mRNA_P-littoralis_Contig1165.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1165.4.1
Unique NamemRNA_P-littoralis_Contig1165.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1165.4.1 vs. uniprot
Match: A0A6H5JQW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.400e-7
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   10 PWTGNFSKGESVEIALRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKI 240
            PW G + +GE  +    +F  ++ A    EG+   + S   IPVG+E I+M+ LR  +  D+V K++  WNMLI  +
Sbjct:  114 PWDGMYRQGEDEQERFSIFPSNMIAMFAQEGVREVVLSDHIIPVGLEGIDMEDLRRMHSPDSVEKAITAWNMLITSV 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1165.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQW6_9PHAE1.400e-735.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1165contigP-littoralis_Contig1165:38913..39282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.5019271-CDS-P-littoralis_Contig1165:38912..392811680789484.5019271-CDS-P-littoralis_Contig1165:38912..39281Pylaiella littoralis U1_48CDSP-littoralis_Contig1165 38913..39281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1165.4.1prot_P-littoralis_Contig1165.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1165 38913..39281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1165.4.1

>prot_P-littoralis_Contig1165.4.1 ID=prot_P-littoralis_Contig1165.4.1|Name=mRNA_P-littoralis_Contig1165.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
DVRPWTGNFSKGESVEIALRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVE
NINMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWR
VFLSHYAVKRSDERNQLEEEWTY
back to top

mRNA from alignment at P-littoralis_Contig1165:38913..39282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1165.4.1 ID=mRNA_P-littoralis_Contig1165.4.1|Name=mRNA_P-littoralis_Contig1165.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=370bp|location=Sequence derived from alignment at P-littoralis_Contig1165:38913..39282+ (Pylaiella littoralis U1_48)
GATGTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGAT
TGCCCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAG
GGCTTGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAG
AACATCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTCAC
AAAATCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCAGC
CTATCCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGT
GTGTTTTTGTCTCATTACGCAGTGAAGAGGTCGGACGAGAGAAACCAGCT
AGAAGAGGAATGGACTTATC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1165:38913..39282+

>mRNA_P-littoralis_Contig1165.4.1 ID=mRNA_P-littoralis_Contig1165.4.1|Name=mRNA_P-littoralis_Contig1165.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig1165:38913..39282+ (Pylaiella littoralis U1_48)
GATGTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGAT
TGCCCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAG
GGCTTGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAG
AACATCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTCAC
AAAATCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCAGC
CTATCCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGT
GTGTTTTTGTCTCATTACGCAGTGAAGAGGTCGGACGAGAGAAACCAGCT
AGAAGAGGAATGGACTTAT
back to top