mRNA_P-littoralis_Contig655.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 173 bits (438), Expect = 1.230e-43 Identity = 127/360 (35.28%), Postives = 173/360 (48.06%), Query Frame = 1
Query: 505 GILEQVVLSDADIANTSAVRNCWQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPEAFLSHRANLERIVEDTSCEKYIADLIAEFLPNFSATQQLVFRANVRIVWEA*QMPHISSSQRRRLWALNVFP-VATKGQIQVGVLLAADGCHPRHGXXXARGRFVFGGKKIGG*EEAVTLRSLGSPPRCDPDAGDRAQQVRNPSRYCPKAFPGEPP------AGVFQPHQTRARAHWRQPILPQGTQTRIG--RIAVVELMGAGSADDGGYPLPLAHNFLSETIGGCRGRVNAFEEAPADIDLDQDIKLGPDAPSTKESSAWARASLTAFLALIANVPINLVAAVRYNLT 1557
G +V+L+DAD A TSA+ W TTLHLFCLWHVFKNVLKNC+ + PD ++RA++LRLFRSAAYAATPEAF +R +LE+IV+ CE+Y+ LI Q + WA + P + T G + R +FG K G + ++L L + D SR + E P G+F P Q + + +G + VE++ AG+ DD G P PL L + R ++ FEEA D DL++D GP+A ST++SS WAR SL A L LI +P+++ AAVRY LT
Sbjct: 39 GRRPKVMLTDADRAMTSALEE-WTTTLHLFCLWHVFKNVLKNCSSSFPDKEERAKMLRLFRSAAYAATPEAFARYRVDLEKIVKGKKCEEYMDALI----------------------------------QDKTKWAFSCRPTLLTMGMVAT-----------------QRTEGMFGVAKRSGVHKKLSLCGLWEKLQLMYQKMDVEY-----SRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQVEARAEVGGSQSYDVEVICAGATDDDGRPDPLGEGVLRRKLEAVRFDLSLFEEAKPDTDLEKDCMRGPEAESTEDSSVWARTSLEALLDLIGELPVHVAAAVRYKLT 341
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE) HSP 1 Score: 172 bits (435), Expect = 9.890e-43 Identity = 140/448 (31.25%), Postives = 199/448 (44.42%), Query Frame = 1
Query: 352 SDFLSTLQREPGMFVERTFDSFGRLVNVFWATVDQQDKMGEIQGL------------------------------------HPARHHGILEQVVLSDADIANTSAVRNCWQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPEAFLSHRANLERIVEDTSCEKYIADLIAEFLPNFSATQQLVFRANVRIVWEA*QMPHISSSQRRRLWALNVFP-VATKGQIQVGVLLAADGCHPRHGXXXARGRFVFGGKKIGG*EEAVTLRSLGSPPRCDPDAGDRAQQVRN--PSRYCPKAFPGEPPAGVFQP-HQTRARAHWRQPILPQGTQTRIGRIAV-----VELMGAGSADDGGYPLPLAHNFLSETIGGCRGRVNAFEEAPADIDLDQDIKLGPDAPSTKESSAWARASLTAFLALIANVPINLVAAVRYNLTA 1560
+DFL++L+ EPGM+ + T D+ GRLV+VFW+T++QQ + G + G +V+L+DAD+A T+A+ +CW TLHL CLWH+FKNV KNC+ + PD D + ++LR FR AAYAATPEAF + A L+ +V CE Y+ DLI + WA P V T G + R +FG K G E+ ++L +L DR Q V A P P F+ H +Q +L G ++ VEL+ +G+ D+ G PLPL H+ I R ++N + AP D DL++D D P+ ++++ WA SL AFL L+A PI LVAAVRY +A
Sbjct: 187 TDFLASLKSEPGMYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNSACFCAFWGRDCCGQCTQTFERMLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHCLWHIFKNVRKNCSSSFPDNDAKTDMLRTFRRAAYAATPEAFATQAARLKTLVAGKKCEDYMTDLITN----------------------------------KTKWAFCWRPTVVTLGMVAT-----------------QRTEGLFGVAKRSGVEKKLSLCAL----------WDRLQHVSKMIAIETARLATPLITPGVAFRDKHVEEFFQPVKQELLACGASQYCQKVDGSESYDVELVTSGNVDEDGQPLPL-HDDDFVQIRNLRLKLNILQVAPPDTDLERDSLA--DEPA-EDNTMWACTSLLAFLELVAGFPIELVAAVRYKYSA 569
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE) HSP 1 Score: 169 bits (429), Expect = 2.260e-41 Identity = 158/546 (28.94%), Postives = 232/546 (42.49%), Query Frame = 1
Query: 184 VLPLSVVERRMDDLRRWTPADTKRQRSSNCSGWTTTGRCYVKSANGR----------RVVLQSRAGSDFLSTLQREPGMFVERTFDSFGRLVNVFWATVDQQDKMGE---------------------IQGLHPARHHGILEQ----------------------------VVLSDADIANTSAVRNCWQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPEAFLS-----------------HRANLERIVEDT--SCEKYIAD-----LIAEFLPN--FSATQQL--VFRANVRIVWEA*QMPHISSSQRRRLWALNVFPVATKGQIQVGVLLAADGCHPRHGXXXARGRFVFGGKKIGG*EEAVTLRSLGSPPRCDPDAGDRAQQVRNPSRYCPKAFPGEPPAGVFQPHQTRARAHWRQPILPQGTQTRIGRIAV-VELMGAGSADDGGYPLPLAHNFLSETIGGCRGRVNAFEEAPADIDLDQDIKLGPDAPSTKESSAWARASLTAFLALIANVPINLVAAVRYNLT 1557
LP +VV+ R DD+R+WT A K G C K + + G++FL+ L+ EPGMFV+RTFDS GR+V+VFWATVDQQDKM I G+ +L Q V+L+DAD A +A+R W+T +HL+ LWH+ K+V+K+C+ D R ++LRLFR+AAYAATPE L+ H L + +D C + +D + N ++AT + +RA++ + +S WA + P A + +G++ R +FG K G + ++L +L DR Q V +QT H Q + G + VE++ G+ADD G+P+PL + L + + N EE P D DL+ D KL P+A ST++++ WAR SL A L L + VP++L AAV Y LT
Sbjct: 296 ALPPTVVDERFDDVRKWTTAGVKPTDMFKLLKMHYDGLCLAKDEKKKVYNAIKKIQNELYSTPEDGANFLAKLEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMAATGCMQMDTTVFTDRYGCPLLFIVGVDDENRTCVLGQGVLRSESTETFKWFLDSYEEAAGGRRPKVMLTDADQAMAAALRE-WKTIVHLWYLWHLNKDVVKHCSSFFSDPRTREKMLRLFRNAAYAATPEVMLTDADQAMAAALREWKTIVHLWYLWHLNKDVVKHCSSFFSDPRTREKMLRLFRNAAYAATPEAFAAYRADLERT-----VATSTSGTFSTKWAFSCRPTA----LTLGMVATK------------RTEGMFGVAKKSGIHKKLSLCAL----------WDRLQHV----------------------YQTMDIEHGSQYCQLEAKDELGGSQSYDVEVICVGAADDEGHPVPLEGDVLRQQLEAAHFDFNLCEEGPPDTDLEIDCKLDPEAESTEDNTVWARTSLEALLDLFSRVPVHLAAAVPYKLT 787
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5L3G4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G4_9PHAE) HSP 1 Score: 148 bits (374), Expect = 5.980e-35 Identity = 95/253 (37.55%), Postives = 128/253 (50.59%), Query Frame = 1
Query: 184 VLPLSVVERRMDDLRRWTPADTKRQRSSNCSGWTTTGRCYVKSANGRRVVLQSRAGSDFLSTLQREPGMFVERTFDSFGRLVNVFWATVDQQDKMGEIQG-------LHPARH--------------------HGILE-----------------------QVVLSDADIANTSAVRNCWQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPEAFLSHRANLERIVEDTSCEKYIADLI 792
VLP ++V+ R DD+R+WT A K + G C K D L+ EPGMFV+RTFDS GR+V+VFWATVDQQDKM G + RH G+L +V+L+D D A SA+R W+TT+HL CLWH+ K+V+K+C+ + D R ++LRLFR+AA+AATPE F +RA+LER V C++YI DL+
Sbjct: 305 VLPPTMVDERFDDVRKWTAAGVKPTDTFKLLEMDYDGLCLAK---------------DGKKKLEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMETTVFTNRHGCPLLFIVGVDDENRTCVLGQGMLRSESTESFKWFVDSYEKAAGGRRPKVMLTDTDQAMASALRE-WKTTVHLRCLWHLNKSVVKHCSSSFSDTKTREKMLRLFRNAAHAATPEIFAKYRADLERTVGGKKCDQYIRDLL 541
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE) HSP 1 Score: 149 bits (377), Expect = 9.930e-35 Identity = 90/197 (45.69%), Postives = 109/197 (55.33%), Query Frame = 1
Query: 352 SDFLSTLQREPGMFVERTFDSFGRLVNVFWATVDQQDKMGE----------------------IQGLHPARHHGILEQ----------------------------VVLSDADIANTSAVRNCWQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPEAFLSHRANLERIVEDTSCEKYIADLI 792
++FL+TLQ EPGMFVER FDS GRL NVFWATVDQQ+K+ I G+ IL Q V L+D + A T+A+R W+TTLHL+CLWH+FKNVLKNCA + PDAD+R +L LFRSA Y ATPEAF H A+LER + C KY+ DLI
Sbjct: 35 ANFLATLQSEPGMFVEREFDSIGRLENVFWATVDQQNKIARYGACIQMDTTVFMNRYGCPLLFIVGVDDENRSCILAQCLLRSECTETFKWILTSWDGASGDRRPKVFLTDGEKAMTAALRG-WKTTLHLYCLWHIFKNVLKNCASSFPDADERKGMLGLFRSATY-ATPEAFNKHSADLERTIAGKECAKYMQDLI 229
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE) HSP 1 Score: 145 bits (365), Expect = 5.720e-34 Identity = 67/114 (58.77%), Postives = 89/114 (78.07%), Query Frame = 2
Query: 944 DKSKWAFSLRPTVVTLGMVATQRVDGLFSVAKKSGVEKKLSLCALWDRLQGVIQMLEIEHSRLGTPAVTAPKLFQENHLQAFFNPIKQELERIGASQYCHRELRPELGGSQSWN 1285
+K+KWAF RPTV+TLGMVATQR +GLF VAK+SGVEKKLSLCALWDRLQ + +M+ IE +RL TP +T F++ ++ FF P+KQEL GASQYC +E+R ++ G +S++
Sbjct: 128 NKTKWAFCCRPTVLTLGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLATPPITPGVAFRDKLVEEFFQPVKQELLACGASQYCQKEIRAQVDGLESYD 241
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.930e-33 Identity = 108/331 (32.63%), Postives = 160/331 (48.34%), Query Frame = 1
Query: 571 WQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPEAFLSHRANLERIVEDTSCEKYIADLIAEFLPNFSATQQLVFRANVRIVWEA*QMPHISSSQRRRLWALNVFPVATKGQIQVGVLLAADGCHPRHGXXXARGRFVFGGKKIGG*EEAVTLRSLGSPPRCDPDAGDRAQQVRNPSRYCPKAFPGEPPAGVFQPHQTRARAHWRQPILPQGTQTRIG--RIAVVELMGAGSADDGGYPLPLAHNFLSETIGGCRGRVNAFEEAPADIDLDQDIKLGPDAPSTKESSAWARASLTAFLALIANVPINLVAAVRYNLT 1557
W+TT+HL+CLWH+ KNV+++C+ + D R ++LRLFR+AA+AATPEAF ++RA+LER V C++YI DL+ A + L+ + W P + QR R WA C PR R G +K G T L + + R + AF + G P + + + +G + VE++ G+ADD G+P+PL L + + N +EEAP D D++ D KLGP+A ST++++ WAR SL A L L++ VP++L AAVRY LT
Sbjct: 8 WKTTVHLWCLWHLNKNVVQHCSSSFSDTKTREKMLRLFRNAAHAATPEAFSTYRADLERTVRGKKCDQYIRDLLD------GARKMLI--SCWCCEWRKRSGPSPAGRQRSR-WA----------------------CLPRSAP-----RACSGWRKSSG----YTRSCLCALCETASNMCTRQWTLSTAVVKAELAFQTKHLEGFLAPIREELESVGASQYCQLEAKDELGGSQSYDVEVICVGAADDKGHPVPLEGGVLRQQLEAAHFDFNLYEEAPPDTDMEIDCKLGPEAESTEDNTVWARTSLEAPLDLVSRVPVHLAAAVRYKLT 298
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 144 bits (363), Expect = 6.720e-33 Identity = 110/312 (35.26%), Postives = 143/312 (45.83%), Query Frame = 1
Query: 40 EIVCKRRGKPR-KDAPGSTDKKLRKSSSKQSNCD----------------------HNHDPRGAVSSVEQDVLPLSVVERRMDDLRRWTPADTKRQRSSNCSGWTTTGRCYVKSANGRRVVLQSRA------------GSDFLSTLQREPGMFVERTFDSFGRLVNVFWATVDQQDKMGEIQGLHP------ARHHG----------------ILEQ------------------------------VVLSDADIANTSAVRNCWQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPE 714
EI+CK G PR K+ + KK R+ S++ C HNHDPRGAVS ++ VLPLS ++ RMDD+R+WT A+ Q R + G++ V A ++FL+TL+ +PGM+V TFD GRLVNVFWAT DQQ++ G A +G IL Q V+L+DAD+A TSAV + W+ T HLFCLWHV KN++K CA A D D R +LR FRSAAYA E
Sbjct: 128 EILCKHNGSPRFKEYVPTAGKKNRERRSQRVGCPFKVGIYWRSGTLTPAVTQADLRHNHDPRGAVSKAQEKVLPLSFIDDRMDDIRKWTAANLGAQEIFKLLHADGENRLLCR--QGKKKVWNFMAKVQEELYCSPEDAANFLATLRSDPGMYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKVILTDADVAMTSAVPSVWKGTQHLFCLWHVNKNLVKKCAGALSDHD-RTRMLRSFRSAAYAVNAE 436
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5KK72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK72_9PHAE) HSP 1 Score: 130 bits (328), Expect = 4.890e-32 Identity = 73/133 (54.89%), Postives = 89/133 (66.92%), Query Frame = 1
Query: 352 SDFLSTLQREPGMFVERTFDSFGRLVNVFWATVDQQDKMGEIQG--------LHPARHHGIL----EQVVLSDADIANTSAVRNCWQTTLHLFCLWHVFKNVLKNCAKACPDADQRAEILRLFRSAAYAATPE 714
++FL+TLQ EPGMFVER DS GRL NVFWATVDQQ+K+ +R G +V L+D D A T+A+R W+TTLHL+CLWH+ KNV KNCA + PDAD+R +L LFRS AYAATPE
Sbjct: 35 ANFLATLQSEPGMFVERELDSIGRLENVFWATVDQQNKIARYGACIQMGTMVFTNSRXDGASGDRRPKVFLTDGDKAMTAALRG-WKTTLHLYCLWHILKNV-KNCASSFPDADERKRMLGLFRSVAYAATPE 165
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Match: A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.420e-31 Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 2
Query: 941 RDKSKWAFSLRPTVVTLGMVATQRVDGLFSVAKKSGVEKKLSLCALWDRLQGVIQMLEIEHSRLGTPAVTAPKLFQENHLQAFFNPIKQELERIGASQYCHRELRPELGGSQSWN 1285
++KSKWAF R T + LGM ATQRV+GLFSVAK+ GV K+LSLCALWD L+ V L IE L TPA+ A FQE H++ FF PIK+ L+R+GASQ+C R++R ELGGSQS++
Sbjct: 19 KNKSKWAFYCRTTTLALGMAATQRVEGLFSVAKRMGVIKQLSLCALWDVLRRVDTSLAIE---LATPAIAAQLPFQEKHMENFFTPIKEGLQRVGASQFCTRDVRRELGGSQSYD 130 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig655.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig655.1.1 >prot_P-littoralis_Contig655.1.1 ID=prot_P-littoralis_Contig655.1.1|Name=mRNA_P-littoralis_Contig655.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp RHRRVKTRRYRHREIVCKRRGKPRKDAPGSTDKKLRKSSSKQSNCDHNHDback to top mRNA from alignment at P-littoralis_Contig655:13355..17232+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig655.1.1 ID=mRNA_P-littoralis_Contig655.1.1|Name=mRNA_P-littoralis_Contig655.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3878bp|location=Sequence derived from alignment at P-littoralis_Contig655:13355..17232+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig655:13355..17232+ >mRNA_P-littoralis_Contig655.1.1 ID=mRNA_P-littoralis_Contig655.1.1|Name=mRNA_P-littoralis_Contig655.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig655:13355..17232+ (Pylaiella littoralis U1_48)back to top |