mRNA_P-littoralis_Contig1166.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1166.10.1
Unique NamemRNA_P-littoralis_Contig1166.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1166contigP-littoralis_Contig1166:9575..10105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size265
Hectar predicted targeting categorysignal peptide
Exons3
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.565363-CDS-P-littoralis_Contig1166:9575..96301680789484.565363-CDS-P-littoralis_Contig1166:9575..9630Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 9576..9630 -
1680789484.5751355-CDS-P-littoralis_Contig1166:9680..97691680789484.5751355-CDS-P-littoralis_Contig1166:9680..9769Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 9681..9769 -
1680789484.5853288-CDS-P-littoralis_Contig1166:9985..101051680789484.5853288-CDS-P-littoralis_Contig1166:9985..10105Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 9986..10105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1166.10.1prot_P-littoralis_Contig1166.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1166 9576..10105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1166.10.1

>prot_P-littoralis_Contig1166.10.1 ID=prot_P-littoralis_Contig1166.10.1|Name=mRNA_P-littoralis_Contig1166.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
LFIILTIVRAVPGFWNMVSVFLTAPRRVVFAPRPTRRCAYKTKFGLFHDA
DKRYTQTQISRMRRASNTNACCERAVVQIPPTTKFGLS
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mRNA from alignment at P-littoralis_Contig1166:9575..10105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1166.10.1 ID=mRNA_P-littoralis_Contig1166.10.1|Name=mRNA_P-littoralis_Contig1166.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig1166:9575..10105- (Pylaiella littoralis U1_48)
TTATTCATTATTCTCACCATTGTCCGCGCCGTTCCTGGATTCTGGAATAT
GGTGAGTGTATTTTTAACTGCGCCCCGCCGTGTTGTGTTTGCGCCCCGCC
CTACCCGCCGTTGTGCATACGCCATATAAATGATACATTTAGATGACGAG
AACCTGTACCGCTGTATGGATATGGATACAGCTTAGTACTGCTGTCTGTG
TGAGCAAACATGCCAAGCACTGTATCTACGAAATATGGGCTTTAACACGA
CTCCGAGAGGCGATACACGCAAGCCTCAATTTCCGAATGTAGGCACACGC
GCGGCAGCAGCAACCATTAAATCGAAAATCGTGCAGAAAACAAAATTTGG
GCTCTTCCACGACGCCGACAAGCGATACACACAAACCCAAATTTCCCGAA
TGAGACGTGCATCAAACACCAACGCACACGATAAGATCACATCGAAGATA
ACATGCTCCGTGATGACTGCCGCTACTGCTGTGAACGCGCTGTTGTACAA
ATACCTCCCACTACGAAATTCGGACTTTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1166:9575..10105-

>mRNA_P-littoralis_Contig1166.10.1 ID=mRNA_P-littoralis_Contig1166.10.1|Name=mRNA_P-littoralis_Contig1166.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig1166:9575..10105- (Pylaiella littoralis U1_48)
TTATTCATTATTCTCACCATTGTCCGCGCCGTTCCTGGATTCTGGAATAT
GGTGAGTGTATTTTTAACTGCGCCCCGCCGTGTTGTGTTTGCGCCCCGCC
CTACCCGCCGTTGTGCATACAAAACAAAATTTGGGCTCTTCCACGACGCC
GACAAGCGATACACACAAACCCAAATTTCCCGAATGAGACGTGCATCAAA
CACCAACGCCTGCTGTGAACGCGCTGTTGTACAAATACCTCCCACTACGA
AATTCGGACTTTCC
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