mRNA_P-littoralis_Contig66.183.10 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.183.10
Unique NamemRNA_P-littoralis_Contig66.183.10
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.600e-13
Identity = 50/137 (36.50%), Postives = 70/137 (51.09%), Query Frame = 1 
Query:  700 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 1074
            ++P+ + YP+L++AC WS WSGNTPSEWK+L AS G      + DK            + T  NP+ SP AM                       A  K E +++++  K+KEN+AL  E   TRK+G+AAME  N 
Sbjct:  285 DIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANT 414
[Close]
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.220e-12
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = 1 
Query:  700 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 1074
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++ R+A  DKE     KET  T+KKG+AA+E  N 
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKETLETKKKGLAALEAANT 234
[Close]
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.560e-8
Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 1 
Query:  703 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 1074
            +PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++  +A  +KE     KE   T KKG+AA E  N 
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRLNPNGDALSRRQHF-------AAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANT 252
[Close]
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.100e-7
Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 1 
Query:  700 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*INV 1074
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +     D      NP+ SPA M+                      AA K E +  R+A  DKE +       +  KKG AA+E  N 
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRLNPNGDALSRRQHF-------AAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAANT 236
[Close]
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.110e-7
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  700 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 870
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G     K  D      NP+SSP
Sbjct:  117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173
[Close]
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.480e-7
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  700 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPA 873
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPA 162
[Close]
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.860e-6
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  700 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 882
            E+ E W++P L+   A+SPWSG  PSEWK+L +S G     K  D      NP+ SPA M+
Sbjct:   31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.183.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FV02_ECTSI4.600e-1336.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGF1_9PHAE2.220e-1238.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE9.560e-835.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE4.100e-734.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE4.110e-747.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7S4_9PHAE8.480e-746.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVE3_9PHAE1.860e-644.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:639581..643019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1182
Hectar predicted targeting categoryother localisation
Exons5
Cds size363
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.183.10prot_P-littoralis_Contig66.183.10Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 639698..640060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.031151-UTR-P-littoralis_Contig66:639580..6396971680791380.031151-UTR-P-littoralis_Contig66:639580..639697Pylaiella littoralis U1_48UTRP-littoralis_Contig66 639581..639697 -
1680791380.0597072-UTR-P-littoralis_Contig66:640060..6402581680791380.0597072-UTR-P-littoralis_Contig66:640060..640258Pylaiella littoralis U1_48UTRP-littoralis_Contig66 640061..640258 -
1680791380.0739284-UTR-P-littoralis_Contig66:641264..6415751680791380.0739284-UTR-P-littoralis_Contig66:641264..641575Pylaiella littoralis U1_48UTRP-littoralis_Contig66 641265..641575 -
1680791380.084349-UTR-P-littoralis_Contig66:642469..6425461680791380.084349-UTR-P-littoralis_Contig66:642469..642546Pylaiella littoralis U1_48UTRP-littoralis_Contig66 642470..642546 -
1680791380.0943835-UTR-P-littoralis_Contig66:642870..6429021680791380.0943835-UTR-P-littoralis_Contig66:642870..642902Pylaiella littoralis U1_48UTRP-littoralis_Contig66 642871..642902 -
1680791380.1073604-UTR-P-littoralis_Contig66:642935..6430191680791380.1073604-UTR-P-littoralis_Contig66:642935..643019Pylaiella littoralis U1_48UTRP-littoralis_Contig66 642936..643019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.041988-CDS-P-littoralis_Contig66:639697..6400601680791380.041988-CDS-P-littoralis_Contig66:639697..640060Pylaiella littoralis U1_48CDSP-littoralis_Contig66 639698..640060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.183.10

>prot_P-littoralis_Contig66.183.10 ID=prot_P-littoralis_Contig66.183.10|Name=mRNA_P-littoralis_Contig66.183.10|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGS
NPLSSPAAMAAAASARKMLNNNGDSSSRRQTEAAAKAEADRLRRAQKDKE
NMALMKETEVTRKKGVAAME*
back to top

mRNA from alignment at P-littoralis_Contig66:639581..643019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.183.10 ID=mRNA_P-littoralis_Contig66.183.10|Name=mRNA_P-littoralis_Contig66.183.10|organism=Pylaiella littoralis U1_48|type=mRNA|length=3439bp|location=Sequence derived from alignment at P-littoralis_Contig66:639581..643019- (Pylaiella littoralis U1_48)
GCCAGAGCGGGGGACAAGAACGACGGACTCCCTCGTCAAGTTCGCGATCC
CGAACTTCCTCTTGTTGGTGAAGGAGGCGGCGCATGATCTCGATTTGCCC
CTACCGTTGGACCTCGACGAGAAGATCAACTACACTACCTTGGGCACAGG
TACATAGGATGAAAGGGTTGGGGTTGTGGCGACAGGGCGTGTGACAGTTT
TACCGCGGGAGAGTGTTGTCCGGGCGCCCGAGCACCTTCCGCTGATGTTG
CTCAGTTCACATAATAGCGCGGTGATGCCACATATCCTATCTATGTGCTA
CTGCTGTAGAATGAAACATGCGTAAGTTAAACGTGTCGGACTTGTCCTGA
AATTGTGAATCGATCCCACCATGTTGTTTAAAAAAGTCCTTCGGCGCGTC
GATAACCCGTTCCCCTCTACGATTCCTTTCGTCTATCTGTACACGGGCAA
AACCCATACTCACTTTCACCCAGAATCCAGGTGCATGCTGGACGAAATTT
GGGACTCTCAAGACCGAGCACACCAAAGGGACTCAGGCGCAGTTCGATAT
GTGAGAACAAGGCCTTGCGGGTTGTGTGTAATCGTTCTAGACTTTTGAAG
TATCCTGAGATTGCTGTGAAAGTGTGACGTGAGATCAATATAATAGCTGT
TGTGAGATGAGTATTACTGCTGTTCCTTTCACGTTCACTCCGGCAGACGT
ATAGTGGTATCAAACCTTAGGTGATTTTTGCCACGTACACATATGTGCTT
TGAACCTTGTACACAACTCACACAGCCAGCAGCAGTAGTATGCCTCCACC
GCAGCACGTTATACACAGGTTCAACAAATGCAGTAAACGTACTCACAACA
TCCTAACCTTATCCTTGCCCCGTTACAGCGGTAATAGCACGCGACAGCAA
GCAGCAGCAGCATAGCGGGAGCAGTAGTACAGTACAGCGGTCGAAACAGC
AAAGGAAAAAGGACGACAGAACATCGGTGCACAACGTTTGCACCAAGGCG
CTACCGCCGCTGTAGCTGCGTTTGTAAAGGCGAACTGGCCGTCAGGGTTC
TCACGTACCGCAAGTTGCAACGGCGATAGCTTTGTCTGTGAGCGAGTCGC
GGGCTACGGAAAATGCCGCATAGCTTAGCAGCAGACTCAGCAGAAGTAAC
ACCGCTCGTACACGTTCCCGCAGCCGACAGTTGCACAAGAAATTGCTGCC
ACAAGCATCACTACTGAAGCGCCTGATGTGCTGCTGTATAGTCCTTGAAG
AGGAGGTCTTCCGTGATGGAATATTTGATGTACAGTTCTTGTGCTCAAGG
GATCGAAAACCTGTTCACCCAAAAACATGGGCAGCTCCAACCTCACCCTC
TGCACATGTACTGTAAAAAGTATTTGGCGTTGTTCACTGAAGTTCTCACC
ATTCATACCCTGCGTTGTGCACACCCGTGGTTTTGTCGGCGCAGGGGGCC
GCAATCTGAGGATGACTTCGAATCGGGAAAAACGAGTGAAGATTACATGA
TGAAGCTTCTCCAGTACATGTGGACCCAATCCACCGAATACAAGACGGCG
GCCGCCCAAGATCTCACAGGCGACGAGTCTGGTGGGGCCGCGACTGGAGC
GGGAACGACGGTGGTCGCTGCTGCAACTCATTCGGCAGCAGCGGCCGCCG
CGACCGCTCCTGGAAGGGGGCTCCGGAGGCCGAGAGCGATGGCGTGGGAC
CAAAGCCAACATGCCACTCAACAAAGATCGCCAGATTGGCACTTTTAAAG
ACGTGGTGCGTATCGGAACTGCGAATTGTACATTTTTACGGCCCCCTCAT
CGTGACTCTTGAAAGGAGGTTATTGCTTCGAACTAAACACGAAGGTGATC
GTTCGTGGTGTTGTTCGTGTTGTGGGTTTGACGCATGTGTGGAGAAAATA
ACGGATGGAACGCATTCAGGGGCAAGCTTGATATCTGTGATCAACCCGTT
CGGCGTATAGCGTGGTGTACTTCGGTACGCCGTTGCCTTCACGTGTATAC
TGAACGTCAATTTGTACACAGGTGTGTGCGACAAAGATAGTGCGAGGTTT
CCACCAGAAAAATGACTTTAAATAATTGCGTCAAATTCTTGATCTTCCTC
GACGGTTGCAATTATTGCTTTTCCGCTTGTAACGCTTGGCGGTGTTGAAC
ACCACAGACCACGAATAAAAAAGGGAGACCCAGAGACGAAGAGCCTGGTG
TTTAGTCTAGAAAATAACGTCGTTTGGAGCGCTGGTGGAGTTATTTTTCT
TCTGGTTGACCACCGAAAAACAGCAACACGGACAACAGCAGACAGCACGG
CACATGCCGCAGTGGTACAGCTCTGTATATTGGGTGTGTGTGGGTGCCTG
CGTATCGCACACACAGATTGATGCTTCTGCGAAGCATACATTTATGTTGT
TGAGAGGAGGCACAGCAGCAGCAACAAAACACAAAACAACAGCAGTCGGA
AGAAGAGGCGATTGCGCCACACCTCCCATAAGCCGAGGTCATGTCGCATA
TCACTCACACACAAACAGGGGCGACAGAGTAGACAGCACAGTGCAGCAGT
ATATCACAGGAGCCGCGCAACTGTACGGTGCAGCGGCAGGTGCAGCGGTG
AAGCAGGTAAGTGTTTGTGTGCCAAGAAGGTTGTAATGAATTCTTAGGTG
TTATCCCATGTCTCCGTGACCGCAGCTTCATGCAGATGGGAGCGTCACCA
ACATGATAACTCATGACTCCCACCGCTCGTTCCACCCCTTCCGCAATTCC
CTGTTGCGCAGACCTCAGGAAGTTCAAGGCAGGTCTGGGATTGTGCGGAC
GTGCTTGACGGGTGCGATTTCATGGTCGATGTCGAGGAATAGAGGAAGGA
GGATGTAGGCGTTACCTCAAGCAGTGGCGTTGGCAGTGGATCAGCGGCGG
GTCTCGTCACCGGTGGCAATGCTGGGACTGCGGGTAGTGCTAGGAAGAAG
TTGCCGGAGATGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATG
TGCCTGGTCCCCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGT
GTGCGTCCGGCGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGAC
ACGGGGTCAAACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATC
GGCGCGCAAAATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGA
CCGAAGCAGCAGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAG
GACAAGGAGAACATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAGAA
GGGTGTCGCAGCCATGGAATAAATAAATGTCAAACGCGGTGGAGCTAAAC
AACCACATGAAGCGGATGGTGGAGCTTCGGGAAGCCGAAACTAATCTCAA
GAAGGACGAGGCCCAGGCGGCGAAGCGGGCCCGAAAGAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig66:639581..643019-

>mRNA_P-littoralis_Contig66.183.10 ID=mRNA_P-littoralis_Contig66.183.10|Name=mRNA_P-littoralis_Contig66.183.10|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig66:639581..643019- (Pylaiella littoralis U1_48)
ATGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTC
CCCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCG
GCGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCA
AACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAA
AATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAG
CAGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAG
AACATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAGAAGGGTGTCGC
AGCCATGGAATAA
back to top