mRNA_P-littoralis_Contig66.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.26.1
Unique NamemRNA_P-littoralis_Contig66.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.26.1 vs. uniprot
Match: A0A6H5K7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7C0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.600e-13
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    4 TGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFMGGSNRGXXXXXXXXXXPMPPANLSQHFGGQG 219
            + Q+   AVW HDK+MS++EEGQ+ DR +IVKELS ISKF+ G  R           PMPP   S HFGG G
Sbjct:  174 SNQIDSGAVWVHDKLMSTTEEGQKTDRDQIVKELSSISKFLTGPKRAA---------PMPPIAFSPHFGGYG 236
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BLAST of mRNA_P-littoralis_Contig66.26.1 vs. uniprot
Match: A0A6H5JHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.380e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    4 TGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFMGGSNR 141
            + Q+   AVW HDK+MS++EEGQ+ DR + VKELS ISKF+ G  R
Sbjct:  121 SNQIDSGAVWVHDKLMSTTEEGQKTDRDQKVKELSSISKFLTGPKR 166
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BLAST of mRNA_P-littoralis_Contig66.26.1 vs. uniprot
Match: A0A6H5L1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T2_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.700e-8
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   10 QLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 126
            Q   A +W H K+MSSSEEGQQVDRA ++KELS ++KF+
Sbjct:   52 QYDAAGMWLHGKLMSSSEEGQQVDRALLIKELSGVAKFI 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7C0_9PHAE1.600e-1351.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN8_9PHAE3.380e-856.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1T2_9PHAE3.700e-861.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:67717..68025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size311
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791374.8866947-CDS-P-littoralis_Contig66:67716..680251680791374.8866947-CDS-P-littoralis_Contig66:67716..68025Pylaiella littoralis U1_48CDSP-littoralis_Contig66 67717..68025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.26.1prot_P-littoralis_Contig66.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 67717..68025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.26.1

>prot_P-littoralis_Contig66.26.1 ID=prot_P-littoralis_Contig66.26.1|Name=mRNA_P-littoralis_Contig66.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFMGGSNRGGG
GSSAYQQPPMPPANLSQHFGGQGRQSGWNGPGAPGHYAPRPRSKQAKCFK
CKN
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mRNA from alignment at P-littoralis_Contig66:67717..68025-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.26.1 ID=mRNA_P-littoralis_Contig66.26.1|Name=mRNA_P-littoralis_Contig66.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig66:67717..68025- (Pylaiella littoralis U1_48)
ATGACCGGCCAGTTAGGCATCGCCGCCGTCTGGTTTCACGATAAAATGAT
GAGTTCCTCGGAGGAAGGGCAACAAGTAGACCGTGCTAGAATCGTGAAAG
AGTTGTCGCACATCTCCAAGTTCATGGGCGGCTCGAACCGCGGTGGGGGA
GGCAGTAGTGCGTACCAACAACCCCCTATGCCGCCGGCGAATCTTTCGCA
GCATTTTGGAGGACAAGGGCGACAATCTGGTTGGAACGGTCCGGGCGCTC
CCGGGCATTACGCTCCCCGGCCTCGCTCTAAGCAGGCCAAGTGTTTCAAA
TGTAAGAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:67717..68025-

>mRNA_P-littoralis_Contig66.26.1 ID=mRNA_P-littoralis_Contig66.26.1|Name=mRNA_P-littoralis_Contig66.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig66:67717..68025- (Pylaiella littoralis U1_48)
ATGACCGGCCAGTTAGGCATCGCCGCCGTCTGGTTTCACGATAAAATGAT
GAGTTCCTCGGAGGAAGGGCAACAAGTAGACCGTGCTAGAATCGTGAAAG
AGTTGTCGCACATCTCCAAGTTCATGGGCGGCTCGAACCGCGGTGGGGGA
GGCAGTAGTGCGTACCAACAACCCCCTATGCCGCCGGCGAATCTTTCGCA
GCATTTTGGAGGACAAGGGCGACAATCTGGTTGGAACGGTCCGGGCGCTC
CCGGGCATTACGCTCCCCGGCCTCGCTCTAAGCAGGCCAAGTGTTTCAAA
TGTAAGAAT
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