mRNA_P-littoralis_Contig66.71.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.71.4
Unique NamemRNA_P-littoralis_Contig66.71.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: A0A6H5JKD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD0_9PHAE)

HSP 1 Score: 446 bits (1146), Expect = 4.840e-150
Identity = 212/238 (89.08%), Postives = 224/238 (94.12%), Query Frame = 1 
Query:  658 NGVALKASMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLRGGGDGAGEGGVGGTGYEQATQLYFPEAVESAEFVRGQGGALELVVSARGQPHLTYVDVETLQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVWGQ 1371
            NGVAL ASMK+HAKYVVVCRWAPDG AFVTASHDKVVTLYTLRGGGDG G+GGVGGTG+EQATQLYFPEAVES EFVRG+GGALELVVSAR QPHLTYV++ETLQQRRVSLNEKEWDTHVSFTVMSMAAS DG+YLLAATDK+RNILWRAGSN RVRTLMGHT DDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGR VE+LK H  VIRDIHHDP  +VLVTASYDKTV+VWG+
Sbjct:   31 NGVALLASMKNHAKYVVVCRWAPDGRAFVTASHDKVVTLYTLRGGGDGTGQGGVGGTGFEQATQLYFPEAVESVEFVRGEGGALELVVSARAQPHLTYVNIETLQQRRVSLNEKEWDTHVSFTVMSMAASGDGKYLLAATDKSRNILWRAGSNARVRTLMGHTTDDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRAVEQLKGHRAVIRDIHHDPSRRVLVTASYDKTVKVWGE 268
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: D7G8L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L4_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 1.040e-107
Identity = 157/177 (88.70%), Postives = 167/177 (94.35%), Query Frame = 1 
Query:  841 ATQLYFPEAVESAEFVRGQGGALELVVSARGQPHLTYVDVETLQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVWGQ 1371
            ATQLYFPEAVES EFV+G+GGALELVVSAR QPHLTYV++ETLQQRRVSLNEKEWDTHVSFTVMSMAAS DG+YLLAATDK+RNILWRAGSN RVRTLMGHT DDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVE+LK H  VIRDIHHDP  +VLVTASYDKTV+VWG+
Sbjct:   13 ATQLYFPEAVESVEFVKGEGGALELVVSARAQPHLTYVNIETLQQRRVSLNEKEWDTHVSFTVMSMAASGDGKYLLAATDKSRNILWRAGSNARVRTLMGHTTDDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVEQLKGHRAVIRDIHHDPSRRVLVTASYDKTVKVWGE 189
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: A0A836CE45_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE45_9STRA)

HSP 1 Score: 239 bits (611), Expect = 5.510e-70
Identity = 125/255 (49.02%), Postives = 157/255 (61.57%), Query Frame = 1 
Query:  616 SGRGDGGGVEEKGKNGVALKASMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLRGGGDGAGEGGVGGTGYEQATQLYFPEAVESAEFVRG--QGGALELVVSARGQPHLTYVDVET---LQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVW 1365
            SG G G  V  +  + V   A+ +DHAKYVV  RW+ DG+   TASHDK V LY+                     T+LYFPEAVE+ EFV G   G    L+V++R QPHL YVD+       Q RVS+N   WD HVSF+V+ +AAS DGRY+LAATD+ R I++RAG N  +RTL+GH AD YFQPR  W PSGL ++CNS     V  +C+A  RVVER   H G +RD+   P  +VL TASYDK+V+VW
Sbjct:   36 SGGGGGDAVSTQASDVVHAVAAFRDHAKYVVCARWSRDGALLATASHDKTVALYSTAAAXXXXXXXXXXXAPLRLVTKLYFPEAVEAVEFVGGGASGDPQRLMVASREQPHLVYVDLVDGAGYAQARVSVNANAWDAHVSFSVLGLAASPDGRYVLAATDRARTIVYRAGHNAHIRTLVGHAADAYFQPRAAWSPSGLTAFCNSQDARGVVAYCVAGARVVERAGGHAGAVRDVCTHPTARVLYTASYDKSVKVW 290
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: A0A7S2SGN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGN2_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.030e-51
Identity = 117/266 (43.98%), Postives = 146/266 (54.89%), Query Frame = 1 
Query:  661 GVALKASMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLR--------------------GGGD---GAGEGGVGGTGYEQATQLYFPEAVESAEFV---RGQ--GGALE-LVVSARGQPHLTYVDVETLQQR-RVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVWG 1368
            G+   AS+  H K+V   RW+PDG    T S D  V L+  R                    GGG+   G  + G   +   +    YF EAV++  FV   RG   GG  E LV++ RG P L YVD+        VSLN   WDTHVSF V+ + AS DGRYLLAATDK+R+I++  G +   R L GH AD Y +PRV WD SG +   NS  D  V V CLAS RVV RL+ H G+IRD+ H P  ++L TASYD TV+VWG
Sbjct:   69 GLEPLASVAAHRKFVEAARWSPDGRFLATGSADGTVKLWEYRRSACRIEDEGQVAEQSSIQRGGGEPQEGEEDLGAESSILREVQTYYFREAVDALAFVPSPRGSAPGGQAECLVMAPRGHPALKYVDLGAPSTPWEVSLNASAWDTHVSFNVLHLEASPDGRYLLAATDKDRHIIYPVGQHIHARELFGHAADAYAKPRVCWDSSGGYVLSNSQNDSGVFVWCLASQRVVHRLEGHKGIIRDLSHHPSRRLLATASYDHTVKVWG 334
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: A0A7S2SGK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGK4_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.200e-50
Identity = 117/266 (43.98%), Postives = 146/266 (54.89%), Query Frame = 1 
Query:  661 GVALKASMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLR--------------------GGGD---GAGEGGVGGTGYEQATQLYFPEAVESAEFV---RGQ--GGALE-LVVSARGQPHLTYVDVETLQQR-RVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVWG 1368
            G+   AS+  H K+V   RW+PDG    T S D  V L+  R                    GGG+   G  + G   +   +    YF EAV++  FV   RG   GG  E LV++ RG P L YVD+        VSLN   WDTHVSF V+ + AS DGRYLLAATDK+R+I++  G +   R L GH AD Y +PRV WD SG +   NS  D  V V CLAS RVV RL+ H G+IRD+ H P  ++L TASYD TV+VWG
Sbjct:  234 GLEPLASVAAHRKFVEAARWSPDGRFLATGSADGTVKLWEYRRSACRIEDEGQVAEQSSIQRGGGEPQEGEEDLGAESSILREVQTYYFREAVDALAFVPSPRGSAPGGQAECLVMAPRGHPALKYVDLGAPSTPWEVSLNASAWDTHVSFNVLHLEASPDGRYLLAATDKDRHIIYPVGQHIHARELFGHAADAYAKPRVCWDSSGGYVLSNSQNDSGVFVWCLASQRVVHRLEGHKGIIRDLSHHPSRRLLATASYDHTVKVWG 499
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: D7G994_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G994_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.250e-47
Identity = 138/253 (54.55%), Postives = 160/253 (63.24%), Query Frame = 1 
Query:    1 SRNRLTARVAELEKENKALSDANSRLVPQRSGGGXXXXXXXXXXXXSNESGESTG----EDPAAPFVIPGDRSACLRQVSSILVGCHGGTNVLCARSCSSLPGTVASGGADMSVQVSRLAE---ESHGNDDGDGVSSA-----ELHRLKLAAPVLSMDFCPASAPIFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLISVXXXXXXXXAGDEEYGDSGRGDGGGVEEKGKNGVALKASMKDHAKYVVVCRWA 723
            S  +LT RVA+LE+ENKALS+AN RL        XXXXXXXXXXXX  E   + G    +DPAAPFV+PGDR+AC+RQVS  LVGCHGGTNVLCAR+C  LPG VASGGADMS+QVSRLA+   ++ GN D  G +S+     ELHRLKLAAPVLSMDFCP+S P  G XXXXXX                      L+S+         GD              EE   NGVAL ASMK+HAKYVVVCR++
Sbjct:    7 SSQQLTLRVAKLEEENKALSEANLRLSQGXXXXXXXXXXXXXXXXXGEEGHHADGVGVADDPAAPFVVPGDRTACVRQVSDTLVGCHGGTNVLCARACPGLPGIVASGGADMSLQVSRLAQGLGDNEGNADSGGSASSSSRSTELHRLKLAAPVLSMDFCPSSVPFRGGXXXXXXGLLLAGGMDGSSH---------LVSIDGSH----GGDAXXXXX-------XEET--NGVALLASMKNHAKYVVVCRYS 237
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: K8YTZ0_NANGC (Uncharacterized protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTZ0_NANGC)

HSP 1 Score: 182 bits (463), Expect = 8.950e-47
Identity = 100/255 (39.22%), Postives = 141/255 (55.29%), Query Frame = 1 
Query:  679 SMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLRGGGDGAGEGGVGGTGYEQATQLYFPEAVESAEFV---------------------RGQGGALE-----LVVSARGQPHLTYVDVETLQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVW 1365
            + KDH K+ V+ RW+  G  + T  HDK V LY   GGG                   YF   VE+  FV                     RG+GG        L+V++R   HLTY+D ++ ++  VSLN   WDTHVSF+V+S+A S    +LLAATDK+R IL+R G N ++R+L GH AD+Y  PRV WD +G + YC+S   +++    LAS RVV +LK H  ++RD+  DP + +L + +YDKT+R+W
Sbjct:  235 ARKDHEKHAVIGRWSRCGRLYATGGHDKAVYLYDSNGGGP--------------LKSFYFLGNVEALAFVDRPASGCGKVLKPLETGEAQTRGEGGLSACSRPFLIVASRNVAHLTYIDCDSFEKHTVSLNNALWDTHVSFSVLSLAVSPCQEFLLAATDKSRVILYRIGHNEQLRSLYGHRADEYSNPRVAWDRNGNYVYCSSQEGNELVGWSLASERVVVKLKGHRALVRDMTFDPASCLLASIAYDKTLRLW 475
[Close]
BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: A0A7S4PGC9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PGC9_GUITH)

HSP 1 Score: 147 bits (371), Expect = 1.920e-35
Identity = 82/230 (35.65%), Postives = 129/230 (56.09%), Query Frame = 1 
Query:  676 ASMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLRGGGDGAGEGGVGGTGYEQATQLYFPEAVESAEFVRGQGGALELVVSARGQPHLTYVDVETLQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVW 1365
            A+ K+H KYV+   W+PDG  F T  HDK V +Y +  G  G          +E+     F    E+  F+     +  LV+S RG  +L Y+D ++ +  +V+LN+ + D HVSFTV+ +  S DG+YLLA+TDK+R +L+  GS+ ++R   G   D+  Q R  W PSG + Y  S  D  ++   + S +VV +L  H G +RD+      + L++AS+DK++R+W
Sbjct:  112 ATFKNHNKYVIRGAWSPDGQLFATCGHDKHVNIYKVVEGEPGEALEAPKAPIFEKFRSKEFVNIPEAIAFL---SDSATLVISIRGDNYLHYLDTQSGEDMKVNLNQ-QGDDHVSFTVLDLVPSPDGKYLLASTDKSRLVLYPVGSSAQLRWYYGAVNDELCQTRACWHPSGAYIYVTSQ-DQKLYCWKVTSQKVVAQLVGHTGTVRDLDISWDGKTLISASFDKSLRLW 336
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BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: A0A482UUY4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUY4_9ARCH)

HSP 1 Score: 143 bits (360), Expect = 5.540e-35
Identity = 82/238 (34.45%), Postives = 124/238 (52.10%), Query Frame = 1 
Query:  670 LKASMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLRGGGDGAGEGGVGGTGYEQATQLYFPEAVESAEFV----RGQGGALELVVSARGQPHLTYVDVETLQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVWGQ 1371
            L ++   H KYVV    + D    VTAS+DK V +YT    G    +  V      +   +Y P    +   +         A  L+V  R  P+L YV+  TL++  +S N+  WDTHVS T +S+A S   +YL   TDK+ +I+++  +N RV  L GHT+ DY +P   W  +  + Y NS G+  V+V+ + S RV  +L  H  V+R +   P+   + +ASYDK+V VWG+
Sbjct:    7 LGSTYTHHTKYVVSVSISQDTYTLVTASYDKYVHIYTQNDMGVYEKKHSVLFETTPECVAVYVPSHTHAPSSLDHTPSSXXXAPVLIVGVRDVPYLVYVNTHTLERTTISHNKHSWDTHVSITPLSLALSPCQKYLCVCTDKHIHIVYKLHTNVRVCVLGGHTSGDYSKPVCVWHHTSKYIYSNSEGESSVYVYDICSQRVCMKLHGHSNVVRGLAAHPYKASMASASYDKSVIVWGE 244
[Close]
BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Match: A0A7S0EYG3_9CRYP (Hypothetical protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EYG3_9CRYP)

HSP 1 Score: 147 bits (370), Expect = 1.100e-34
Identity = 86/231 (37.23%), Postives = 130/231 (56.28%), Query Frame = 1 
Query:  676 ASMKDHAKYVVVCRWAPDGSAFVTASHDKVVTLY-TLRGGGDGAGEGGVGGTGYEQATQLYFPEAVESAEFVRGQGGALELVVSARGQPHLTYVDVETLQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLAATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVW 1365
            A+ K H KYV+   W+PDG  F T  HDK V +Y  +   GD A EG      +E      F    E+  F+     +  LV+S RG  +L Y+D ++ +  +V+LN+ + D HVSFTV+ +  S DG+YLLA+TDK+R +L+  GS+ ++R   G   D+  Q R  W PSG + Y  S  D  ++   + S +VV +L  H G +RD+      + LV+AS+DK++R+W
Sbjct:  181 ATFKHHQKYVIRGVWSPDGELFATCGHDKHVNIYKVVEAEGDEAQEG-PRSPSFELIRSKEFVSIPEAITFL---SDSTTLVISIRGDNYLHYLDSQSGEDLKVNLNQ-QGDDHVSFTVLDLVLSPDGKYLLASTDKSRLVLYPVGSSVQLRWYYGAVNDELCQTRACWHPSGAYIYVTSQ-DQKLYCWRVTSQKVVAQLVGHTGTVRDLDISGDGKTLVSASFDKSLRLW 405
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.71.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKD0_9PHAE4.840e-15089.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8L4_ECTSI1.040e-10788.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CE45_9STRA5.510e-7049.02WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S2SGN2_9STRA1.030e-5143.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SGK4_9STRA5.200e-5043.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7G994_ECTSI1.250e-4754.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8YTZ0_NANGC8.950e-4739.22Uncharacterized protein (Fragment) n=3 Tax=Monodop... [more]
A0A7S4PGC9_GUITH1.920e-3535.65Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A482UUY4_9ARCH5.540e-3534.45Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0EYG3_9CRYP1.100e-3437.23Hypothetical protein n=2 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:262104..269569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8L4
PFAMsWD40
Model size2130
Max annot lvl2759|Eukaryota
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.98e-113
EggNOG OGs28N03@1|root,2S80F@2759|Eukaryota
Ec32 ortholog descriptionQuinonprotein alcohol dehydrogenase-like superfamily
Ec32 orthologEc-00_010930.2
DescriptionWD40 repeats
Cds size1062
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.71.4prot_P-littoralis_Contig66.71.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 263289..268822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791376.328585-UTR-P-littoralis_Contig66:262103..2623061680791376.328585-UTR-P-littoralis_Contig66:262103..262306Pylaiella littoralis U1_48UTRP-littoralis_Contig66 262104..262306 +
1680791376.3396373-UTR-P-littoralis_Contig66:263170..2632881680791376.3396373-UTR-P-littoralis_Contig66:263170..263288Pylaiella littoralis U1_48UTRP-littoralis_Contig66 263171..263288 +
1680791376.4388497-UTR-P-littoralis_Contig66:268822..2695691680791376.4388497-UTR-P-littoralis_Contig66:268822..269569Pylaiella littoralis U1_48UTRP-littoralis_Contig66 268823..269569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791376.3545635-CDS-P-littoralis_Contig66:263288..2633001680791376.3545635-CDS-P-littoralis_Contig66:263288..263300Pylaiella littoralis U1_48CDSP-littoralis_Contig66 263289..263300 +
1680791376.3671336-CDS-P-littoralis_Contig66:263674..2640571680791376.3671336-CDS-P-littoralis_Contig66:263674..264057Pylaiella littoralis U1_48CDSP-littoralis_Contig66 263675..264057 +
1680791376.3795934-CDS-P-littoralis_Contig66:265583..2657071680791376.3795934-CDS-P-littoralis_Contig66:265583..265707Pylaiella littoralis U1_48CDSP-littoralis_Contig66 265584..265707 +
1680791376.3915954-CDS-P-littoralis_Contig66:266438..2665791680791376.3915954-CDS-P-littoralis_Contig66:266438..266579Pylaiella littoralis U1_48CDSP-littoralis_Contig66 266439..266579 +
1680791376.402606-CDS-P-littoralis_Contig66:267014..2671211680791376.402606-CDS-P-littoralis_Contig66:267014..267121Pylaiella littoralis U1_48CDSP-littoralis_Contig66 267015..267121 +
1680791376.4146864-CDS-P-littoralis_Contig66:267769..2679341680791376.4146864-CDS-P-littoralis_Contig66:267769..267934Pylaiella littoralis U1_48CDSP-littoralis_Contig66 267770..267934 +
1680791376.428664-CDS-P-littoralis_Contig66:268692..2688221680791376.428664-CDS-P-littoralis_Contig66:268692..268822Pylaiella littoralis U1_48CDSP-littoralis_Contig66 268693..268822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.71.4

>prot_P-littoralis_Contig66.71.4 ID=prot_P-littoralis_Contig66.71.4|Name=mRNA_P-littoralis_Contig66.71.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=354bp
MSVQVSRLAEESHGNDDGDGVSSAELHRLKLAAPVLSMDFCPASAPIFGG
GGGGGSNSSSSSSGRGLLLAGGMDGSSHLISVDSSSSSDDAGDEEYGDSG
RGDGGGVEEKGKNGVALKASMKDHAKYVVVCRWAPDGSAFVTASHDKVVT
LYTLRGGGDGAGEGGVGGTGYEQATQLYFPEAVESAEFVRGQGGALELVV
SARGQPHLTYVDVETLQQRRVSLNEKEWDTHVSFTVMSMAASADGRYLLA
ATDKNRNILWRAGSNNRVRTLMGHTADDYFQPRVQWDPSGLFSYCNSSGD
HDVHVHCLASGRVVERLKSHGGVIRDIHHDPWTQVLVTASYDKTVRVWGQ
GQQ*
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mRNA from alignment at P-littoralis_Contig66:262104..269569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.71.4 ID=mRNA_P-littoralis_Contig66.71.4|Name=mRNA_P-littoralis_Contig66.71.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=7466bp|location=Sequence derived from alignment at P-littoralis_Contig66:262104..269569+ (Pylaiella littoralis U1_48)
TCTCGCAACAGGTTGACCGCGAGAGTGGCCGAGCTCGAGAAAGAAAACAA
AGCCCTGTCCGACGCCAACAGCCGCCTAGTACCGCAAAGGAGCGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGAGAAGGAGGCAGCAACGAAAGC
GGCGAGTCGACGGGGGAAGATCCCGCCGCGCCGTTCGTCATTCCGGGAGA
CAGGTGAGGGGGGCGGTATACTCGTGGGATAAATACTTTTAACATATCGT
GTATGCACCAACCAGGAAAATCTTTCCCACAACGACTGCGTAGTACCGCA
GCATGGAACATCCTTCGCACAGTAAATGTATTGATTAAAAGTTTACATGA
TAATACTGTTGAAAACACATCCAACAGGATTATCGCTGCGTGCTCGTTTA
TTCGAAACGATAGCAAGGCCACCCCGATCGCTACGTCAGTACCAAGATAT
CTTCTTGTAGGATAGGTATCCTTTGATACCGGTCAAGAGTATCCACACCC
GTGGTCCTTAAAAGAAAAAAAAAAACGCTCTGGAAGCAGATGTCGCCTTG
ACACGCTCTTTCTCGGGAATGTTAGGTTTGATACGAAGGGGCGCGCGCTC
CCCAGAGGACATCTGAGAGATTCATTCTTGCGCATGCAGGGACGGGGGGG
GGTACATTCCACGGTTCCTTCGGGATGCCATGTGTCATGCACGCACAGGC
GGGCGTTCCCTTGAAAGGACATCTGAGATGTTTGTGTGCGAGTTCATTCA
CTCACACGTTTTTTTTGTTTCAAGAATCTTGTCCGTTTTTCCCTCTCCTT
GTGTGTGTTTGTTGTGCAAAACCTCTCCCGTGCACAATACATGTACTAGT
ACCATTTTGTCTGTGGGCGGTGCCTGTTTTGCTGCTGCTGTTGTTGCAAA
TGTGGGATTCTTGCGCAGAAAAACGTTTCGGTTTCTAGACCGTTCATCCG
AGCCCCGATACCATGTGCATGGAGAAAGGAAACCAAGATCCCTGCTCCCC
CCCCCCGCCCTCCTCCTCCCCTGCCCTTCTTTCCTTCCGCCTGCCCCCCA
TCCGCTTTTTGCTCCAGATCAGCATGCCTCCGCCAGGTTTCGAGTATCCT
GGTGGGCTGCCACGGCGGGACTAACGTGTTGTGTGCCCGCTCGTGCTCCA
GCCTTCCTGGCACCGTGGCGAGCGGTGGAGCGGACATGTCGGTGCAGGTG
GGCGAGACTTTTTTGCAAGATGCTTGAAGAACTGCTACTCCGGTCACGCG
GCTTATATCGCGTATTTTTTTGTTTTCTGGAGGGGGGGGGGGGGGAGGCG
TTGGCTTCTTGAGACTGTGGATATAGCGCAGTAGACTCGGGCACCCGGTA
CGGCTTACTTGGCATGATCGGCGCAGACGACGGTCAAAGAAAATCGGAAT
AACTAAAACGGACCTTTACCCGTATGTAAGACGTGCATAGCCTGGAATTT
TCGTGTGTGGGAGACAAATGGACGGCTGTGCACATTCCGTTGTCTTGTTC
CTACTGTACGTATTTCGCGAGAAAAACAATGGCACGTGTGTGTATGTATT
TTTTGCTTTTGTTTTGTTCAGGTATCTCGGCTGGCTGAAGAGTCGCACGG
CAACGACGATGGCGACGGCGTCAGCAGCGCCGAGCTTCATCGGCTAAAGC
TCGCTGCACCCGTCCTGTCCATGGACTTCTGCCCTGCATCGGCACCCATC
TTTGGCGGCGGCGGCGGCGGCGGTAGTAACAGTAGTAGCAGCAGCAGTGG
TCGAGGCTTGCTTCTAGCCGGCGGCATGGACGGGAGCAGCCACCTCATCT
CCGTCGACAGCAGTAGTAGCAGTGACGATGCTGGCGACGAGGAGTATGGT
GATAGCGGTCGGGGTGATGGAGGCGGTGTCGAAGAGAAGGGGAAGAACGG
GGTGGCCTTGAAGGCGTCCATGAAGGACCACGCCAAATACGTTGTGGTGT
GCAGGTATGTCATGCATAGTCTGATGGCTAGATTCCGGTGCACAGCAAGC
AGCACGTGTATGCTTCGTGTCCGAAGTAAATAGTCCGCCGCGGAAGCCTG
CGAGATCCGCGGCCGTGTCGTGCTCGAACGGACGTGTGATGAACGAAGCC
AGAGGGCTTTTCTGTGAGGCTCTCGCTTTTTTTTTGCGTATACCTGTGCT
TTATCACCGCGGTCGCTCGTCTCTGGCTTTTTCTTTTCTCGCTGGCAATC
GGATTCAGTGCGATACAAGAAGTAGAACAGGAGAGCGAGAGGTGGGTGCG
ACCTCATCCCCTTTCAGACATATCTTTAGTTCCGAAACATGTCTGCGTTC
TTTTTCATAGTTCCAAAAGCGAAGCTGACGATCTAGGCTTCAATCGTGTA
AACAGCTCGCGTACAAGAGTTTGTTGAACGGTTTCACACAGCGCCGACCT
CAGTCAGTTATAGACTGAACAGCCTGTTTCAGACAGTTTTGAAAGTTTGC
ACATAGCGACAGACCTCAGATCCCAAATCTGAACTACGTCTGCACACGCG
AAGTATGTCTGGTGCAGCGGCACAACAGCACTGTTCCTCCCTCCTTGGTG
CAAACGTTGGTTGTCCTCGGTTGTTCGCGAGTTTTTGGTGTTTGTTCTTT
GTGCTTGATGGCGATCCATGGCATGGTGTGGTGTGGTGTGGCATGGTGTG
ACATGCTGTGTGTGCGTGCGTGTAGGAAACAAACCGAGTGGTCCCCAGTC
CCTGCCGCCATTTTAAAGCCCACGCTATGATAGATGCCTTAAGGTGTGCG
GGCAGGTACCATACAAAATGCAGTCAAACAACAAGCGGAACACAACCTCG
TTTCATAATATACTCGATGCGGCTGTGCAGATCATTTGTATATGCCCCCC
CCCGCCGTGGCGGAATCAAATCACCCTTTCAAGAGCCGATGGTGCAACTT
TCGATCGCCGAAGGCGTCATTCCTTGGGCACCAGTCCAAGAACGCCATTG
CCGACAGGAGGCGTGGTGGTACAAGTGTGCACCTATCCTTTTAGAGCCGT
GCATGGGTTTGTCGTGGTGTCGAAAGGGGGAAGTACCACTCGCCTGTCTG
TGTGTATTTGTGTGTGTGTTTACTCGCCGTACTCATGCACTTCTCTATCT
ACACACCTGAATGTACATGTATGCGTAGGCCGTGTCTTAGCGCTGTCACT
CTCACTATTGCCCACGTACAGAAACATACGAACATAGAAGTGTTGACCCG
AGCTGGTTCGGAATATATGGGATGACAACACGCAGCACACAACACAGACA
GCTCCACGAACGAGGTTTATGTGGGCATGTGTTCGTGTTTTTTATTTTTG
TATGCCTTAGAAACTCCTCTGAACTGACACCCGTGTATCCGTGCATCCCT
TATGGTGAGCTGATAAAATGACAGCGCAAAACGTACTCCATGAACGTATC
TATGCTCTCCTTTCAAAACATGCACCGGTTCCTTTCCTTCACTCCCCCCT
CCTCCCCACGACCCCCCCACTGACTGCCAGGTGGGCGCCCGACGGGAGCG
CTTTCGTGACGGCCTCGCATGACAAGGTAGTGACGCTGTACACCTTGCGA
GGCGGCGGGGATGGAGCGGGGGAGGGGGGCGTAGGCGGAACGGGGTACGA
GCAGGTGGGTACAAACGATATTACAGGGAGAGGAGAGCGAAAATCAAAGA
GGCTTTTGGGATAGACTCTTTTTTTTTTCTGGCGCGGATAGTAGTTTGAG
GGCATGGTTGACTATCAGAACGGAAACCTTTGGCGGGAACAGGCGAAGAA
GAGGCCCGCTGCTGCTGCTGGTGACGCTGCTGCTGCTGCTGCTGCTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTCTTGTTGTTCTTGTTGTTGTTGGT
GGTGGTGGTGGTGATGTTGCTGCTCCTGCAGCTCATGACAAGAAAGCATG
TAAGTGCTTCTTCGTCTTGCCGGCGGGAACTAATATGGTAGCCGTTCCGT
TGTAGGCAGATCCTGGAACATCGATGGGAGGGGGAGCCGGTACCGTCGAC
ACACATTTGCGATATGTCTGTCAAATTACCTTTGCTTCCAGTTTCTCCTT
TCGCAAGTGAAGTACAAAGAGAATTTTTTTGTATACGGAAGTTCGAGCTC
TCGGTATGCACGTACTGCTGTGCTCTATTTTGTTTCTCTATCGCAAGCAT
CGAATGGTCTATCTGTGCATGACGTTGCTATTCTCGTGGCGCAGCTTGTT
TTACCCCAACACATGTGCAAAAGCCACCCGCTCCCCACCGAAGCAACCAA
AGCGTCCCCCCACTCCTCCTCCCTGTCACTTACCGCCGGCGGCTTCACGC
AACACTCCCCCCCCACCCCCTGACGATCGTAACAGGCGACGCAGCTGTAT
TTCCCAGAGGCGGTGGAGAGTGCAGAGTTTGTAAGAGGGCAAGGCGGTGC
GTTAGAGCTGGTGGTGTCGGCTAGGGGACAGCCGCACCTCACGTACGTCG
ACGTCGAGACGCTCCAACAGCGCCGAGTGAGTGTTCGGAAAACGTATACG
TACCTGGAAACCTTTGCGGACGATGATCATGTGATGGGAGGTTGTTTGTT
CCGTAGTAGTTGACGAGGGCGACATTTGTGTTGTGAATAAAGCTGTTCTT
GTATTTTGTGATCCACGTATCCCGTTGGCAAGCCGGCTGCCCGCGAGGTT
TAACCGATCCCCTCACGGTATGTTGTTCTCGGTTTGGTGGTGGTCATTTG
GGTTTAGTTTGATATTGTTGCTGTTGCTGTCGGTTCTTATGATACATTGT
CCGGTCATGTCATGATATCATCAGAAGATTATTCATCCCCAAAGATCACG
CCACACACACGTGCGGACACACACACTTTACACGTACATACCCACCCACA
CACGATAACCCCCCCCCCGCCTTCGATGTCATCTCCGCTATCCCACCACG
GCTCGTACTAGGTGAGCTTGAACGAGAAGGAGTGGGACACGCACGTGTCC
TTCACCGTAATGTCCATGGCGGCCTCCGCCGACGGACGGTACCTCCTCGC
AGCCACCGACAAAAACAGGTACCAGTTTGTTCTACTGGCTGAAAGGATAC
ACTAGTGAGAGTAAGTCAGACCACCGACGAAGAAGGTACAAGCGTCGCTT
CCTGTGTACCAGCAAGTATACCGTACCCCGGTGCGTATACGTGTACCACT
ACTTCTGCTGTATCAGACATTTTTCTATTGATCCGACTTTGTTTTAATTT
CCCGATAGATACAGAACGGTTTTACATCCGTTGTACCAGGTATCAAACGA
TTTTACACCCGTTGTACCAGGTATCAATTTTATCTTCTACGTTTTTACTG
TGCTCGCAGTCGATGTTCTCCACGCGTCTCGACCGGAAAGAGCGAATAAC
GGCGGGGCTGTAATATGACATACTATGATATGATGTGATATAGTATGGTA
TTACGTTTCTGTCAGCGATATTTCTCTTCTACGGCAATATTCCCAGCCCG
TGGATACACCGATACACGTACATGTTGCCCGAAAGAGTTATTTTTTGTAA
TTCATCCAAGACTATTTGTGCTACGATACCGCGACTGTGACGATCACGTC
TCGGTCTGCCGCCGTTCCGGCCACACAAAATCGGCTGCGAACATATGTGG
TTCAGAGGTCTCAGTGCCAAACACGTCTCGATGTACTTACATGCGCCTCG
TATTTCGCCCCGCCAGAAACATCCTGTGGAGAGCGGGAAGCAACAACCGC
GTCCGCACCCTGATGGGACACACCGCCGACGACTACTTCCAGCCGAGGGT
GCAGTGGGACCCGTCCGGGTTGTTCTCTTACTGCAACAGCTCGGGGGACC
ACGACGTGCACGTGCATTGCCTGGCCTCCGGGTGAGTTTTTATTGTCTTG
TGAATCACGTAATCCCCCCTCGCTCCAACTTTTTGCTGCGATTTCGGGAG
CTGTATACTCCTAACAGAGTATACAGCTGGAATGATGAAACGGATACCGT
AAGTTATTTAAAAACATATTTCGTTCTTGATTGTCGGGCGGGTACGGCGG
ACACACTTTAACCGTGTTCGGCAGGAGGCATCTCAAAGTCAGTTCACACC
CCCGAGAGGTATACTGCACGCCAAAGCATTCCACACCCATACAAATACCA
TGCCATTATGCAAACATCAACATGTGTACTGCTGTGCTGCTTGTTTGCTG
TTCGTGTGGGCGATCGTTGGCTTCCACTTGCAGGCGCCTTCGATTGCCCT
CAGGGTGGATTGTTGTCGTTGTCGTTGTCGTTGGTTCTCACGTAAAGCTC
ACCGCCAAAATCGTGCCCGTGGCCACAAACCAGGAACCTCATCGTGCTCA
GAGGATAAACTAGGAAGGAGAGTGCGTGTTTTGGTTTTTCTTCCACACCC
TTCATTATTCATTGAATTTCAACTGTTTTTTCGCGTCCGAATCGATCTCG
TAGGATTCCAAGTACAGCACAAACAAGCAAACTTCGACGACGAGAGTGGA
TGCTTCGCGGTGACTATTGTGCGGAGTATTTTTATAGGAGCATTGTTCAC
ATGCATTGTTCATGTCGTACGTACCCGTGCCTCTAACACACACCTGGTAT
CCCTGGTACGGTATGGCAATGGCGAACTTTGGTGCGCAGCCGAGTGGTGG
AGAGGCTCAAGAGCCACGGCGGCGTGATACGCGACATCCACCACGACCCC
TGGACACAAGTGCTGGTCACCGCCTCTTACGACAAGACTGTCAGAGTCTG
GGGGCAAGGGCAGCAATAAGGATGAGCGGGATTGATGGCAGGTCGGGGGG
TCGGGGAATAAGTGTTGTTCATTCCGCTGCAAAATAGCTACGCAGGAACT
TTGCTGTGGGATAACACTGCTGCTGCTGTCTGTTCACTGCCGTAGCTATT
TTCATGTACGAAGACCCCGGGTATTTCACATGCGCTGCTTTGGGTGTGTG
TGTGTGTGTTTTTTTATACCGACAAAAGCTTTGGGCGGGTACCACGTGAC
GAAACTCTGAGCCCCTCTCAGATTTGTGAAATTGTGCTGCGAACACCATT
CGGGGTCATGACTTTTGTCGCCGGTGGTGCTCCTCACGCAGATCCCGGCT
CGCTACGATATCGGCAGGAGGTCTCAAGAGGGTCGTGTTCTACCTTCTCC
AGTAGTTTACATGCTATGGTTTTGCTCCAAACTGCAGAAATGCTGCGCCA
TCGCAATTGGAAGCAAGCCGCTTTTGTGTGTGTCCGGATCTCGTTTTTAG
GTCTCAGGAGACAAATTTTTCGCCAAGGTTGTGTGTGCACTCGTAGAATC
AACTAAATGGACTATAATTCGTAGGGTGTATACCTTGGTGAATGTGATAT
CCAACAAAAGATGGTAGAAATTGGGATAAGCACTACAGCGCTGACGATGG
GCTTGCAAAAGGGCTTGCAAAAGTTGCCTTAAATCGACCCAAACCAGTCT
GAACTCCAGTGGTTTACACGGTTGAACATTTTAAGCAAGTACTACTACAT
GTCTACCTCCGGAGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:262104..269569+

>mRNA_P-littoralis_Contig66.71.4 ID=mRNA_P-littoralis_Contig66.71.4|Name=mRNA_P-littoralis_Contig66.71.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig66:262104..269569+ (Pylaiella littoralis U1_48)
ATGTCGGTGCAGGTATCTCGGCTGGCTGAAGAGTCGCACGGCAACGACGA
TGGCGACGGCGTCAGCAGCGCCGAGCTTCATCGGCTAAAGCTCGCTGCAC
CCGTCCTGTCCATGGACTTCTGCCCTGCATCGGCACCCATCTTTGGCGGC
GGCGGCGGCGGCGGTAGTAACAGTAGTAGCAGCAGCAGTGGTCGAGGCTT
GCTTCTAGCCGGCGGCATGGACGGGAGCAGCCACCTCATCTCCGTCGACA
GCAGTAGTAGCAGTGACGATGCTGGCGACGAGGAGTATGGTGATAGCGGT
CGGGGTGATGGAGGCGGTGTCGAAGAGAAGGGGAAGAACGGGGTGGCCTT
GAAGGCGTCCATGAAGGACCACGCCAAATACGTTGTGGTGTGCAGGTGGG
CGCCCGACGGGAGCGCTTTCGTGACGGCCTCGCATGACAAGGTAGTGACG
CTGTACACCTTGCGAGGCGGCGGGGATGGAGCGGGGGAGGGGGGCGTAGG
CGGAACGGGGTACGAGCAGGCGACGCAGCTGTATTTCCCAGAGGCGGTGG
AGAGTGCAGAGTTTGTAAGAGGGCAAGGCGGTGCGTTAGAGCTGGTGGTG
TCGGCTAGGGGACAGCCGCACCTCACGTACGTCGACGTCGAGACGCTCCA
ACAGCGCCGAGTGAGCTTGAACGAGAAGGAGTGGGACACGCACGTGTCCT
TCACCGTAATGTCCATGGCGGCCTCCGCCGACGGACGGTACCTCCTCGCA
GCCACCGACAAAAACAGAAACATCCTGTGGAGAGCGGGAAGCAACAACCG
CGTCCGCACCCTGATGGGACACACCGCCGACGACTACTTCCAGCCGAGGG
TGCAGTGGGACCCGTCCGGGTTGTTCTCTTACTGCAACAGCTCGGGGGAC
CACGACGTGCACGTGCATTGCCTGGCCTCCGGCCGAGTGGTGGAGAGGCT
CAAGAGCCACGGCGGCGTGATACGCGACATCCACCACGACCCCTGGACAC
AAGTGCTGGTCACCGCCTCTTACGACAAGACTGTCAGAGTCTGGGGGCAA
GGGCAGCAATAA
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