mRNA_P-littoralis_Contig66.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.29.1
Unique NamemRNA_P-littoralis_Contig66.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 8.240e-19
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 WNTRSVDWL-DVAGNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQAREGNTIIL 345
            WN R  D +    GNV +PA  PY+  +ARL+ G++ +SCQA+RNFS+L  ++  +R   L RK+E+M+L+R+NR  +    + +  ++  +AK   +A+ SVA Q+ R   +I L
Sbjct:  152 WNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDL 267          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.530e-18
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 WNTRSVDWL-DVAGNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQAREGNTIIL 345
            WN R  D +    GNV +PA  PY+  +ARL+ G++ +SCQA+RNFS+L  ++  +R   L RK+E+M+L+R+NR  +    + +  ++  +AK   +A+ SVA Q+ R   +I L
Sbjct:  717 WNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDL 832          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.380e-18
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 WNTRSVDWLDVA-GNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQAREGNTIIL 345
            WN R  D +    G V +PA  PY+  +ARLY G++ TSCQA+RNFS+L  ++  +R   LP K+E+M+ +R+NR  +    + +  +   KA     A++S+AAQ+ R   T+ L
Sbjct:  534 WNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 649          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.560e-18
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 WNTRSVDWLDVA-GNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQAREGNTIIL 345
            WN R  D +    G V +PA  PY+  +ARLY G++ TSCQA+RNFS+L  ++  +R   LP K+E+M+ +R+NR  +    + +  +   KA     A++S+AAQ+ R   T+ L
Sbjct:  729 WNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 844          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.240e-14
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 WNTRSVDWL-DVAGNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQAREGNTIIL 345
            WN R  + +    G V APA  PY+  +ARL+ G++ TSCQA+RNFS+L  ++  +R   L RK+E+M+L+R+NR  +      +  +A  +A    +A+ S  AQ  R    I L
Sbjct:  412 WNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLAEVRALDAAVAQARAMAAKSARESGIAQADRSNKEIDL 527          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.440e-14
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    7 TRSVDWLDVAGNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQAREGNTIIL 345
            T SV      G V +PA  PY+  +ARLY G++ TSCQA+RNFS+   ++  +R   LP K E+ + +R+NR  +    + +  +A  KA     A++S+AAQ  R   T+ L
Sbjct:  328 TSSVS--PTTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVAEVRELDAAVAQAKATATKTAQSSMAAQGERANQTVDL 438          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.470e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 WNTRSVDWLDVAGNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQARE 327
            W  RS          V P   P++ L+ARL+ G+++TSCQA+RNFS+L  ++  +R+  LP K+E+++ LR+NR +IP           +KA HDA      AA + +E
Sbjct:  392 WQRRSKPRTCAETGEVEPG-LPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPE----------VKALHDAVEANKAAAARCQE 489          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.770e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 WNTRSVDWLDVAGNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQVLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKASVAAQQARE 327
            W  RS          V P   P++ L+ARL+ G+++TSCQA+RNFS+L  ++  +R+  LP K+E+++ LR+NR +IP           +KA HDA      AA + +E
Sbjct:  720 WQRRSKPRTCAETGEVEPG-LPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPE----------VKALHDAVEANKAAAARCQE 817          
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-9
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 WNTRSVDWLDVA-GNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLK--------QVLSGMRAGTLPRKIEQMLLLRVNRRHIP 234
            W     D LD   G VV  AR+P++ L+ARLYAG+D+TS Q +R+F             V S  R G  P +IEQMLL+R+NR  +P
Sbjct:  814 WRLHGTDTLDSGTGEVVLAARWPHLALVARLYAGIDSTSRQGERHFGGGSGGGAELGAAVRSLQRGGMPPWRIEQMLLVRLNRHVVP 900          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KJT6_9PHAE8.240e-1937.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE5.530e-1837.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE7.380e-1837.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE7.560e-1837.93Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.240e-1437.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE5.440e-1437.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE5.470e-1136.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE5.770e-1136.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D7G031_ECTSI1.300e-943.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:74433..74780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size349
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791374.9225492-CDS-P-littoralis_Contig66:74432..747801680791374.9225492-CDS-P-littoralis_Contig66:74432..74780Pylaiella littoralis U1_48CDSP-littoralis_Contig66 74433..74780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.29.1prot_P-littoralis_Contig66.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 74433..74780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.29.1

>prot_P-littoralis_Contig66.29.1 ID=prot_P-littoralis_Contig66.29.1|Name=mRNA_P-littoralis_Contig66.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
WNTRSVDWLDVAGNVVAPARYPYVGLLARLYAGVDTTSCQAKRNFSSLKQ
VLSGMRAGTLPRKIEQMLLLRVNRRHIPGFAKEERELAALKAKHDANAKA
SVAAQQAREGNTIIL*
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mRNA from alignment at P-littoralis_Contig66:74433..74780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.29.1 ID=mRNA_P-littoralis_Contig66.29.1|Name=mRNA_P-littoralis_Contig66.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig66:74433..74780+ (Pylaiella littoralis U1_48)
TGGAATACGCGGAGCGTGGACTGGTTAGACGTCGCAGGGAACGTTGTAGC GCCTGCCCGCTATCCGTATGTGGGGTTGCTAGCACGTTTGTATGCAGGCG TAGATACCACCAGCTGCCAAGCGAAGAGGAACTTTTCCTCCCTCAAGCAG GTCCTTAGTGGCATGCGTGCCGGTACCCTGCCGCGCAAGATCGAGCAGAT GCTGTTGCTCAGGGTTAACAGGCGCCATATCCCCGGCTTTGCGAAAGAAG AGCGAGAGTTGGCCGCGTTGAAAGCAAAGCACGACGCAAACGCAAAGGCA TCGGTTGCCGCCCAGCAAGCCAGGGAGGGTAACACCATTATCCTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:74433..74780+

>mRNA_P-littoralis_Contig66.29.1 ID=mRNA_P-littoralis_Contig66.29.1|Name=mRNA_P-littoralis_Contig66.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig66:74433..74780+ (Pylaiella littoralis U1_48)
TGGAATACGCGGAGCGTGGACTGGTTAGACGTCGCAGGGAACGTTGTAGC
GCCTGCCCGCTATCCGTATGTGGGGTTGCTAGCACGTTTGTATGCAGGCG
TAGATACCACCAGCTGCCAAGCGAAGAGGAACTTTTCCTCCCTCAAGCAG
GTCCTTAGTGGCATGCGTGCCGGTACCCTGCCGCGCAAGATCGAGCAGAT
GCTGTTGCTCAGGGTTAACAGGCGCCATATCCCCGGCTTTGCGAAAGAAG
AGCGAGAGTTGGCCGCGTTGAAAGCAAAGCACGACGCAAACGCAAAGGCA
TCGGTTGCCGCCCAGCAAGCCAGGGAGGGTAACACCATTATCCTCTGA
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