mRNA_P-littoralis_Contig64.148.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.148.1
Unique NamemRNA_P-littoralis_Contig64.148.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.148.1 vs. uniprot
Match: Q8QNJ3_ESV1K (EsV-1-80 n=2 Tax=root TaxID=1 RepID=Q8QNJ3_ESV1K)

HSP 1 Score: 255 bits (651), Expect = 2.150e-83
Identity = 159/208 (76.44%), Postives = 178/208 (85.58%), Query Frame = 1 
Query:    1 PSMENAAPNLYDAIGVSADASTDKIKKKTRKFVSEVRESDKRNSEKNELIRFFKSARETLTDPDARKEYDASIGIETFVRDEDGIDTESMVPFEAFRPXXXXXXXXXXXXXXXX----LAPAETSNKSPSPASALMGLLGEDLHDMFSSSIIPEEM-SSPGDLKRGSFQVLEYTKVRNPSGGFDEFGFSRQGDMQNDRVTEKRFQRKS 609
            P MEN APNLYDAIGVSADAS DKI++KTR+ V+EV+ESDKRNSEKNELIRFFKSARETLTD DARK+YD SIGIETF R+E    T+ MVP+E F+PXXXXXXXXXXXXXXXX    L P +    S SPAS+LMGLLG D+ +MFS SIIPEE+ SS GDLKRGSFQVLEYTKVRNP GGFDEFGF+RQGDM++DRVTEKRF+RKS
Sbjct:    9 PGMENTAPNLYDAIGVSADASADKIRRKTRQLVNEVKESDKRNSEKNELIRFFKSARETLTDSDARKKYDESIGIETFAREERDAGTK-MVPYETFQPXXXXXXXXXXXXXXXXXXSLLGPMQAV-PSRSPASSLMGLLGADVQNMFSDSIIPEELASSHGDLKRGSFQVLEYTKVRNPEGGFDEFGFTRQGDMKHDRVTEKRFERKS 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNJ3_ESV1K2.150e-8376.44EsV-1-80 n=2 Tax=root TaxID=1 RepID=Q8QNJ3_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:567157..567768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons1
Cds size606
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.520251-UTR-P-littoralis_Contig64:567156..5671621680791336.520251-UTR-P-littoralis_Contig64:567156..567162Pylaiella littoralis U1_48UTRP-littoralis_Contig64 567157..567162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.5335553-CDS-P-littoralis_Contig64:567162..5677681680791336.5335553-CDS-P-littoralis_Contig64:567162..567768Pylaiella littoralis U1_48CDSP-littoralis_Contig64 567163..567768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.148.1prot_P-littoralis_Contig64.148.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 567163..567768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.148.1

>prot_P-littoralis_Contig64.148.1 ID=prot_P-littoralis_Contig64.148.1|Name=mRNA_P-littoralis_Contig64.148.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
MENAAPNLYDAIGVSADASTDKIKKKTRKFVSEVRESDKRNSEKNELIRF
FKSARETLTDPDARKEYDASIGIETFVRDEDGIDTESMVPFEAFRPYEPF
GAIGALGNLGSLLAPAETSNKSPSPASALMGLLGEDLHDMFSSSIIPEEM
SSPGDLKRGSFQVLEYTKVRNPSGGFDEFGFSRQGDMQNDRVTEKRFQRK
S*
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mRNA from alignment at P-littoralis_Contig64:567157..567768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.148.1 ID=mRNA_P-littoralis_Contig64.148.1|Name=mRNA_P-littoralis_Contig64.148.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig64:567157..567768+ (Pylaiella littoralis U1_48)
CCAAGCATGGAAAACGCTGCGCCAAACCTTTATGACGCCATCGGCGTCAG
CGCTGACGCGTCAACCGACAAGATCAAAAAGAAGACACGAAAATTTGTAT
CTGAAGTAAGAGAATCAGACAAGAGAAACTCGGAAAAGAACGAACTCATC
CGCTTTTTCAAGAGCGCGCGCGAGACGCTCACTGATCCTGATGCAAGAAA
AGAGTATGACGCATCGATCGGAATCGAGACTTTTGTCAGAGATGAGGACG
GCATTGACACCGAATCAATGGTTCCTTTCGAAGCATTCCGACCTTACGAG
CCATTTGGTGCTATCGGTGCTCTTGGAAATCTTGGCTCTCTGCTCGCTCC
CGCAGAAACGTCAAACAAGTCTCCTTCTCCTGCGTCGGCGTTGATGGGGC
TACTTGGAGAAGATTTGCACGACATGTTTTCTAGTTCTATTATCCCGGAA
GAAATGTCTTCACCTGGCGATCTTAAACGCGGAAGCTTTCAAGTTTTGGA
GTATACCAAAGTCCGCAACCCTTCGGGTGGTTTCGACGAGTTCGGCTTCT
CACGACAGGGGGACATGCAAAACGACCGGGTTACCGAGAAGCGTTTTCAG
CGAAAGTCCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:567157..567768+

>mRNA_P-littoralis_Contig64.148.1 ID=mRNA_P-littoralis_Contig64.148.1|Name=mRNA_P-littoralis_Contig64.148.1|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig64:567157..567768+ (Pylaiella littoralis U1_48)
ATGGAAAACGCTGCGCCAAACCTTTATGACGCCATCGGCGTCAGCGCTGA
CGCGTCAACCGACAAGATCAAAAAGAAGACACGAAAATTTGTATCTGAAG
TAAGAGAATCAGACAAGAGAAACTCGGAAAAGAACGAACTCATCCGCTTT
TTCAAGAGCGCGCGCGAGACGCTCACTGATCCTGATGCAAGAAAAGAGTA
TGACGCATCGATCGGAATCGAGACTTTTGTCAGAGATGAGGACGGCATTG
ACACCGAATCAATGGTTCCTTTCGAAGCATTCCGACCTTACGAGCCATTT
GGTGCTATCGGTGCTCTTGGAAATCTTGGCTCTCTGCTCGCTCCCGCAGA
AACGTCAAACAAGTCTCCTTCTCCTGCGTCGGCGTTGATGGGGCTACTTG
GAGAAGATTTGCACGACATGTTTTCTAGTTCTATTATCCCGGAAGAAATG
TCTTCACCTGGCGATCTTAAACGCGGAAGCTTTCAAGTTTTGGAGTATAC
CAAAGTCCGCAACCCTTCGGGTGGTTTCGACGAGTTCGGCTTCTCACGAC
AGGGGGACATGCAAAACGACCGGGTTACCGAGAAGCGTTTTCAGCGAAAG
TCCTAA
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