mRNA_P-littoralis_Contig658.33.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig658.33.2
Unique NamemRNA_P-littoralis_Contig658.33.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig658.33.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig658contigP-littoralis_Contig658:154880..160489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size254
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.3716843-CDS-P-littoralis_Contig658:154879..1549601680791371.3716843-CDS-P-littoralis_Contig658:154879..154960Pylaiella littoralis U1_48CDSP-littoralis_Contig658 154880..154960 -
1680791371.3888626-CDS-P-littoralis_Contig658:159972..1600321680791371.3888626-CDS-P-littoralis_Contig658:159972..160032Pylaiella littoralis U1_48CDSP-littoralis_Contig658 159973..160032 -
1680791371.4004252-CDS-P-littoralis_Contig658:160378..1604891680791371.4004252-CDS-P-littoralis_Contig658:160378..160489Pylaiella littoralis U1_48CDSP-littoralis_Contig658 160379..160489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig658.33.2prot_P-littoralis_Contig658.33.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig658 154880..160489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig658.33.2

>prot_P-littoralis_Contig658.33.2 ID=prot_P-littoralis_Contig658.33.2|Name=mRNA_P-littoralis_Contig658.33.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MIFNYLGIIEEILTRKSAANSRAKDVSVPDVVNVYAKAPFKSVPSHTTVR
EYLRICSRNRSSDSVSVVCHGTLPAGIPADTTPQ
back to top

mRNA from alignment at P-littoralis_Contig658:154880..160489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig658.33.2 ID=mRNA_P-littoralis_Contig658.33.2|Name=mRNA_P-littoralis_Contig658.33.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5610bp|location=Sequence derived from alignment at P-littoralis_Contig658:154880..160489- (Pylaiella littoralis U1_48)
ATGATTTTCAACTACCTTGGCATAATCGAGGAGATCTTGACCCGGAAGTC
CGCCGCCAACAGCAGGGCGAAAGATGTCAGCGTTCCCGACGTCGTAAACG
TGTACGCAAAGGTGAGCGTTCTCCGTTCTGTATTTGGTGGAATTACCTCC
CATTAGACTATGTGTTATCATGTTACCTCCTCCTTGCCTCATTTGGTTGC
GCGATTGGAACGGACAAACGGCAGGTGGGGGCAGCGATCAGGTTAACATG
CATGTCCCGCCAAACTTGATGAAACTCGACCACCACAAGTTTTTCTATTC
CGTGGAACAAAGCACTCGTGTGTCGTACTCGCCACCCTGCTCCCGCGTAT
GTCAGCTGATGTCTTTCTCGTGTTGGGGAAGAGACCAGATAGACATCTAC
CATTATCATCTATCAGTATTGTGACCAAGAGTACGTTTCTCACCCATCTA
ATTTCAGGCTCCGTTCAAGTCGGTGCCCAGTCACACCACGGTCCGGGAGT
ACCTCCGCATCTGCTCGGTGATAAGCACCGAGGCTCTAAAGGCGTTGAGG
TCGATGGAGGAACAAGGTCTCCAAGGTGTTGAGCGCATCACGAAGACCTT
CCTCCTGAAAGACAAGGAATTCAGCTCGTTGCGAGAAAAGCCACAGCAAC
AATCGCTGTATCTCCAAATATATGCAAGGTGATGTCATGAGGAAATCTTC
CGTTTACCATTGAACACAACGCTAAGGTTGACACAAATTTAAACGTCAAT
AGTGTGTGCTGTCTTAACATGCAAACCTTATCAATCGCAATTTGACTACA
TTGATTTGGAAACCTACATCCGGAGCGCCCCTACATGGTAGACATGCTGT
ACTAGAACACCCTTCGACGGTCTCAGACACCGTCAAACAGAGATCCGTTA
CCCGACGAAAATAGTGATGTAACCCAACCGTGCGCATATTGGGGCGCCAA
CAACCTGCCCCGTCCGTCGCCCCGACATGGCCTAGAGCAACATATGATAG
GCTGGGTGTTGATCCTTTATTTCTTCCCGATAACTAGTAAATCGTCTCTC
TCTCATGTACTATTCCAGCTTCCAAATTACACGTTTATTTTTTTACATTT
GGAAAGGTACCCGAAAAACAAGGAGGGAGTCATTGACCTGCAGGCGGTCA
CCAAGCAGGCGAAGGCCGTTGCAGCGTGGCGTGCGGGGGTCGAGCTCGTC
GTCCCGAGGAATGTGTGGTCGACGAAGATGGCAGAGTGAGTACTTCTCTG
CTCACAATCTAGGCGTTTGTTGTGTAGTAAGGGCGATCACCCAGCCCCCA
TCATCACTCATCTCGCGCTGCCCAGCTGTTTCACTTATTGTTTGTTTTTT
TTCGTTGTAGCGAAACGATCCGCGTTCAACTGTTCGCACGCCACGGCGCA
TTTAACAGGATGGTCGACAACTATGCTTTTGCGCATATTGGGGACTACGC
GCACTACTTGAAGCCCCACCTTGCCAGGATCGACAGTGACGTAAAGAAGC
TGGAGGATGGCCTCCCGGCGCACAAGCCGGCGCTCTCTGGCGAGCAGCTC
GGCATCGTAAGGGCGAAGCCTATTTTGGCGCTTAAAAATGTGAGATGGCA
CAGACACCAACGTACGCCGCGACAGGGCACTCAATACTATATAAAATGGG
AAACGACCTCCAGTGAACGTCATGCGAAGTTGACATGCGACCTTTCCAAG
TGCTCACTCGCGTGCAACATTACATCCAGTGTGCAAAATTACTTACCCAT
CTTTCCGGGTGTCGTTTTTGCTTGTGCATCAGGCCATTGAAAACGACTCC
AACCTTCGTGAGCATCTGGAACAGTACCTCGCCAAGCTAGCGGCGATCGA
AAACGAAGTAGCAGGCCTAAAACTCCAAGTCGTTCCCCATGCGGGGCCCC
GGAACCCGGCGAGAAGACCCAGAGGAGCGAGAAGACCAGCAATAAAAACG
GCGGCGGTTCCGAGGACGAGACAGAAGATGAGCCTCTTCTGTGCGCCATA
TGCACGCCTCCTGTTACTTCACGGTAAGCCTCATTCACCAGGATCCTCCC
CCCCCCCCCCTTCCCCCTCATCTAATCCCAGCCCAAAAGTAAAGAAACTT
GGATTTTTCCCCGGGAGAATGATGTCCCGATGTCTGTCGCCTGCGGTACT
TGTCGAAGCGCGTTTTAAGTCGAGGCTCATGAGGCCGAATATTTCGGTTT
CTTCTGGCACTCTGTTGCATGAGGAGGGTGTGTCCCATGAGGGGTGGCAT
GCATATCTTTGCCTCCCATCCATTTTGGGGTTGAGGTTGTACGTTCGCAT
CTTCGAGTGGTGCCTTGTTTGCTGCTGCCTGCTCCTGGAGGAGCAGCATG
TCAAAGCAGAGACGGAAACCCGTTCATCAAGTGAAAATACGACTGTTTAT
GTTCTTTAATTTCCGGCACTCACTACTGGGCGGGCGTTCCCTGTTCTTCG
ATGGGAGGTATTATTCACCGGAAGGGGCCAAGCATTCCCACGTGCTTTCC
TCGCTTACTTTTCTCCTCAACTTTACTTCGTTCTTCGCGAATTCGACGGG
AGCTAGAGAGAGTTCCGTATGCGACGTGTTTCTGGTGCGTGCAACAGTGT
CGTTTGGGGTTTCGCCCCTGCGGTCATCATATTTGAACCCCCCCGGGATG
ATCTACCCCAGTGACATGAACAAGGGAGTATCGCTCAAGCATGTATGTAC
AAGCGTGAGCATGAGTGCGTAAACAACGTTTTCAACCGATCAAGATACGC
CCAACACATACATTTGTTTGCCGCCGCGTTTGTGGATGATGTGAAGGTAC
AAGTGCACGAGCTGCGGCACCATCCACACAGGCGGATGCTCCGAAACTTA
CGCCGGAGACGAAGGCGACGAAGAAGCAAACGACCGCAGCAAAGTTCGAC
GGTGCAAGGACTGCGACAGGACGAAAAAGGGAGAGGGGAGCAAGAAACGT
AAAGCAGGGGAGGGCGAAGAACAGAGTGGCTCCGACAGCGAAGACAAAGA
AGGAGAGGAGAGCGCCTCAACCAGAGCTGCGGGGAAGGGGAAGGGGAAAA
GTAAGAAGAGCAGCGGGAAGAAGCCTCGACGCGCGGCGACGGGGGCATCA
TCAGTTTCCCCGTCCAAGCTGCCAAAAATCCCTTCCCAGTCTGGCCACGA
CGGCGATATCCAGATCCAGAGAAGGTGAGGCGAGCTCATCCTTTGACTAC
AAGAGCGGTACTGAAGACGCGTTCACGGCTTGTGCACAAGGCGACAACCG
CCCGCGCCTGGGGTGCTACTTTGGTGATTTGTTGGTCTGCGCAAAATGGG
TCGTGAACGATCGAATGTTCAATGTTCTTCGGCAAAAACGGTCGTGTTCA
AAATCAAAGTGCACGGGACACATGTCGCACAGGCGCCCTTACCTATCCAT
GCCCTGCCCTGCGGATGTTGGTGTGTACTTCGTATTTCGGTAGGGCTGAA
AGCACCCGTGTGCACCAAATCAGGTCGCCGCTGAGCACGGACTTTCCGGA
GAAGGATCTTGACGACGTTCAGCTCGACAAATTACCGATGCTGATGTTCA
TGTGCCTCAACCGCGCAGACCATCTACTTCAGGACAACTCAGCTGCCTCT
ACCCGCCTGGGCCACGTCATCTACCACCTTTGCAAGAATCAACTTCACCC
CAAAGGAACCGTCATCGTTTCTACGCCAGCCCCGTTCTACGCGCATGCAT
CCAAAGTAGCCGGTGCGTGCGCCGCCTGGTTATCCGCCTCTTCCTCCATG
GATGGTGCATGTGTAGTCATCCACATAATTGGTGTGTTACAACACGGGCG
CGTGCCTAACGTTGGTTTGGTGGAAACAGCCAAAATAATACGAAACTTAA
CGCCTTGCTTGCTTGTATTTCGGGGTTTTCATGCGCCCAGCGTATATGAA
ACTCTGCTTCCATGCCTTGTATCCCGTCCTCTTACATGTTGCTTTGCCTC
CATGCCTCGTACAATTCTCTTGTGACGTGCAGGCTATCTACAGCAGCCTG
GGGTAGGTCTCGTGGTCGAAGACTCGGGGATCATTGTGGAGTACGGTTCT
CGGGGAGGGGGCTCACTGCGCAGCACAAGAAGAAGTACATCCCCGGTGGG
GTCGACACATACATCGTTGCCCACGCCAACACCAAGACCACCAACGGCAC
GCTGGAGTTTACCTGCAACGAAGAGGTGACGTGCCAGAACTTCCGGGACC
GAGTCAGAGCCACGGAAACCGTACGTACTAGCTCGAGCACCACGCCACGC
TGTCCTACTCCTTTGATCACGGACGTGCCGTACAAGGGGTCACAGAGAGT
TTTGCCCGACAACGTGGTCCGATTCGCTATACAGCGGTGAGTCTAAGGAT
TCAAGCGTGGCGTCTTTTGTAGGCACATTTGTACTTCGAAGTATATTGTT
TATATTTACTTCACTTTTTCTGTTTATTCCACCGCCTTTGAGCGTCCGCC
ATCGGCGACGACCCGGGACTTTGTACCGTAGTGTTCCTATCACAACGCGA
GCGGGCTCTTTCCTACTGTGTGCGAGAACTTCGAAAAATATGACACTGCA
TATAAAGGGAAGGAAAGATCCCGATCATGTGCCGCTACTCGGCTCAGGAA
GTGGCGACTACAAGAGTAAATGTACGGCTTCTTTTTCATAGCCAATTCGA
GTATCAACAAAGTTCGATCAATACTGTATTTTTCTGAACTTAAGATGTGC
ACTCACTCGTGGTTACGGTGTCTGCCACACATGGGTTTTCACATGTGTCC
CCTGCGCAGGTTCACCCAACGGGAGGACACGGTTGCTACGTTCACGGCAG
ACTGCGACGGGGTGGCGGAGAATGCCCTGTTCTACGGCCGAAAGTTTGAG
GGCTTCGTCGCCAACCCTGACAAAGTCGATGAGGTCGCAGGGCGTGTGGA
GAACGCCTTCGACCAGGCCTGGAGGATGGGGAAATTTAACGTAAGATAAC
GCCACTCAGATACAGCACCGAAATTTCCTCGGGGTTTATGTGCGCTTAGA
GCCTAATATTTCTGCCATTATTATCGCTGTCTCCAATACACAAGGTTTTG
GCTTCGCGTGTCTCCGTTTTGTGTTTACCTGTTGTATTGTGCTTATGAGA
CCCTGATGGGTATCGTGCGTGCCCGACGCGTTCATGTGGCCCATTCTTTG
TGGTGAATTATTCTTTATTTTTCGGACCTCCGCTACCTTCTCCCACTGAC
GTGACGTATTTTGCGCCGTGTTTTGTTTCACATACGTATGCCCCCGCTGC
CTTGTGAACGCGGGTGTTATTTGTTATTGACCGCGTATTTCCTAAGGTCA
AACAACGTCTTCGACAAAAACTTTTACCTTCAGTCAAACACTGCCGCCAC
ATTGTCTAAGACTTGCAACCCGACGAAGGGCCGGCGGGGTAGGGTATCGG
GGGGGGCGGGGGGGGAGGCCGGGGGCGGAATATTTTCTCTGTTCAAATCG
TACAGGAGTGATGGTACGACGGATGCATGTAAACTGGCTCATGAACTTAT
TCTACCGCCGGCTTTCCGTACCTTCACAGCGCAACCGGTCCAGTGACTCC
GTATCTGTCGTCTGCCACGGTACGCTGCCGGCGGGCATCCCGGCCGACAC
GACTCCACAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig658:154880..160489-

>mRNA_P-littoralis_Contig658.33.2 ID=mRNA_P-littoralis_Contig658.33.2|Name=mRNA_P-littoralis_Contig658.33.2|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig658:154880..160489- (Pylaiella littoralis U1_48)
ATGATTTTCAACTACCTTGGCATAATCGAGGAGATCTTGACCCGGAAGTC
CGCCGCCAACAGCAGGGCGAAAGATGTCAGCGTTCCCGACGTCGTAAACG
TGTACGCAAAGGCTCCGTTCAAGTCGGTGCCCAGTCACACCACGGTCCGG
GAGTACCTCCGCATCTGCTCGCGCAACCGGTCCAGTGACTCCGTATCTGT
CGTCTGCCACGGTACGCTGCCGGCGGGCATCCCGGCCGACACGACTCCAC
AA
back to top