mRNA_P-littoralis_Contig1169.17.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1169.17.3
Unique NamemRNA_P-littoralis_Contig1169.17.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1169.17.3 vs. uniprot
Match: A0A6H5KXG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.590e-29
Identity = 83/269 (30.86%), Postives = 135/269 (50.19%), Query Frame = 2 
Query: 1412 VEENIKALVQQSPPSLQLVHLQKFGWFVTECVPFWHVCIAEALADLQARKYDIISRKTGSHDFAKRWDEKRKISYVVRDDVLYQLITEPVKRMMRGLGLLDVVGKKGVERIVGDCAALKSLKRNVEVLQGMHTDTPPHADWGDDVAFSTITAGSKPAALEIYPMS*DGGRGLSKVP-------------------VRVIIPPGNTIVFHGVARHRGVSYFTDVLRFFISFVVQAATERAEE-----TTSVVETWLRPEGGAISFDDWKE 2146
            +++N +   + SP   ++ HL ++ +FV + V  W+VC+ E L+ +  R++ ++ +K    +    +D+ RK+S ++ DD+L+ LI  P+K++M      + +G +G                      G   D     DWG+DV FS I  G K  A+++YP S DG  G  K+P                   VR+ + PG  + F GV RHRGVSY    LRFF+S+VV+ A  +AE+     +T+ +E    PE  AI F+ WK+
Sbjct:  124 LKQNAERAGKSSP---EMEHLAQYSFFVKKAVDPWYVCVLEKLSLMPQREFKLLFKKALEDEEDPSYDDYRKMSVILEDDILHGLICGPMKKVM------EEIGSEG----------------------GREVDMNNLYDWGEDVGFSLIPVGPKGGAVDLYPESFDGWEGSKKIPSWYIQKPWGIFKWLWKPYPVRITLEPGEMVCFTGVTRHRGVSYPFQCLRFFMSWVVKDAAVKAEKEGEGASTNNLELEGFPETRAIPFEQWKQ 361
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1169.17.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXG7_9PHAE1.590e-2930.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1169contigP-littoralis_Contig1169:49836..53983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2685
Hectar predicted targeting categoryother localisation
Exons4
Cds size1806
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1169.17.3prot_P-littoralis_Contig1169.17.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1169 49939..53207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.847941-UTR-P-littoralis_Contig1169:49835..499381680789485.847941-UTR-P-littoralis_Contig1169:49835..49938Pylaiella littoralis U1_48UTRP-littoralis_Contig1169 49836..49938 +
1680789485.9051578-UTR-P-littoralis_Contig1169:53207..539831680789485.9051578-UTR-P-littoralis_Contig1169:53207..53983Pylaiella littoralis U1_48UTRP-littoralis_Contig1169 53208..53983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.8586094-CDS-P-littoralis_Contig1169:49938..499861680789485.8586094-CDS-P-littoralis_Contig1169:49938..49986Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 49939..49986 +
1680789485.8692298-CDS-P-littoralis_Contig1169:50854..509771680789485.8692298-CDS-P-littoralis_Contig1169:50854..50977Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 50855..50977 +
1680789485.8802307-CDS-P-littoralis_Contig1169:51410..515331680789485.8802307-CDS-P-littoralis_Contig1169:51410..51533Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 51411..51533 +
1680789485.8943233-CDS-P-littoralis_Contig1169:51695..532071680789485.8943233-CDS-P-littoralis_Contig1169:51695..53207Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 51696..53207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1169.17.3

>prot_P-littoralis_Contig1169.17.3 ID=prot_P-littoralis_Contig1169.17.3|Name=mRNA_P-littoralis_Contig1169.17.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=602bp
MWRHDKRKALASDTEKQRRGGAKYSRGTQPHGESKAERRFRSHCNHRRPI
SSISVLQIPDAITETEIRVGESPPRIKTIGNRNKRKAVHSEVKERGIQMP
LAHHLRLFSRVELVMDFVKATPERERMEDLHKAGQQEMMYTIEQGINSRS
LVSEEACMTLTLLFLFSLGRGWSKQKLVEYWQKNIMLAVCTGAGLFVHEV
FDKDDELAAQALEWMMQFDTDQDFKPTRCFMQVRHVNHPSASGRGVEEDK
EGRGEEECSPRKAERRLVTRRIGCHPFCAESLSGLVAQLDGFTTLEDVLE
HVVAFDTRMPSSIAPPLPLEFDSDVLVRCLDILRIRSEMTRYRKELFNLR
KNVDILPENDDDEREVQDMGWEVSSSGFLFTCCELPIDFLKPCPTNRAFL
RPCPTNHDFLKPCPTNRDFLFPCGVRIFHKAISGSWVEENIKALVQQSPP
SLQLVHLQKFGWFVTECVPFWHVCIAEALADLQARKYDIISRKTGSHDFA
KRWDEKRKISYVVRDDVLYQLITEPVKRMMRGLGLLDVVGKKGVERIVGD
CAALKSLKRNVEVLQGMHTDTPPHADWGDDVAFSTITAGSKPAALEIYPM
S*
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mRNA from alignment at P-littoralis_Contig1169:49836..53983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1169.17.3 ID=mRNA_P-littoralis_Contig1169.17.3|Name=mRNA_P-littoralis_Contig1169.17.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4148bp|location=Sequence derived from alignment at P-littoralis_Contig1169:49836..53983+ (Pylaiella littoralis U1_48)
CCACACCCAGCCGTTGTCCCCCCACCCCCCCCCATGCTGTCGTATCGCTT
TAATCTATTTTCTGCTGAGCGAGGCGCTTGTTCGTACGGGAAGCAGCAGT
TGGATGTGGAGACACGACAAGCGTAAAGCGCTGGCGTCAGATACAGAGAA
GGTAATGCTTCAGAACGTCAGTTTATCACTTCCACCAAAACCCCGCACCT
CTGGAGCTTTCACACGTTCTAGAAGGAATACTCCGAGGTGGAAGAATGTA
GTTTGTTACTCCAAATAGTTTTTTTATCTGACTATTTGCTCACTGTAACT
TTATAGTTTTCGTGTTTTCTAGAGTTGATAAAAGTGGTCGAAAACCTTGC
GTTTACTGCTGTCAAGTAGCTAGCGAGAGATAGCTCTCCGATGCTTTGCG
CAGCGGGTTCGCTCTGCGCGGTGATCCCAGACCACACACCGGGCCCTCCA
CTGGGATGATGTTCTGCTGATGTTGTGGAATAAGTTTGCTACCATGGAAA
AAATCGTTTCCCTGTACACTACTGCCGTAACGTCTTCTGCCCCGCTGTGT
GTCATTGCGGTCAAGTTAATCTCACAACTAACTCGAATGGTAGAAAATTC
GTTAAGTGTGACAAACACACTCGACTCCGGTGACGGAGTTCATTTTTGCT
ACTTACCCGTCTGACGTTTATATTCAGCGAAACATACAAGAAGACCGCAT
TAATTCGAACCGAAGCTCAAATTACTCTCACGACCACACCAGGGTCTTTC
ATTTAACTGAGACGAGGACCCAGAAGGCACGTCTTTTTTTGGCACGTCTG
AACTAGTCATGATTGGAATCCAAACCAGTGACCTTTCGGCTTGCTCCGTG
ATTGGTGTTTCAATTCTAAGCATCCAAACGAAACAATTCCAGGACTTTTG
ACAACCATGAACAACACCCCCAATGCCACCGAGAAAAGCTGGAACAAGCG
GTTGTCTAAAGAATCCTCAACCTTGATTGTAACAAATAACCAGTTTGGCT
GGAACGATCCATTGCCCAGCAACGAAGAGGTGGAGCGAAATACAGCCGGG
GCACGCAACCGCACGGCGAGTCGAAGGCAGAGCGCAGATTCCGGTCGCAC
TGCAACCATAGGAGGCCGATCTCCTCAATAAGTGTCCTCCAGGTGTGTTT
CGGGTGTTCTGTACGGCGTTGCTTTTGTTTATGGCTAAATCGACAGTTAC
TTCGTCTGCTTCGCGCCACTGCTTGTTGTGCTGCTGTGTTCACCTGTGCC
ACAGCATTACTCACGATGTATCGTTCATCTAGCACACACATTGATGTTGC
TGCTGCATTGCCGCATCAGCTCGACCCCATGGATCGGACAAAAATACTGT
ACGCAGCGTGGATAGCCCGACCGTCCAAATAATTTTCGCGGAGTTTTTAT
CTGGAATAATTTGCTCGTTCTACAAAACCTTTAAGCTGGAAATGTGAGGC
ATGGGGGCGAAAACACCAGGGCTATTTCCTGCCACATGTATGTGTGTGCG
AGCGGGATAGATCCAGCACCCCCCTCCCCCCCCCCGATCGAATATTTTTA
CGCTGTGTCGTGTTTGTTAAAACAGATACCAGACGCCATTACGGAGACGG
AGATCCGGGTGGGCGAATCACCACCTCGCATTAAGACAATCGGAAACAGA
AACAAGCGGAAAGCTGTCCACAGCGAAGTGAAGGAGCGAGGAATCCAGGT
CAGTACAGTGTATGCGACACGGCGTTAGACATGATCGCGTTCAAAATTAC
CATGCTAATTGTATTTTATTTTTCCTTGTCCCGCATACAGATCCTTTTTT
TACCGTTCTGATACCGTTCTGTAATGTATCTGTCGTGTTGCTCACTATCT
GTTACTACAGATGCCTCTTGCCCACCACTTGCGACTTTTCTCGCGGGTAG
AATTGGTGATGGACTTCGTCAAAGCGACTCCCGAAAGGGAACGCATGGAG
GATTTGCACAAAGCAGGGCAGCAAGAGATGATGTACACCATCGAGCAGGG
TATCAATTCTCGCTCTCTCGTCTCAGAAGAGGCATGTATGACGCTGACGC
TACTGTTTCTGTTTTCTTTGGGTCGGGGGTGGTCAAAGCAAAAGCTTGTA
GAGTACTGGCaaAAAAACATTATGCTTGCTGTCTGTACGGGTGCTGGGCT
GTTTGTCCACGAGGTTTTTGACAAGGACGATGAACTCGCTGCGCAAGCCT
TAGAGTGGATGATGCAGTTTGACACGGACCAAGATTTCAAACCAACACGT
TGCTTCATGCAAGTAAGGCATGTGAACCACCCAAGTGCTAGTGGTCGAGG
TGTAGAGGAGGACAAAGAGGGACGCGGGGAAGAAGAGTGTAGTCCCAGGA
AAGCTGAACGTAGACTCGTCACCCGCCGCATTGGTTGCCACCCTTTCTGC
GCAGAATCGTTAAGCGGTCTTGTAGCACAGCTGGATGGATTCACTACACT
TGAGGACGTGCTCGAACATGTGGTTGCTTTTGACACACGAATGCCTAGCT
CGATCGCACCTCCTCTACCTTTGGAGTTCGACTCAGATGTATTGGTCAGA
TGTTTAGACATACTCCGTATTAGGAGTGAAATGACCCGATACCGAAAGGA
GTTGTTCAACCTTCGCAAGAACGTTGACATCCTACCTGAGAACGACGACG
ACGAGAGGGAAGTACAGGACATGGGCTGGGAGGTGAGTTCGAGTGGCTTT
CTTTTTACTTGCTGCGAGCTACCGATTGATTTTCTCAAGCCTTGTCCAAC
GAACCGTGCTTTTCTCAGGCCTTGTCCAACGAACCATGATTTTCTCAAAC
CTTGTCCAACGAACCGTGATTTTTTGTTCCCGTGCGGTGTGCGAATTTTT
CACAAGGCGATTTCGGGGTCATGGGTCGAGGAAAACATCAAGGCTCTCGT
GCAGCAGTCGCCACCATCCTTGCAGTTGGTACACCTGCAAAAGTTTGGGT
GGTTCGTCACAGAGTGTGTTCCATTCTGGCATGTATGCATAGCTGAGGCC
CTCGCAGACTTACAAGCCAGAAAGTACGACATAATTTCCCGCAAAACAGG
GTCACATGATTTCGCCAAGAGATGGGACGAGAAAAGGAAAATTAGCTACG
TTGTTCGTGATGATGTGCTCTACCAGCTGATTACCGAGCCCGTGAAGAGA
ATGATGAGGGGTTTGGGACTCCTCGATGTTGTCGGTAAAAAGGGCGTGGA
GCGCATAGTTGGTGACTGTGCCGCGCTCAAGTCTTTGAAGAGGAATGTAG
AGGTTTTGCAGGGGATGCATACAGATACGCCACCGCATGCCGATTGGGGT
GATGATGTGGCGTTCTCAACGATCACCGCGGGATCAAAACCGGCCGCCTT
GGAGATTTACCCTATGTCGTAGGATGGGGGAAGGGGGCTCAGCAAGGTAC
CTGTACGAGTCATCATTCCACCGGGTAACACCATCGTTTTTCACGGTGTT
GCAAGGCACAGGGGTGTATCGTATTTCACCGACGTTCTGAGATTTTTTAT
CTCGTTTGTCGTGCAGGCCGCCACTGAGCGTGCTGAGGAAACAACGAGCG
TGGTAGAGACGTGGCTGCGCCCGGAGGGAGGTGCGATTTCATTCGATGAT
TGGAAGGAAACATTTATGAGGTTAGTCTAGTATCGTAGTAACGGTTGTGT
TGACGACGATGAATCTCTCTTTTCCCACACTTTTTCGTTTTGGGGTTGGC
GTCGGTTGGCAGCCGGCCTGTTAAAACACGTGCCCGGGGCGATGACACCC
CACACTTTCAAAAGGAGCAAGTCTAGATCACATCGTCTTTGCTTTCGATC
GGAAACATGGATAAAGTTTGTACGTGTGTGCACACGCAGGCAGTCTTGGA
CCCGAAAGAAAAAGCGCGCCAAAATAAACAACAAATCTAGATCACATCGT
ATTTGCTTTCGATCGGAAACGCGGATAAAGTTTGTATGTGTGCGCACACG
CAGACAGTCTTGGACCCGAAAGAAATGCACCAAAGCGCACCAAAATAAAC
AACTCTGTGATAGGGTGGCGCTTAATTTTGACTACGACGATGAATCTCTC
TTTTCCCACACTTTTTCGTTCTGGGGTTGGCGTCGGTTGGCAGCCGGCCT
GTTAAAACACGTGCCCGGGGCGATGACACCCCACACTTTCAAAATGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1169:49836..53983+

>mRNA_P-littoralis_Contig1169.17.3 ID=mRNA_P-littoralis_Contig1169.17.3|Name=mRNA_P-littoralis_Contig1169.17.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1806bp|location=Sequence derived from alignment at P-littoralis_Contig1169:49836..53983+ (Pylaiella littoralis U1_48)
ATGTGGAGACACGACAAGCGTAAAGCGCTGGCGTCAGATACAGAGAAGCA
ACGAAGAGGTGGAGCGAAATACAGCCGGGGCACGCAACCGCACGGCGAGT
CGAAGGCAGAGCGCAGATTCCGGTCGCACTGCAACCATAGGAGGCCGATC
TCCTCAATAAGTGTCCTCCAGATACCAGACGCCATTACGGAGACGGAGAT
CCGGGTGGGCGAATCACCACCTCGCATTAAGACAATCGGAAACAGAAACA
AGCGGAAAGCTGTCCACAGCGAAGTGAAGGAGCGAGGAATCCAGATGCCT
CTTGCCCACCACTTGCGACTTTTCTCGCGGGTAGAATTGGTGATGGACTT
CGTCAAAGCGACTCCCGAAAGGGAACGCATGGAGGATTTGCACAAAGCAG
GGCAGCAAGAGATGATGTACACCATCGAGCAGGGTATCAATTCTCGCTCT
CTCGTCTCAGAAGAGGCATGTATGACGCTGACGCTACTGTTTCTGTTTTC
TTTGGGTCGGGGGTGGTCAAAGCAAAAGCTTGTAGAGTACTGGCaaAAAA
ACATTATGCTTGCTGTCTGTACGGGTGCTGGGCTGTTTGTCCACGAGGTT
TTTGACAAGGACGATGAACTCGCTGCGCAAGCCTTAGAGTGGATGATGCA
GTTTGACACGGACCAAGATTTCAAACCAACACGTTGCTTCATGCAAGTAA
GGCATGTGAACCACCCAAGTGCTAGTGGTCGAGGTGTAGAGGAGGACAAA
GAGGGACGCGGGGAAGAAGAGTGTAGTCCCAGGAAAGCTGAACGTAGACT
CGTCACCCGCCGCATTGGTTGCCACCCTTTCTGCGCAGAATCGTTAAGCG
GTCTTGTAGCACAGCTGGATGGATTCACTACACTTGAGGACGTGCTCGAA
CATGTGGTTGCTTTTGACACACGAATGCCTAGCTCGATCGCACCTCCTCT
ACCTTTGGAGTTCGACTCAGATGTATTGGTCAGATGTTTAGACATACTCC
GTATTAGGAGTGAAATGACCCGATACCGAAAGGAGTTGTTCAACCTTCGC
AAGAACGTTGACATCCTACCTGAGAACGACGACGACGAGAGGGAAGTACA
GGACATGGGCTGGGAGGTGAGTTCGAGTGGCTTTCTTTTTACTTGCTGCG
AGCTACCGATTGATTTTCTCAAGCCTTGTCCAACGAACCGTGCTTTTCTC
AGGCCTTGTCCAACGAACCATGATTTTCTCAAACCTTGTCCAACGAACCG
TGATTTTTTGTTCCCGTGCGGTGTGCGAATTTTTCACAAGGCGATTTCGG
GGTCATGGGTCGAGGAAAACATCAAGGCTCTCGTGCAGCAGTCGCCACCA
TCCTTGCAGTTGGTACACCTGCAAAAGTTTGGGTGGTTCGTCACAGAGTG
TGTTCCATTCTGGCATGTATGCATAGCTGAGGCCCTCGCAGACTTACAAG
CCAGAAAGTACGACATAATTTCCCGCAAAACAGGGTCACATGATTTCGCC
AAGAGATGGGACGAGAAAAGGAAAATTAGCTACGTTGTTCGTGATGATGT
GCTCTACCAGCTGATTACCGAGCCCGTGAAGAGAATGATGAGGGGTTTGG
GACTCCTCGATGTTGTCGGTAAAAAGGGCGTGGAGCGCATAGTTGGTGAC
TGTGCCGCGCTCAAGTCTTTGAAGAGGAATGTAGAGGTTTTGCAGGGGAT
GCATACAGATACGCCACCGCATGCCGATTGGGGTGATGATGTGGCGTTCT
CAACGATCACCGCGGGATCAAAACCGGCCGCCTTGGAGATTTACCCTATG
TCGTAG
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