mRNA_P-littoralis_Contig66.200.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.200.1
Unique NamemRNA_P-littoralis_Contig66.200.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:647026..647752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size691
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.6272218-UTR-P-littoralis_Contig66:647025..6472461680791373.6272218-UTR-P-littoralis_Contig66:647025..647246Pylaiella littoralis U1_48UTRP-littoralis_Contig66 647026..647246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.6418736-CDS-P-littoralis_Contig66:647246..6475401680791373.6418736-CDS-P-littoralis_Contig66:647246..647540Pylaiella littoralis U1_48CDSP-littoralis_Contig66 647247..647540 -
1680791373.6529095-CDS-P-littoralis_Contig66:647578..6477521680791373.6529095-CDS-P-littoralis_Contig66:647578..647752Pylaiella littoralis U1_48CDSP-littoralis_Contig66 647579..647752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.200.1prot_P-littoralis_Contig66.200.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 647247..647752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.200.1

>prot_P-littoralis_Contig66.200.1 ID=prot_P-littoralis_Contig66.200.1|Name=mRNA_P-littoralis_Contig66.200.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
GESGLTPARKTPPTRFGSYLQQTLPRQRGNGDVVLLCKPRCTRCTDELAT
SLDESVLTNHYFVVFLCWRNTTSCCALRSEHQPFFVYNIRYILLNVFNSN
AHCSQPRSNAAVVHRPYSSSSRGASAYTTTTTTTNYLVSVFFCYCCRSSQ
SSLWL*
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mRNA from alignment at P-littoralis_Contig66:647026..647752-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.200.1 ID=mRNA_P-littoralis_Contig66.200.1|Name=mRNA_P-littoralis_Contig66.200.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=727bp|location=Sequence derived from alignment at P-littoralis_Contig66:647026..647752- (Pylaiella littoralis U1_48)
GGTGAGTCCGGCCTTACACCCGCCAGAAAAACCCCCCCAACTCGCTTTGG
GTCATACTTACAGCAGACCTTGCCTAGGCAGCGAGGGAACGGAGATGTTG
TGCTGCTTTGCAAACCCCGTTGCACCCGTTGCACGGACGAGTTGGCGACG
AGTCTAGACGAATCCGTGCTGACAGCAGTAGTCAGTGTGGAACTCGAACC
GTTTGTTTGTAGAATCATTATTTTGTCGTTTTTTTGTGCTGGCGGAACAC
CACCAGCTGTTGTGCTCTTCGCTCTGAACACCAGCCCTTCTTCGTATACA
ATATCAGGTATATACTACTCAATGTTTTCAACAGCAACGCACACTGCTCT
CAACCCCGATCCAATGCTGCTGTAGTACACCGTCCATACAGCAGCAGCAG
TAGAGGCGCATCGGCGTATACTACTACCACTACTACTACGAACTACCTGG
TATCTGTATTCTTCTGCTACTGCTGTCGCAGCAGTCAGTCGTCGTTATGG
TTGTAGGGCATTGAAGCCTTCGTCGCCTTTTTCATATATCTACAGATTTG
GTGGTGGTGGCGTCGCACTGGCCTGCACTTCTCTTGGATGTTGCATAATA
AACAGTTCGAAGGCGATCTTCGCTATGAGTACTGCTGCTGTACTGAATGT
GTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAAGCAGATTCG
GCTTCGCCGACGAGGGTAGGGACCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:647026..647752-

>mRNA_P-littoralis_Contig66.200.1 ID=mRNA_P-littoralis_Contig66.200.1|Name=mRNA_P-littoralis_Contig66.200.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig66:647026..647752- (Pylaiella littoralis U1_48)
GGTGAGTCCGGCCTTACACCCGCCAGAAAAACCCCCCCAACTCGCTTTGG
GTCATACTTACAGCAGACCTTGCCTAGGCAGCGAGGGAACGGAGATGTTG
TGCTGCTTTGCAAACCCCGTTGCACCCGTTGCACGGACGAGTTGGCGACG
AGTCTAGACGAATCCGTGCTGACAAATCATTATTTTGTCGTTTTTTTGTG
CTGGCGGAACACCACCAGCTGTTGTGCTCTTCGCTCTGAACACCAGCCCT
TCTTCGTATACAATATCAGGTATATACTACTCAATGTTTTCAACAGCAAC
GCACACTGCTCTCAACCCCGATCCAATGCTGCTGTAGTACACCGTCCATA
CAGCAGCAGCAGTAGAGGCGCATCGGCGTATACTACTACCACTACTACTA
CGAACTACCTGGTATCTGTATTCTTCTGCTACTGCTGTCGCAGCAGTCAG
TCGTCGTTATGGTTGTAG
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