mRNA_P-littoralis_Contig655.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig655.8.1
Unique NamemRNA_P-littoralis_Contig655.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig655.8.1 vs. uniprot
Match: D7G5H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.300e-28
Identity = 76/139 (54.68%), Postives = 102/139 (73.38%), Query Frame = 1 
Query:    1 MIKTLSKTHKVFAEFEPNMPRVAARASVKPTKKA--QSASAITIKSKRPKGIQRADQQTPQREDDALDADALKCPNLEAFLDAVTSQRERTGAVKWSPEGEEEADWIEAVVERLRKAKQEASAIDGVKAARESTKAARA 411
            M++ LS  H VFAE+EPNMPRVA+   +  ++K+  +SASA++  S R KG++ ADQ  P++E+  +  DAL+CPNLEAFLD VT+ R+RTGAV+WS EG+EEADWIEAV+E+LR AK+ AS I   + A    KAA A
Sbjct:  452 MVQYLS--HPVFAEYEPNMPRVASAPGLDQSRKSIVRSASAVSP-SARSKGVRWADQVVPKQEEQKV-LDALECPNLEAFLDEVTNHRKRTGAVEWSAEGQEEADWIEAVLEQLRTAKKTASGIAKARNALTKNKAAAA 586
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig655.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5H7_ECTSI2.300e-2854.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig655contigP-littoralis_Contig655:79590..82450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size425
Hectar predicted targeting categoryother localisation
Exons3
Cds size423
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig655.8.1prot_P-littoralis_Contig655.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig655 79590..82450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791368.3841794-CDS-P-littoralis_Contig655:79589..797331680791368.3841794-CDS-P-littoralis_Contig655:79589..79733Pylaiella littoralis U1_48CDSP-littoralis_Contig655 79590..79733 +
1680791368.400234-CDS-P-littoralis_Contig655:80266..804141680791368.400234-CDS-P-littoralis_Contig655:80266..80414Pylaiella littoralis U1_48CDSP-littoralis_Contig655 80267..80414 +
1680791368.4103775-CDS-P-littoralis_Contig655:82319..824501680791368.4103775-CDS-P-littoralis_Contig655:82319..82450Pylaiella littoralis U1_48CDSP-littoralis_Contig655 82320..82450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig655.8.1

>prot_P-littoralis_Contig655.8.1 ID=prot_P-littoralis_Contig655.8.1|Name=mRNA_P-littoralis_Contig655.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MIKTLSKTHKVFAEFEPNMPRVAARASVKPTKKAQSASAITIKSKRPKGI
QRADQQTPQREDDALDADALKCPNLEAFLDAVTSQRERTGAVKWSPEGEE
EADWIEAVVERLRKAKQEASAIDGVKAARESTKAARARQGW
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mRNA from alignment at P-littoralis_Contig655:79590..82450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig655.8.1 ID=mRNA_P-littoralis_Contig655.8.1|Name=mRNA_P-littoralis_Contig655.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2861bp|location=Sequence derived from alignment at P-littoralis_Contig655:79590..82450+ (Pylaiella littoralis U1_48)
ATGATAAAAACTTTATCCAAAACGCACAAGGTGTTTGCCGAGTTCGAGCC
CAACATGCCGCGGGTGGCCGCGAGGGCGAGCGTGAAGCCGACAAAGAAGG
CCCAGTCCGCGTCGGCCATCACAATCAAATCGAAACGCCCAAAGGTATTT
TGAAAGTATTTTCCGTAAAAATTACTTTTGTGATTCCTCGAAAACAAAAT
CGCGACACGTGTGTGTGTGGAGGTCAACACATTTCTTGTGGCCCCCACGC
ATGTGTTTGAAACTTGGTGTCGAAGAGGGTTACTCAGCAGCAGCAGTCAG
TCGCTTTTCCTCCGCAGCAGTCAGTCGCTTTTGTGCTACTACGATACACA
CGTGCGTGGCGATGCGCACCCGGGAGACATGCGATGCGCAGCTCAGAAAG
AAACGCCAAGGTTCCAGATGTATGTCTTGATGTGGCGTTTGCTTGACTAG
TGTTGTCGTCAAATGATCGCAGGAGATCTGATGGGTACGGTAGGCCACGA
GTAAAAACTACATGCATGTGTTTCGCAAAATTGTGATTTTGGTGTGTATG
AAGAGATGACGTCGTGGCCTAGGATACAAATAGTAACGAATGATGCCGTC
AGCATGTAACATTTTTGCTTTCGGCATGTGACATGTTCACCGTTGCCTAT
TCCGCACTGGTACTGCGGTGCACCCAGGGCATCCAGAGGGCAGACCAGCA
AACTCCTCAGAGGGAGGACGATGCGTTAGACGCAGACGCTCTCAAGTGCC
CGAATCTGGAGGCGTTTTTGGACGCAGTTACCAGCCAGCGCGAGAGGACG
GGCGCCGTGAAATGGTCGCCCGAGGGTAAGAGGACGCACGGAACGTGGCG
CACAGATACTCATGGTAATACTATGAGAAGAATATTAAAATAGTTATCTA
GAATACACACACCAACAATGTGGTTCTCGCTTTCTTCAAATAATTCTAAG
TCGGCAAGACTGTATGATTCTGCGTTAATAACTGATGATATTGTTTTGAA
GATTTTATGTATTTTTTGTGAACCCATTTCGTCTACCCGCCGTTGACGTC
GCGGCAGCAGAGGGTCCCAAGGGAATGATGGTCGAATTGGCCCACGGCCA
AGGGCAGGCAAGGTTTTCTTCCTTAGATTTAGCAAGGAGAGTTTGGACTG
AAAAAAACTATTATCGACCAGACTGGCAGGAGGTTATAGCAAACAATGGA
GAAGTCCCCATCGACCGTGATGCAGTATTTCACGAAATACCCCGACGAGA
GGGTCTGCATCTTCTATCTTTCCTTCTGATTGCTGTTCTTGCGTACAATG
GTTCCAACGCCATGTGACCAAACCCCCTCGTGCTAAGGGTGGGTTGTGAC
AAAAAGCATGTGCTGCCTGTCCATATAATTTTTGATTGGGGGAATGAAGG
GACAACCGTAGGCAGCATGCTATTTCACACACCCCGCCCGTGGAGTAGTC
ATGAGATTTTGCATGCCCATTTCTCCGCAAGCATGTGACGGGCGTCAGAG
CAGACAACGGTGCCCTTGGAAGTATCTCGTCGAGCGCTTTTTCGAAAACA
TATCTAACATGATGTCCGGTTTCGTCACGGATTTGCACTCATGCATGCAT
GCATACATGCAACGAGAACTAATTTGAAGCAATATTTCGGATACAGTTGG
TCTCCAAACCGTACTCAACATGAGCTTGTGTGTGGCCACGCAACAGCTAC
GCAATGTTCGCTGATATCAAAAAGCATTTGTTTGCGTGCAGCGCAGATTT
GTGGACGATGACTTCATGCACCATGAACAGCAATTACCGTTACTAATTGC
TACTAGCAATTTCGTGTCGTCTCTGCTGACGATCTAGGCGCATTCAGTAC
GATATGATTAAAAGTAGTCTATGGACTAGTGGCTGGCCGCTTCTCCAGGA
CCATGTACCAACTTGACTGGCAGCATGAAAATGACATACTGGCAGCATAC
TACAGGGTATTTGGCGAAAATCAAGAAGGCGCACGATAGATGCAGCATCT
ATCTGTGAGCAGTTGTTACGCCTGTGCGAATGCCTCACCTTTATCCGGGC
CGTTTAATACGTTTTGCGCGAGCAACCGGATTTTAGATTTTTCACCGCCT
CCTTTTCCCTTCAGTGTGTCTGGCGAGGGGTGCTACGAGTATCACAAACA
AACAGAAGACAGCTCTGAAAGCGTGAAGTATTTTCCTGGCAAACTTGATT
GATGATGTACTCAATATGGCGCAAGTCTATAATGGCTCGCATGCGATCAT
TCCCGATGCGGATGACGCGTATCATGGGTGACCTTTTTCGAGGCATTGCA
CCTCTATCATATAGCTCTGAGACTGGATGTCTGGTGCAGGCCAAACTCTA
GAATCTAGATTCTTGTTACGGGAAGCACGGTATGTTGTCAACATTGATGA
TTGAAGTTCCGTCAGCTTTGGAACAAAACTTACGGTAGATACCCAGGGGC
TGAGCCTTCTGTGTACATCTGGTCAAAACATTCAGCAGGGGCTCCATCAC
TGATATGATAAAACACAAAGGTAAGTAAAGATGTGAACCACCCAAGCAAC
AGACCTGCACTGCGCCAAACAAAAAAAAACGCGAACCTCACGTGATGCCC
CCCCCCCCCCGTTTTACGAATTCTTCAAATCATGTCACCCCCCCCCATCA
AGAATTTCATAAAATGCACGTCCCACGTCTCTCTCGTTCTTCAGAAAGCA
CACAACCCGCACACATTTTCACACACGCAGGTGAGGAGGAGGCGGACTGG
ATAGAGGCCGTGGTCGAGCGGCTCCGGAAGGCCAAGCAGGAGGCATCCGC
GATAGACGGGGTCAAGGCTGCCAGAGAAAGCACCAAGGCGGCCAGGGCCA
GGCAAGGCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig655:79590..82450+

>mRNA_P-littoralis_Contig655.8.1 ID=mRNA_P-littoralis_Contig655.8.1|Name=mRNA_P-littoralis_Contig655.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig655:79590..82450+ (Pylaiella littoralis U1_48)
ATGATAAAAACTTTATCCAAAACGCACAAGGTGTTTGCCGAGTTCGAGCC
CAACATGCCGCGGGTGGCCGCGAGGGCGAGCGTGAAGCCGACAAAGAAGG
CCCAGTCCGCGTCGGCCATCACAATCAAATCGAAACGCCCAAAGGGCATC
CAGAGGGCAGACCAGCAAACTCCTCAGAGGGAGGACGATGCGTTAGACGC
AGACGCTCTCAAGTGCCCGAATCTGGAGGCGTTTTTGGACGCAGTTACCA
GCCAGCGCGAGAGGACGGGCGCCGTGAAATGGTCGCCCGAGGGTGAGGAG
GAGGCGGACTGGATAGAGGCCGTGGTCGAGCGGCTCCGGAAGGCCAAGCA
GGAGGCATCCGCGATAGACGGGGTCAAGGCTGCCAGAGAAAGCACCAAGG
CGGCCAGGGCCAGGCAAGGCTGG
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