mRNA_P-littoralis_Contig64.171.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.171.1
Unique NamemRNA_P-littoralis_Contig64.171.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.150e-69
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 3 
Query:   27 MAKTPSKKSAKAPKKAGDKKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 374
            MAKTPSKKSAKAPKKAGDKK+ NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.320e-63
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = 3 
Query:   27 MAKTPSKKSAKAPKKAGDKKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 374
            MAKTPSKKSAKAPKKAGDK K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 194 bits (493), Expect = 5.130e-62
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 3 
Query:   27 MAKTPSKKSAKAPKKAGD-KKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 374
            MAK PSKK+AKAPKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.190e-61
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 3 
Query:   27 MAKTPSKKSAKAPKKAGDKKKNNK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 374
            MAKTPSKKSAKAPKK G+K KN K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.500e-60
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 3 
Query:   27 MAKTPSKKSAKAPKKAGD-KKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 374
            MAK PSKK+AKAPKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 189 bits (479), Expect = 6.150e-60
Identity = 99/115 (86.09%), Postives = 109/115 (94.78%), Query Frame = 3 
Query:   27 MAKTPSKKSAKAPKKAGDKKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 371
            MAKTPSKK+AKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
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BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 187 bits (476), Expect = 1.880e-59
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 3 
Query:   27 MAKTPSKKSAKAPKKAGDKKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 374
            MAKTPSK+SAKAPKKA    K+ KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.180e-58
Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = 3 
Query:   12 SQISKMAKTPSKKSAKAPKKAGDKKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 371
            S I  MAKTPSKK+A APKKAG K+ + KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    3 STIVTMAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 120
[Close]
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 181 bits (459), Expect = 7.320e-57
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 3 
Query:   24 KMAKTPSKKSAKAPKKAGDKKKNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 362
            KMAKTPSKKSA  PKKA   K+N KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    5 KMAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116
[Close]
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (455), Expect = 3.380e-56
Identity = 100/119 (84.03%), Postives = 111/119 (93.28%), Query Frame = 3 
Query:   27 MAKTPSKKS-AKAPKKA--GDKKKNNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 371
            MAKTPSK++ AKA KKA  GDKKK +K R ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.150e-6998.28Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA3.320e-6388.79Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA5.130e-6289.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA6.190e-6186.44Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA3.500e-6089.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU6.150e-6086.09Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
B7FWR8_PHATC1.880e-5985.34Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA5.180e-5884.17Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7S2U5X6_9STRA7.320e-5785.84Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]
B8BX20_THAPS3.380e-5684.03Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:691748..692133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size386
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.93e-70
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size360
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791338.1764865-CDS-P-littoralis_Contig64:691747..6921071680791338.1764865-CDS-P-littoralis_Contig64:691747..692107Pylaiella littoralis U1_48CDSP-littoralis_Contig64 691748..692107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791338.1892433-UTR-P-littoralis_Contig64:692107..6921331680791338.1892433-UTR-P-littoralis_Contig64:692107..692133Pylaiella littoralis U1_48UTRP-littoralis_Contig64 692108..692133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.171.1prot_P-littoralis_Contig64.171.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 691748..692107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.171.1

>prot_P-littoralis_Contig64.171.1 ID=prot_P-littoralis_Contig64.171.1|Name=mRNA_P-littoralis_Contig64.171.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MAKTPSKKSAKAPKKAGDKKKNNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSSYSA*
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mRNA from alignment at P-littoralis_Contig64:691748..692133-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.171.1 ID=mRNA_P-littoralis_Contig64.171.1|Name=mRNA_P-littoralis_Contig64.171.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=386bp|location=Sequence derived from alignment at P-littoralis_Contig64:691748..692133- (Pylaiella littoralis U1_48)
TTCCAGCTTACTCCCAAATCAGCAAGATGGCCAAGACCCCCTCCAAGAAA
TCGGCAAAGGCCCCCAAGAAGGCTGGCGACAAGAAGAAGAACAATAAGAG
GACCGAGTCGTACTCTTCGTACATCTACAAGGTACTCAAGCAGGTGCACC
CCGACACCGGTATCTCCAAGCGCGGCATGTCCATCATGAACTCGTTCATC
AACGACGTGTTTGAGCGCGTGGCCGGCGAGTCCGGCAAGCTCACCCGCTA
CAACAAGAAGGCGACCCTCTCCTCGCGCGAGGTCCAGACTGCTGTGCGCC
TTATGCTCCCCGGAGAACTCGCCAAGCACGCCGTGTCCGAGGGTACCAAG
GCTGTTACCAAGTTCACCTCTTCCTACTCTGCCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:691748..692133-

>mRNA_P-littoralis_Contig64.171.1 ID=mRNA_P-littoralis_Contig64.171.1|Name=mRNA_P-littoralis_Contig64.171.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig64:691748..692133- (Pylaiella littoralis U1_48)
ATGGCCAAGACCCCCTCCAAGAAATCGGCAAAGGCCCCCAAGAAGGCTGG
CGACAAGAAGAAGAACAATAAGAGGACCGAGTCGTACTCTTCGTACATCT
ACAAGGTACTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTTGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTCCTCGC
GCGAGGTCCAGACTGCTGTGCGCCTTATGCTCCCCGGAGAACTCGCCAAG
CACGCCGTGTCCGAGGGTACCAAGGCTGTTACCAAGTTCACCTCTTCCTA
CTCTGCCTAG
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