mRNA_P-littoralis_Contig66.224.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5KZ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ17_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.480e-16 Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 7 KLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
K+S PVY G GPG L+I N AV LQQ V ++L D G++ L D +N +W T D T RRREL+ DLLHEHL T+ + + V V
Sbjct: 15 KVSGPVYAGPGPGELSINNCAVRLQQKVMSILRTLDSGVIALEPDVFLNGYWATQPDVHT-RRRELLTDLLHEHLLTHNQITSADTVQV 102
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.380e-14 Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 4 GKLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
G CPVY G G LTI NSAV+LQ V +VL N + G ++L D V+ +VTV D+ TPRR ELI DL+ E+ P + + + V+V
Sbjct: 190 GDQPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRFVTVADEFTPRRVELISDLVQEYSPVSQQIAKTDHVHV 279
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.580e-14 Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 1 AGKLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
AG CPVY G G LTI NSAV+LQ V +VL N + G ++L D V+ +VT D+ TPRR ELI DL+ ++L + + + + V+V
Sbjct: 6 AGDKPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDLVQDYLSVSQQIANSDHVHV 96
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5JFF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF6_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 3.610e-12 Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 7 KLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
K+S VY G GPG L++ N AV L+Q V +VL D G++ L D N T D T RRREL+ DLLHEHL T+ + + + V
Sbjct: 142 KVSGQVYAGPGPGELSMNNRAVRLRQKVISVLRTLDSGVIALEPDVFPNGFRATQPDVHTGRRRELLTDLLHEHLLTHNRITSADSLQV 230
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 5.270e-7 Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 73 ILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
+LQ V +VL D G+++L D VN ++TV D LTPRR EL+ DL HE + + + + + VN+
Sbjct: 1 MLQDKVMSVLRTVDSGMMRLEPDVYVNGQYITVADDLTPRRVELLSDLAHEFMSVSQPIANAHTVNI 67
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5K8L9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L9_9PHAE) HSP 1 Score: 52.4 bits (124), Expect = 8.230e-6 Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query: 94 AVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
+VL D G++ L D +N +W T D T RRREL+ DLLHEHL T+ + + V V
Sbjct: 2 SVLRTLDSGVIALEPDVFLNGYWATQPDVHTGRRRELLTDLLHEHLLTHNQITSADTVQV 61 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig66.224.1 >prot_P-littoralis_Contig66.224.1 ID=prot_P-littoralis_Contig66.224.1|Name=mRNA_P-littoralis_Contig66.224.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp AGKLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVback to top mRNA from alignment at P-littoralis_Contig66:693122..693398- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig66.224.1 ID=mRNA_P-littoralis_Contig66.224.1|Name=mRNA_P-littoralis_Contig66.224.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=277bp|location=Sequence derived from alignment at P-littoralis_Contig66:693122..693398- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig66:693122..693398- >mRNA_P-littoralis_Contig66.224.1 ID=mRNA_P-littoralis_Contig66.224.1|Name=mRNA_P-littoralis_Contig66.224.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig66:693122..693398- (Pylaiella littoralis U1_48)back to top |