGGGGCATGTACTCCCCACTCAGGCGT
TCTTAAAGAAGGAGTCAAGTCACCTGGTTTATCCGCAGGCGGGGATGGAG
GCCAAGAAGGTATGGGCGGTGGCTTGCGTGACGACACCATTAGAACACAG
ATTGGAGAAAGACTTTGTGTTGATGAAAATTCCTGAAACTCAAACATGGT
ATGATACGGCTTGTAGAAGATTTTTCCTCGAACGAAGAGGGCTGCACAAT
ACAGAACGCCGCCTGCCGTACCTCCTCCTTCATCGTTTGTTATACAACTA
TATACTGCTGTAGCAATAGAAGTACTAATAATGATAGCGTGGGCGGCCAG
TAATAATGATAGGGTGGTTCGCCCGAAGCACAGGACCAGTCGCTCCATGA
AATGTGATGCAGACGCGCATCGCCTGAAGCATGTGTGTGATATATACTAT
CCAAAGCATCCCACCAGCAGTATTTCGTGACGATGAAATCACCACAGCTG
TACTGAAGTGGCCGGGCCATTCGTCGTTCACCCCAAATGTATCGATCCCC
CCAGCGCGCCTAGACTCGCGCGAGAATGCTTTGCGTTTTGTTGTGAAGAA
ATCGGGCGGCATGTGCCGTTGTGTTGTCGGCAAGGATACAGCGTTGCATG
TTGAGCAAATGTGTGAAACATTGACGACAACAGAGAAAAAGCGGTCTTTC
CTTTCCGCATGGAACAAAATTTCGCCGACGCCGGTTCGGATGACTCCGAC
GAAAGCATCATGACGTCCTTTTCGTGCTTTGTCTTCTACACCTTCCGCAA
GGTCTCCTTCCAGCAGAGGAACCTGAGGATGGGACTGGACCCACCCAGGA
GGCGGCCCCGCCCGCTATCTGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:6506..7879-

>mRNA_P-littoralis_Contig661.5.1 ID=mRNA_P-littoralis_Contig661.5.1|Name=mRNA_P-littoralis_Contig661.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig661:6506..7879- (Pylaiella littoralis U1_48)
CCGGCCGAAAGCTGTGGTGCCGGGACAAGCTGTCTTGCCCAGGATGGGAC
GTCTAAACTTAGCAGGAAGTGTCCCCATGGATGGGCGAGGCACTTCTTGT
GCATGCGGGTTCCCTGTCCCGAGGGCTGTGGTGACGTGCATGGAGCCGCA
GCACAAGGTGCCTCTGGGGCATGTACTCCCCACTCAGGCGTTCTTAAAGA
AGGAGTCAAGTCACCTGGTTTATCCGCAGGCGGGGATGGAGGCCAAGAAG
GTCTCCTTCCAGCAGAGGAACCTGAGGATGGGACTGGACCCACCCAGGAG
GCGGCCCCGCCCGCTATCTGT
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