mRNA_P-littoralis_Contig1166.14.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1166.14.2
Unique NamemRNA_P-littoralis_Contig1166.14.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1166contigP-littoralis_Contig1166:55130..56200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size895
Hectar predicted targeting categoryother localisation
Exons2
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.7124815-UTR-P-littoralis_Contig1166:55129..551491680789484.7124815-UTR-P-littoralis_Contig1166:55129..55149Pylaiella littoralis U1_48UTRP-littoralis_Contig1166 55130..55149 -
1680789484.7317357-UTR-P-littoralis_Contig1166:55773..559081680789484.7317357-UTR-P-littoralis_Contig1166:55773..55908Pylaiella littoralis U1_48UTRP-littoralis_Contig1166 55774..55908 -
1680789484.7427506-UTR-P-littoralis_Contig1166:56084..562001680789484.7427506-UTR-P-littoralis_Contig1166:56084..56200Pylaiella littoralis U1_48UTRP-littoralis_Contig1166 56085..56200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.7233837-CDS-P-littoralis_Contig1166:55149..557731680789484.7233837-CDS-P-littoralis_Contig1166:55149..55773Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 55150..55773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1166.14.2prot_P-littoralis_Contig1166.14.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1166 55150..55773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1166.14.2

>prot_P-littoralis_Contig1166.14.2 ID=prot_P-littoralis_Contig1166.14.2|Name=mRNA_P-littoralis_Contig1166.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=208bp
MDSTAVPSAKRARKSSMGTKRTMAEEGNGARVEQQQQQQQQQQEHQQQHQ
HQHQQGQQDEREPKEEELDGPHAPEGRKDGAAPAETPVVRSMTARPSGAT
SHDEEDTLFDAPVIGPELPRLLGVPPSTSDEAAVLLLWEHAKRSPETIRD
RVKDLAKELATAAGCPHGPELVTFSQNKRAARTCGQHQAHVLAALSMQAR
CHSCIIA*
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mRNA from alignment at P-littoralis_Contig1166:55130..56200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1166.14.2 ID=mRNA_P-littoralis_Contig1166.14.2|Name=mRNA_P-littoralis_Contig1166.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-littoralis_Contig1166:55130..56200- (Pylaiella littoralis U1_48)
CGGCTGCACTCAGATACGGGCAAGAGGACAAACAAACACCGCTCACAGCT
GCTGCTGTGTGTGGTCAAGGGGTGTGAGGGTGCCAAGCAAGACTCAGTCA
ACATAATAAATCCCCGGTGAGTCGAAATCTGAAATCATCTCTTCTGACAC
AGACAGTATAATATTTATTATCTCAAATTTAAAAAAATACAGCATGAACG
AACCGCAACATTTTCAACCGCAACATTTTTTTTTCGACATTTTCTGAAAT
GAAACCGTCAAATTTCTGCGTTATTGGGGCGGGGATGGTAAGGGAGTAAA
TATACCGCAGCAGAACACTGCGGTGAAACAGCGCAACACCGCCCTTGGAC
CAGAGCACAGAGCACATACTGCTGTACGAGCTCAGTGTAGGCGAACAAGA
CGTGAATCAAGCAAAGGCGTGCTGCAGATGGATAGTACTGCTGTCCCCAG
CGCGAAGCGTGCCCGGAAGTCTTCGATGGGCACGAAGAGGACCATGGCCG
AAGAGGGAAACGGGGCAAGGGTTGAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGAGCACCAGCAGCAGCACCAGCACCAGCACCAGCAGGGGCAGCA
GGACGAGAGAGAACCAAAGGAAGAGGAGTTGGATGGCCCGCATGCGCCAG
AGGGCCGGAAAGACGGAGCAGCACCTGCCGAAACACCGGTAGTTCGATCG
ATGACTGCCCGCCCTTCCGGTGCTACTTCCCATGATGAGGAAGACACTCT
GTTTGACGCGCCGGTGATCGGGCCCGAGTTGCCGAGGCTACTGGGTGTGC
CTCCAAGCACCAGCGATGAGGCTGCGGTACTCCTCCTGTGGGAGCACGCG
AAACGCAGTCCCGAGACCATCCGCGACAGGGTGAAGGATCTGGCGAAGGA
GTTAGCCACCGCAGCAGGCTGCCCTCATGGACCGGAACTTGTGACCTTCA
GCCAGAACAAAAGAGCGGCGCGGACCTGCGGGCAGCACCAAGCTCATGTT
CTGGCGGCGCTGAGCATGCAGGCAAGGTGTCATAGCTGTATCATAGCATA
GGTAAAAACCAAAGTCGTAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1166:55130..56200-

>mRNA_P-littoralis_Contig1166.14.2 ID=mRNA_P-littoralis_Contig1166.14.2|Name=mRNA_P-littoralis_Contig1166.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig1166:55130..56200- (Pylaiella littoralis U1_48)
ATGGATAGTACTGCTGTCCCCAGCGCGAAGCGTGCCCGGAAGTCTTCGAT
GGGCACGAAGAGGACCATGGCCGAAGAGGGAAACGGGGCAAGGGTTGAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCACCAGCAGCAGCACCAG
CACCAGCACCAGCAGGGGCAGCAGGACGAGAGAGAACCAAAGGAAGAGGA
GTTGGATGGCCCGCATGCGCCAGAGGGCCGGAAAGACGGAGCAGCACCTG
CCGAAACACCGGTAGTTCGATCGATGACTGCCCGCCCTTCCGGTGCTACT
TCCCATGATGAGGAAGACACTCTGTTTGACGCGCCGGTGATCGGGCCCGA
GTTGCCGAGGCTACTGGGTGTGCCTCCAAGCACCAGCGATGAGGCTGCGG
TACTCCTCCTGTGGGAGCACGCGAAACGCAGTCCCGAGACCATCCGCGAC
AGGGTGAAGGATCTGGCGAAGGAGTTAGCCACCGCAGCAGGCTGCCCTCA
TGGACCGGAACTTGTGACCTTCAGCCAGAACAAAAGAGCGGCGCGGACCT
GCGGGCAGCACCAAGCTCATGTTCTGGCGGCGCTGAGCATGCAGGCAAGG
TGTCATAGCTGTATCATAGCATAG
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