mRNA_P-littoralis_Contig648.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig648.17.1
Unique NamemRNA_P-littoralis_Contig648.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig648.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig648contigP-littoralis_Contig648:119072..120286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size730
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionReplication termination factor 2, RING-finger
Ec32 orthologEc-25_000040.1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791348.6087294-UTR-P-littoralis_Contig648:119071..1192161680791348.6087294-UTR-P-littoralis_Contig648:119071..119216Pylaiella littoralis U1_48UTRP-littoralis_Contig648 119072..119216 -
1680791348.644081-UTR-P-littoralis_Contig648:119918..1199451680791348.644081-UTR-P-littoralis_Contig648:119918..119945Pylaiella littoralis U1_48UTRP-littoralis_Contig648 119919..119945 -
1680791348.6576927-UTR-P-littoralis_Contig648:120184..1202861680791348.6576927-UTR-P-littoralis_Contig648:120184..120286Pylaiella littoralis U1_48UTRP-littoralis_Contig648 120185..120286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791348.6216612-CDS-P-littoralis_Contig648:119216..1195491680791348.6216612-CDS-P-littoralis_Contig648:119216..119549Pylaiella littoralis U1_48CDSP-littoralis_Contig648 119217..119549 -
1680791348.634128-CDS-P-littoralis_Contig648:119795..1199181680791348.634128-CDS-P-littoralis_Contig648:119795..119918Pylaiella littoralis U1_48CDSP-littoralis_Contig648 119796..119918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig648.17.1prot_P-littoralis_Contig648.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig648 119217..119918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig648.17.1

>prot_P-littoralis_Contig648.17.1 ID=prot_P-littoralis_Contig648.17.1|Name=mRNA_P-littoralis_Contig648.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MCAVADWIERCYFTEETGVDGGPPLCPGHQKECIAGSGVEAGHPGDKTFW
KCAEKENSSRCSFMTERGVRRAEEGAGSIPVGAAICAGGDTPAGGAGPKH
GARAGPLCNGHNKECVLKNGKETVSSCFLGSYCMHVVHALFCGSPLEKRG
V*
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mRNA from alignment at P-littoralis_Contig648:119072..120286-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig648.17.1 ID=mRNA_P-littoralis_Contig648.17.1|Name=mRNA_P-littoralis_Contig648.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1215bp|location=Sequence derived from alignment at P-littoralis_Contig648:119072..120286- (Pylaiella littoralis U1_48)
AAGAATCTTAGGAATATCCCGGCCGGGGGTGCTCGGCACCCCCCCCCCCT
GTGCACGGAGCACGACAAGGAGTGCATCCTCAGGCATGGAAGCGCTTGGA
ATGTGAGTACAGAGTACTTTTAGGTCGCCGTATGGGCGTAGCGGCGCTCA
CCTCTGAATGTTTGCATGCTCCACGTTGTGGTCATCCCCTTTGTGTACGA
TTGCAGTGAACATATTTTCGCACGACTCGAGAGCGTCCCCGCGCCGCCTT
TGTGTTGCCGTTGGTCGCCTTGCCGAAAAGAAATCCTTGAAACTCCCCCC
CTCCCCACCCCTTCCCGGCGGCGGTATGTCCCGAATCACAGGGGCTCCCC
GCGGAGAAGGTCTACTGGATGTGTGCCGTGGCAGACTGGATTGAGCGGTG
CTACTTCACGGAGGAGACAGGCGTGGACGGTGGGCCGCCCTTGTGCCCCG
GACACCAGAAGGAGTGCATCGCGGGTAGCGGAGTAGAGGCGGTGAGTACA
TCGCGGTCGTACATCTGTAATGATTTGTGCAGTTCCCTGGGCGTGACGAG
TGTACGTGCTTTGCCTGATAGGGTTCCCCTCTTGTGTACGTGGATGGTGA
ACATCCTTTCGAACAGGGAGATCGTCCCGCACTGCCAAGTTAGTGTCAGT
GGTTCAGATGCAGCGGCGCAGGAACTAGTGGTATACCGATCTAGCCCTCT
TTCACCAACTGCTTCGTCGACGCTTCGACAAATGCAGGGGCATCCAGGAG
ATAAGACATTCTGGAAGTGCGCTGAGAAGGAAAATAGTTCCCGGTGCTCA
TTCATGACGGAAAGGGGAGTGCGCCGCGCCGAAGAGGGTGCCGGAAGTAT
ACCGGTGGGAGCGGCAATTTGCGCGGGGGGGGACACCCCAGCAGGAGGGG
CCGGCCCGAAACACGGGGCTAGGGCAGGGCCCTTGTGCAACGGCCACAAC
AAGGAGTGCGTCTTAAAGAATGGAAAAGAGACCGTGAGTTCATGTTTTTT
GGGCTCCTATTGCATGCATGTCGTCCATGCTTTGTTTTGCGGGTCCCCTC
TGGAGAAAAGGGGTGTTTAACACGTGGCCACATCCAGAGAATAGTGTCCA
TGCCCTGCGTAGGTGCTGCACCCGGTTTCCTTCAGAAGAGCAGGCCCACT
CTTATGGTAGAGCCGAAAACTGGAATCCAAGGGTTTCACATGAGGAACTG
GAATCCAAATTCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig648:119072..120286-

>mRNA_P-littoralis_Contig648.17.1 ID=mRNA_P-littoralis_Contig648.17.1|Name=mRNA_P-littoralis_Contig648.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig648:119072..120286- (Pylaiella littoralis U1_48)
ATGTGTGCCGTGGCAGACTGGATTGAGCGGTGCTACTTCACGGAGGAGAC
AGGCGTGGACGGTGGGCCGCCCTTGTGCCCCGGACACCAGAAGGAGTGCA
TCGCGGGTAGCGGAGTAGAGGCGGGGCATCCAGGAGATAAGACATTCTGG
AAGTGCGCTGAGAAGGAAAATAGTTCCCGGTGCTCATTCATGACGGAAAG
GGGAGTGCGCCGCGCCGAAGAGGGTGCCGGAAGTATACCGGTGGGAGCGG
CAATTTGCGCGGGGGGGGACACCCCAGCAGGAGGGGCCGGCCCGAAACAC
GGGGCTAGGGCAGGGCCCTTGTGCAACGGCCACAACAAGGAGTGCGTCTT
AAAGAATGGAAAAGAGACCGTGAGTTCATGTTTTTTGGGCTCCTATTGCA
TGCATGTCGTCCATGCTTTGTTTTGCGGGTCCCCTCTGGAGAAAAGGGGT
GTTTAA
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