mRNA_P-littoralis_Contig636.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig636.8.1
Unique NamemRNA_P-littoralis_Contig636.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig636.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig636contigP-littoralis_Contig636:16897..17572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size676
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791325.5336435-UTR-P-littoralis_Contig636:16896..170271680791325.5336435-UTR-P-littoralis_Contig636:16896..17027Pylaiella littoralis U1_48UTRP-littoralis_Contig636 16897..17027 -
1680791325.5567093-UTR-P-littoralis_Contig636:17447..175721680791325.5567093-UTR-P-littoralis_Contig636:17447..17572Pylaiella littoralis U1_48UTRP-littoralis_Contig636 17448..17572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791325.5475955-CDS-P-littoralis_Contig636:17027..174471680791325.5475955-CDS-P-littoralis_Contig636:17027..17447Pylaiella littoralis U1_48CDSP-littoralis_Contig636 17028..17447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig636.8.1prot_P-littoralis_Contig636.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig636 17028..17447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig636.8.1

>prot_P-littoralis_Contig636.8.1 ID=prot_P-littoralis_Contig636.8.1|Name=mRNA_P-littoralis_Contig636.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MIRMIMYTKYQYIDSYALTTFSYRDLFPASSTTYWNLSYCFDLWFILNTQ
DAERARVTNAFSLSKRRERVNIRLVACCIWNPRTMLQLRSSLRTFSCKFP
MEIDMFVSKQRDGIAEPDFAKKIKGKYRRRKRVGKTNAP*
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mRNA from alignment at P-littoralis_Contig636:16897..17572-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig636.8.1 ID=mRNA_P-littoralis_Contig636.8.1|Name=mRNA_P-littoralis_Contig636.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=676bp|location=Sequence derived from alignment at P-littoralis_Contig636:16897..17572- (Pylaiella littoralis U1_48)
CCCCATCTCTCTTTTCTCTCTTGCCCTCTCGATCTTGTTCATATAGTAGA
TAGATAGAATGAAGCAGCCGCTCGTTTACGTTTTTGTTTGTCTGGCTGGA
TTACGCGAGGAGTCTCGGAGCAGATATGATACGAATGATAATGTATACGA
AGTACCAGTATATAGACAGTTATGCGCTTACAACTTTTTCATACCGCGAT
TTATTCCCCGCGTCTTCTACAACATATTGGAATTTATCATACTGTTTTGA
TCTTTGGTTCATATTGAACACCCAGGACGCGGAGAGAGCGCGGGTAACAA
ACGCTTTCTCGCTGTCGAAAAGGCGAGAGAGAGTAAATATCAGGTTGGTC
GCTTGTTGCATATGGAATCCCCGTACAATGTTGCAGCTTCGATCCTCTCT
GAGAACGTTTTCTTGCAAATTTCCAATGGAAATCGATATGTTCGTGAGTA
AACAGAGGGATGGGATTGCTGAACCCGACTTCGCAAAAAAAATCAAAGGC
AAATACCGCAGGAGGAAAAGGGTGGGCAAAACAAACGCACCATAAAAAAC
AAAAGCTCGTGTGTGACCTTCCTTCTGTGTGACCCGGGCTGGTGTACCCA
CTTCATACCACCGAAAGATTTGCAAAGACCAGTGTCCATGATGAATGGGA
TGAATATACAGTACCGGCCCGCTAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig636:16897..17572-

>mRNA_P-littoralis_Contig636.8.1 ID=mRNA_P-littoralis_Contig636.8.1|Name=mRNA_P-littoralis_Contig636.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig636:16897..17572- (Pylaiella littoralis U1_48)
ATGATACGAATGATAATGTATACGAAGTACCAGTATATAGACAGTTATGC
GCTTACAACTTTTTCATACCGCGATTTATTCCCCGCGTCTTCTACAACAT
ATTGGAATTTATCATACTGTTTTGATCTTTGGTTCATATTGAACACCCAG
GACGCGGAGAGAGCGCGGGTAACAAACGCTTTCTCGCTGTCGAAAAGGCG
AGAGAGAGTAAATATCAGGTTGGTCGCTTGTTGCATATGGAATCCCCGTA
CAATGTTGCAGCTTCGATCCTCTCTGAGAACGTTTTCTTGCAAATTTCCA
ATGGAAATCGATATGTTCGTGAGTAAACAGAGGGATGGGATTGCTGAACC
CGACTTCGCAAAAAAAATCAAAGGCAAATACCGCAGGAGGAAAAGGGTGG
GCAAAACAAACGCACCATAA
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