mRNA_P-littoralis_Contig66.224.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.224.1
Unique NamemRNA_P-littoralis_Contig66.224.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5KZ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ17_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.480e-16
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    7 KLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
            K+S PVY G GPG L+I N AV LQQ V ++L   D G++ L  D  +N +W T  D  T RRREL+ DLLHEHL T+  +   + V V
Sbjct:   15 KVSGPVYAGPGPGELSINNCAVRLQQKVMSILRTLDSGVIALEPDVFLNGYWATQPDVHT-RRRELLTDLLHEHLLTHNQITSADTVQV 102          
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.380e-14
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    4 GKLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
            G   CPVY G   G LTI NSAV+LQ  V +VL N + G ++L  D  V+  +VTV D+ TPRR ELI DL+ E+ P  + +   + V+V
Sbjct:  190 GDQPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRFVTVADEFTPRRVELISDLVQEYSPVSQQIAKTDHVHV 279          
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.580e-14
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 AGKLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
            AG   CPVY G   G LTI NSAV+LQ  V +VL N + G ++L  D  V+  +VT  D+ TPRR ELI DL+ ++L   + + + + V+V
Sbjct:    6 AGDKPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDLVQDYLSVSQQIANSDHVHV 96          
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5JFF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.610e-12
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    7 KLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
            K+S  VY G GPG L++ N AV L+Q V +VL   D G++ L  D   N    T  D  T RRREL+ DLLHEHL T+  +   + + V
Sbjct:  142 KVSGQVYAGPGPGELSMNNRAVRLRQKVISVLRTLDSGVIALEPDVFPNGFRATQPDVHTGRRRELLTDLLHEHLLTHNRITSADSLQV 230          
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.270e-7
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   73 ILQQTVAAVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
            +LQ  V +VL   D G+++L  D  VN  ++TV D LTPRR EL+ DL HE +   + + + + VN+
Sbjct:    1 MLQDKVMSVLRTVDSGMMRLEPDVYVNGQYITVADDLTPRRVELLSDLAHEFMSVSQPIANAHTVNI 67          
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Match: A0A6H5K8L9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.230e-6
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   94 AVLHNGDGGILKLPKDQKVNHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNV 273
            +VL   D G++ L  D  +N +W T  D  T RRREL+ DLLHEHL T+  +   + V V
Sbjct:    2 SVLRTLDSGVIALEPDVFLNGYWATQPDVHTGRRRELLTDLLHEHLLTHNQITSADTVQV 61          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KZ17_9PHAE1.480e-1648.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZY5_9PHAE1.380e-1445.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE2.580e-1443.96RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JFF6_9PHAE3.610e-1243.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7F8_9PHAE5.270e-740.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K8L9_9PHAE8.230e-643.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:693122..693398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size278
Hectar predicted targeting categoryother localisation
Exons1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.4806736-CDS-P-littoralis_Contig66:693122..6933981680791380.4806736-CDS-P-littoralis_Contig66:693122..693398Pylaiella littoralis U1_48CDSP-littoralis_Contig66 693123..693398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.224.1prot_P-littoralis_Contig66.224.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 693123..693398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.224.1

>prot_P-littoralis_Contig66.224.1 ID=prot_P-littoralis_Contig66.224.1|Name=mRNA_P-littoralis_Contig66.224.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
AGKLSCPVYVGHGPGALTIENSAVILQQTVAAVLHNGDGGILKLPKDQKV
NHHWVTVTDQLTPRRRELIIDLLHEHLPTYRDLQDQNDVNVI
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mRNA from alignment at P-littoralis_Contig66:693122..693398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.224.1 ID=mRNA_P-littoralis_Contig66.224.1|Name=mRNA_P-littoralis_Contig66.224.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=277bp|location=Sequence derived from alignment at P-littoralis_Contig66:693122..693398- (Pylaiella littoralis U1_48)
GCCGGTAAACTTTCGTGTCCTGTGTACGTGGGACACGGGCCGGGAGCATT GACCATAGAAAACAGCGCCGTCATCCTACAACAAACCGTCGCTGCGGTGT TGCACAATGGAGACGGGGGCATTCTAAAGTTGCCCAAAGACCAGAAAGTG AACCATCACTGGGTCACCGTCACTGATCAGCTCACACCCCGCCGTCGCGA ACTTATAATAGACCTGTTGCACGAACACCTACCGACTTACCGCGACCTTC AAGACCAAAACGATGTCAACGTGATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:693122..693398-

>mRNA_P-littoralis_Contig66.224.1 ID=mRNA_P-littoralis_Contig66.224.1|Name=mRNA_P-littoralis_Contig66.224.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig66:693122..693398- (Pylaiella littoralis U1_48)
GCCGGTAAACTTTCGTGTCCTGTGTACGTGGGACACGGGCCGGGAGCATT
GACCATAGAAAACAGCGCCGTCATCCTACAACAAACCGTCGCTGCGGTGT
TGCACAATGGAGACGGGGGCATTCTAAAGTTGCCCAAAGACCAGAAAGTG
AACCATCACTGGGTCACCGTCACTGATCAGCTCACACCCCGCCGTCGCGA
ACTTATAATAGACCTGTTGCACGAACACCTACCGACTTACCGCGACCTTC
AAGACCAAAACGATGTCAACGTGATC
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