prot_P-littoralis_Contig654.11.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig654.11.3
Unique Name	prot_P-littoralis_Contig654.11.3
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	921

Homology

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 464 bits (1195), Expect = 4.610e-148
Identity = 414/646 (64.09%), Postives = 451/646 (69.81%), Query Frame = 0

Query:   96 ASRLPEVSPKTSSLFGANRGPV-GGSGRGGSLPGVPDAFSQKSPPGRQKRADWECSKCFMNNFARRDHCFGCGAAAEGGFNSAIPTNVLRVSGLRRSTTAEQVVSALKAFAPVKDAHLAVQPATNASLRACYVEFQSVEHARHTLETAAQSAEETGDHRDNSKNGDGGDYYSGLMIEGEPASLSYAAAGAPPASXXXXXXXXXXXXXXXXXXXXXEGRILAPVSASALTALKAFQGRQNAARLAKLEGAASATAARESLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPEGGYGDXXXXXXGGAMAVVTLGGLAGSEGASPEVICAALQKKLNPPDWPPPFEESGAAYIFDGPSGYFYESTXXXXYDPRSKLYCKDMTWHSHTPGQNPAFTPVTQPQQQQGTDQQYPLVSDAAGGTAIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG--WKKSS-RLAFGFKSGAKLAKAGIGGGXXXXXXXXXXADSESSGDXXXXXXXXXXXXXXXXXXXXXXXXXXGSLAKKRQLQDVSKWNARKLEALEGDAKSSVNTNNGVAVAAQPLHIAPRRXXXXXXXXXXPPQAVPSYDPPAPLLPPVLPDET 737
            A+R  +  P+T S    +R    GGS RG       DA S+ +P  R KRADWECSKC   NFARRD CFGCGAA   G+ + IPTNVLRVSGLRRSTT+EQVV ALK FAPVKDAHLAV P TNASLRAC+VEFQSVEHA+HTL+TA             S  GDGG     L IEGEPASLSYAA+GA P  XXXXXXXXXXXXXXXXXXX    RI+APVSAS++TALKAFQGRQNAARLAKLEG  +AT       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       GD XXXXX  AMAVVTLGG AGSEGASPE +CAALQKKLNPPDWPPPFEE+GAAY+FDGPSGYFYEST    YDPRSKLYCK M W+SHTPGQ+PAF PV+Q   Q GTD +  L + A+ G ++G     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    WKKSS RLAFGFK GAKLAKA  GGG          ADS+SSGD                          G+LAKKRQL+DVSKWNARKLEA +G+   +   +NG   AAQPLHIAPRR           PQA  SYDPPAPLLPP+LP+ T
Sbjct:   30 AARTGDRGPRTGSRSSGDRYTAPGGSDRGFF---AEDARSELNPASR-KRADWECSKCSTLNFARRDRCFGCGAAMGKGYRTTIPTNVLRVSGLRRSTTSEQVVLALKPFAPVKDAHLAVHPTTNASLRACHVEFQSVEHAQHTLDTA-------------SVEGDGG-----LTIEGEPASLSYAASGAAPXXXXXXXXXXXXXXXXXXXXX----RIVAPVSASSVTALKAFQGRQNAARLAKLEGGEAATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVG---------------------GDAXXXXXXXAMAVVTLGGAAGSEGASPEAVCAALQKKLNPPDWPPPFEEAGAAYLFDGPSGYFYESTTGVYYDPRSKLYCKGMVWYSHTPGQDPAFNPVSQ---QGGTDARSSLANGASEGVSVGDATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSSSRLAFGFK-GAKLAKAAAGGGGVGASGVLGGADSDSSGDDSGGEVAAGVGRGTVGGGVGVG----GALAKKRQLEDVSKWNARKLEAQQGEGGGA---SNGTKAAAQPLHIAPRRQQQPSA-----PQATISYDPPAPLLPPLLPEVT 612

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A293L9Z8_ORNER (RNA-binding protein (Fragment) n=5 Tax=Ornithodoros TaxID=6937 RepID=A0A293L9Z8_ORNER)

HSP 1 Score: 73.6 bits (179), Expect = 1.230e-9
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 0

Query:  135 QKSPPGRQKRADWECSKCFMNNFARRDHCFGCGAAAEG--------GFN--SAIPTNVLRVSGLRRSTTAEQVVSAL--KAFAPVKDAHLAVQPATNASLRACYVEFQSVEHA 235
            ++  PG   R DW C+KC +NNF RRD+CF CGA  E         G++  S +PTN+L +  L   TT E+V++ L      P+K   +A  P T  S   CYVE  +V  A
Sbjct:   61 ERGGPGGLARTDWNCAKCGVNNFRRRDNCFKCGAPREEAEIPISGEGYDEVSTMPTNILLLRNLDVLTTEERVLAVLGQTTSVPIKSLKVARDPGTGVSRGFCYVELHTVAEA 173

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: V5HZG7_IXORI (Putative rna-binding protein 5 (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=V5HZG7_IXORI)

HSP 1 Score: 72.0 bits (175), Expect = 3.510e-9
Identity = 44/104 (42.31%), Postives = 56/104 (53.85%), Query Frame = 0

Query:  144 RADWECSKCFMNNFARRDHCFGCGAAAEG--------GFN--SAIPTNVLRVSGLRRSTTAEQVVSAL--KAFAPVKDAHLAVQPATNASLRACYVEFQSVEHA 235
            R DW C KC +NNF RRD+CF C AA E         GF+  S++PTN L +  L   TT E+V++ L      P+K   +A  PAT  S   CYVE  +V  A
Sbjct:  229 RTDWNCGKCGVNNFRRRDNCFKCSAAREDAEIPNSGDGFDEISSVPTNTLLLRNLDVLTTEERVLAVLGQTTNVPIKSLKVARDPATGTSRGFCYVELHTVAEA 332

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A131XRS6_IXORI (Putative rna-binding protein 5-a (Fragment) n=4 Tax=Ixodes TaxID=6944 RepID=A0A131XRS6_IXORI)

HSP 1 Score: 72.0 bits (175), Expect = 4.260e-9
Identity = 44/104 (42.31%), Postives = 56/104 (53.85%), Query Frame = 0

Query:  144 RADWECSKCFMNNFARRDHCFGCGAAAEG--------GFN--SAIPTNVLRVSGLRRSTTAEQVVSAL--KAFAPVKDAHLAVQPATNASLRACYVEFQSVEHA 235
            R DW C KC +NNF RRD+CF C AA E         GF+  S++PTN L +  L   TT E+V++ L      P+K   +A  PAT  S   CYVE  +V  A
Sbjct:  229 RTDWNCGKCGVNNFRRRDNCFKCSAAREDAEIPNSGDGFDEISSVPTNTLLLRNLDVLTTEERVLAVLGQTTNVPIKSLKVARDPATGTSRGFCYVELHTVAEA 332

[Close]

BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A1E1XRW1_9ACAR (Putative rna-binding protein (Fragment) n=2 Tax=Amblyomma TaxID=6942 RepID=A0A1E1XRW1_9ACAR)

HSP 1 Score: 70.1 bits (170), Expect = 1.670e-8
Identity = 43/104 (41.35%), Postives = 55/104 (52.88%), Query Frame = 0

Query:  144 RADWECSKCFMNNFARRDHCFGCGAAAE--------GGFN--SAIPTNVLRVSGLRRSTTAEQVVSAL--KAFAPVKDAHLAVQPATNASLRACYVEFQSVEHA 235
            R DW CSKC +NNF RRD CF C A  E         G++  S++PTN L +  L   TT E+V++ L      P+K   +A  PAT  S   CYVE  +V  A
Sbjct:  228 RTDWNCSKCGVNNFRRRDSCFKCSATREEAESPSTGDGYDEISSVPTNTLLLRNLDVLTTEERVLAVLGQTTNVPIKSLKVARDPATGVSRGFCYVELHTVAEA 331

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A131XDD1_9ACAR (Putative rna-binding protein 10-like isoform 1 (Fragment) n=9 Tax=Ixodidae TaxID=6939 RepID=A0A131XDD1_9ACAR)

HSP 1 Score: 68.2 bits (165), Expect = 6.710e-8
Identity = 43/117 (36.75%), Postives = 57/117 (48.72%), Query Frame = 0

Query:  131 DAFSQKSPPGRQKRADWECSKCFMNNFARRDHCFGCGAAAE--------GGFN--SAIPTNVLRVSGLRRSTTAEQVVSAL--KAFAPVKDAHLAVQPATNASLRACYVEFQSVEHA 235
            + F      G   R DW CSKC +NNF RRD CF C A+ E         G++  S++PTN L +  L   TT E+V++ L      P+K   +A    T  S   CYVE  +V  A
Sbjct:  284 EGFGGSDRGGMMARTDWNCSKCGVNNFRRRDSCFKCSASREEAEASGTGDGYDEISSVPTNTLLLRNLDVLTTEERVLAVLGQTTNVPIKSLKVARDAVTGVSRGFCYVELHTVAEA 400

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A131ZBA0_RHIAP (RNA-binding protein 5/10 (Fragment) n=1 Tax=Rhipicephalus appendiculatus TaxID=34631 RepID=A0A131ZBA0_RHIAP)

HSP 1 Score: 67.0 bits (162), Expect = 1.370e-7
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 0

Query:  140 GRQKRADWECSKCFMNNFARRDHCFGCGAAAE--------GGFN--SAIPTNVLRVSGLRRSTTAEQVVSAL--KAFAPVKDAHLAVQPATNASLRACYVEFQSVEHA 235
            G   R DW CSKC +NNF RRD CF C A+ E         G++  S++PTN L +  L   TT E+V++ L      P+K   +A    T  S   CYVE  +V  A
Sbjct:  223 GMMARTDWNCSKCGVNNFRRRDSCFKCSASREEAEASGTGDGYDEISSVPTNTLLLRNLDVLTTEERVLAVLGQTTNVPIKSLKVARDAVTGVSRGFCYVELHTVAEA 330

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A6P5ACB8_BRABE (RNA-binding protein 10-like isoform X4 n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5ACB8_BRABE)

HSP 1 Score: 65.9 bits (159), Expect = 3.270e-7
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 0

Query:  137 SPPGRQKRADWECSKCFMNNFARRDHCFGCGAAAEG---------GFNS--AIPTNVLRVSGLRRSTTAEQVVSALKAFAPVK--DAHLAVQPATNASLRACYVEFQSVEHARHTLE 240
            S P  QK  DW+CSKC ++NF RRDHCF CG + E          G+N   + P+N L   GL   TT E + S L A + V      L     T+ S   C+VE  ++E A   ++
Sbjct:   12 STPKPQKEEDWQCSKCGVHNFKRRDHCFKCGISREESSKTLKEGEGYNEVGSQPSNTLIFRGLDTLTTEETIRSTLGALSTVHIHSIRLIKDKLTHTSRGFCFVEMNTLEEAAQMMD 128

[Close]

BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A6P5ACA0_BRABE (RNA-binding protein 10-like isoform X1 n=13 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5ACA0_BRABE)

HSP 1 Score: 65.9 bits (159), Expect = 3.390e-7
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 0

Query:  137 SPPGRQKRADWECSKCFMNNFARRDHCFGCGAAAEG---------GFNS--AIPTNVLRVSGLRRSTTAEQVVSALKAFAPVK--DAHLAVQPATNASLRACYVEFQSVEHARHTLE 240
            S P  QK  DW+CSKC ++NF RRDHCF CG + E          G+N   + P+N L   GL   TT E + S L A + V      L     T+ S   C+VE  ++E A   ++
Sbjct:   76 STPKPQKEEDWQCSKCGVHNFKRRDHCFKCGISREESSKTLKEGEGYNEVGSQPSNTLIFRGLDTLTTEETIRSTLGALSTVHIHSIRLIKDKLTHTSRGFCFVEMNTLEEAAQMMD 192

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BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Match: A0A4Y2CVF3_ARAVE (RNA-binding protein 5 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2CVF3_ARAVE)

HSP 1 Score: 64.3 bits (155), Expect = 9.510e-7
Identity = 47/149 (31.54%), Postives = 65/149 (43.62%), Query Frame = 0

Query:  144 RADWECSKCFMNNFARRDHCFGCGAAAEGGFN----------SAIPTNVLRVSGLRRSTTAEQVVSALKAFA--PVKDAHLAVQPATNASLRACYVEFQSVEHARHTLETAAQSAEETGDHRDNSKNGDGGDYYSGLMIEGEPASLSYA 280
            +ADW+C KC MNNF RRD+CF CG+A E  F           S+ P+N L    L   TT  +V++ L      P+K   +A    TN S    +VE  S   A    E                    GG++Y    ++G   ++SYA
Sbjct:  260 KADWDCPKCGMNNFKRRDYCFKCGSAREDTFEWQHGDCYNEISSTPSNTLLFGNLDVLTTEGRVLAMLGQLTTLPIKSLRVAKDSLTNTSRGYAFVELNSTSEAIQLYELLLSM---------------GGNFY----VDGRQVTVSYA 389

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot

BLAST of mRNA_P-littoralis_Contig654.11.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
D7G7L5_ECTSI	4.610e-148	64.09	RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto...	[more]
A0A293L9Z8_ORNER	1.230e-9	38.94	RNA-binding protein (Fragment) n=5 Tax=Ornithodoro...	[more]
V5HZG7_IXORI	3.510e-9	42.31	Putative rna-binding protein 5 (Fragment) n=1 Tax=...	[more]
A0A131XRS6_IXORI	4.260e-9	42.31	Putative rna-binding protein 5-a (Fragment) n=4 Ta...	[more]
A0A1E1XRW1_9ACAR	1.670e-8	41.35	Putative rna-binding protein (Fragment) n=2 Tax=Am...	[more]
A0A131XDD1_9ACAR	6.710e-8	36.75	Putative rna-binding protein 10-like isoform 1 (Fr...	[more]
A0A131ZBA0_RHIAP	1.370e-7	38.89	RNA-binding protein 5/10 (Fragment) n=1 Tax=Rhipic...	[more]
A0A6P5ACB8_BRABE	3.270e-7	36.75	RNA-binding protein 10-like isoform X4 n=2 Tax=Bra...	[more]
A0A6P5ACA0_BRABE	3.390e-7	36.75	RNA-binding protein 10-like isoform X1 n=13 Tax=Br...	[more]
A0A4Y2CVF3_ARAVE	9.510e-7	31.54	RNA-binding protein 5 n=1 Tax=Araneus ventricosus ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 145..169 e-value: 9.4E-6 score: 35.1
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 147..166
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 143..172 score: 9.529128
IPR041591	OCRE domain	PFAM	PF17780	OCRE	coord: 477..506 e-value: 3.3E-8 score: 33.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 174..284 e-value: 5.0E-8 score: 34.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 183..240 e-value: 2.1E-5 score: 24.2
None	No IPR available	GENE3D	4.10.1060.10		coord: 137..172 e-value: 1.8E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 515..534
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 688..792
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 701..717
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 718..734
None	No IPR available	PANTHER	PTHR13948	RNA-BINDING PROTEIN	coord: 140..861
None	No IPR available	PANTHER	PTHR13948:SF3	FI21118P1	coord: 140..861
None	No IPR available	CDD	cd16074	OCRE	coord: 471..523 e-value: 1.2915E-12 score: 61.1463
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 824..854 score: 9.161507
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 178..240
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 138..169

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig654	contig	P-littoralis_Contig654:21812..31093 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig654.11.3	mRNA_P-littoralis_Contig654.11.3	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig654 20875..31232 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig654.11.3 ID=prot_P-littoralis_Contig654.11.3|Name=mRNA_P-littoralis_Contig654.11.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=921bp
MERTDRYRDRSRGRDRRDSGGDRSSHDASSSRRGENGVPAYGSAYSREDR
RSGSSGSKRRRDSNDRDTGRRNRRSRSRSRERRGGGGGGGGGQRDASRLP
EVSPKTSSLFGANRGPVGGSGRGGSLPGVPDAFSQKSPPGRQKRADWECS
KCFMNNFARRDHCFGCGAAAEGGFNSAIPTNVLRVSGLRRSTTAEQVVSA
LKAFAPVKDAHLAVQPATNASLRACYVEFQSVEHARHTLETAAQSAEETG
DHRDNSKNGDGGDYYSGLMIEGEPASLSYAAAGAPPASAAPAIAAAAAAA
EADGDGEEEEGRILAPVSASALTALKAFQGRQNAARLAKLEGAASATAAR
ESLSSSSSSSLSSSTARSKAAAAAAAAAARARRARVDTGSGAGTGSLALA
FGPGNKGGGGGDGGGGAAPEGGYGDAGGIGSGGAMAVVTLGGLAGSEGAS
PEVICAALQKKLNPPDWPPPFEESGAAYIFDGPSGYFYESTTGVYYDPRS
KLYCKDMTWHSHTPGQNPAFTPVTQPQQQQGTDQQYPLVSDAAGGTAIGA
AAGAATSAAVGGETGATASAPAATASGLKRATVGGWKKSSRLAFGFKSGA
KLAKAGIGGGGLGASGVLGGADSESSGDENGGDGAGAAAAGTKGAAGVGG
VGVGGSLAKKRQLQDVSKWNARKLEALEGDAKSSVNTNNGVAVAAQPLHI
APRRQQQQQQQQQHPPQAVPSYDPPAPLLPPVLPDETLAPRATPEEARSR
GRKAGGGGNPGSGERGGGGNSRSPGERGGGKRERGVSVATPVGSGAGGGV
GASSSVPTAAAAAAAVGGAAAVVVACLLCRRSFGSSEMLRKHERKSKLHK
DNLAAAAAAARGGDGGGGGIFYFYFVGKRCRVCAFRFLCFFSAKTLQGYG
SRLRPPLTRIDLDQIIMPQQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2
IPR041591	OCRE
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR013087	Znf_C2H2_type
IPR035979	RBD_domain_sf
IPR036443	Znf_RanBP2_sf