mRNA_P-littoralis_Contig628.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig628.32.1
Unique NamemRNA_P-littoralis_Contig628.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig628.32.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.850e-7
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 3 
Query:   57 RARLSDRSGPF*ISRPG--RMPTTCHHVGCTKQPSYGLAGATTAEFCSEHPKDGMVDVVSKK 236
            R R++ R G       G  RM + C H  CTK+P+YG+AG+   EFCS+H +DGMV+V +K+
Sbjct:   41 RTRVAHRRGXXXXXXXGGSRM-SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
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BLAST of mRNA_P-littoralis_Contig628.32.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.590e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  123 CHHVGCTKQPSYGLAGATTAEFCSEHPKDGMVDVVSKK 236
            C H  CTK+P+YG+AG+   EFCS+H +DGMV+V +K+
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_P-littoralis_Contig628.32.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.150e-6
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 3 
Query:   78 SGPF*ISRPGRMPTTCHHVGCTKQPSYGLAGATTAEFCSEHPKDGMVDVVSKK 236
            S P      GR   +C  +GC+ +PSYG   +  AEFCS+H K GMV+VV K+
Sbjct:  233 STPVIARHRGRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKR 285
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BLAST of mRNA_P-littoralis_Contig628.32.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.680e-6
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 3 
Query:  102 PGRMPTT---------CHHVGCTKQPSYGLAGATTAEFCSEHPKDGMVDVVSKK 236
            P R PT          C   GCT +PSYG AG   AEFCS+H K GM+++VSK+
Sbjct:   11 PSRTPTRLHGQRQRLCCQEDGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKR 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig628.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE6.850e-745.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI1.590e-655.26EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FLW1_ECTSI6.150e-645.28EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JGG2_9PHAE7.680e-648.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig628contigP-littoralis_Contig628:160742..161166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLV4
Model size427
Max annot lvl2880.D7FLV4|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.58e-07
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.8244586-UTR-P-littoralis_Contig628:160741..1608511680791308.8244586-UTR-P-littoralis_Contig628:160741..160851Pylaiella littoralis U1_48UTRP-littoralis_Contig628 160742..160851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.841921-CDS-P-littoralis_Contig628:160851..1611661680791308.841921-CDS-P-littoralis_Contig628:160851..161166Pylaiella littoralis U1_48CDSP-littoralis_Contig628 160852..161166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig628.32.1prot_P-littoralis_Contig628.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig628 160852..161166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig628.32.1

>prot_P-littoralis_Contig628.32.1 ID=prot_P-littoralis_Contig628.32.1|Name=mRNA_P-littoralis_Contig628.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MPTTCHHVGCTKQPSYGLAGATTAEFCSEHPKDGMVDVVSKKCTHLGCTK
QPSHGVVGTTTAEFCSGHAKDGMVDVVGKKCTHRGCTKRPSYGVAGTTTA
EFCSG
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mRNA from alignment at P-littoralis_Contig628:160742..161166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig628.32.1 ID=mRNA_P-littoralis_Contig628.32.1|Name=mRNA_P-littoralis_Contig628.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=425bp|location=Sequence derived from alignment at P-littoralis_Contig628:160742..161166+ (Pylaiella littoralis U1_48)
CGGGAGGAGGGATGGAGACACAGACTGGGATGAGCACGGGAGTGCACGCT
TGACCCCGAGCAAGACTCTCCGATAGATCGGGCCCCTTCTAAATTTCGCG
ACCAGGCAGGATGCCGACCACATGTCACCATGTTGGCTGCACCAAGCAGC
CGAGCTACGGTTTGGCAGGTGCCACCACGGCGGAGTTCTGCTCTGAACAC
CCCAAGGACGGCATGGTGGATGTTGTCAGCAAGAAGTGCACTCACCTTGG
CTGCACCAAGCAGCCGAGCCATGGCGTGGTAGGTACCACCACGGCGGAGT
TCTGCTCTGGACACGCCAAGGACGGCATGGTGGATGTTGTCGGCAAGAAG
TGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGTGTGGCAGGTAC
CACCACGGCGGAGTTCTGCTCTGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig628:160742..161166+

>mRNA_P-littoralis_Contig628.32.1 ID=mRNA_P-littoralis_Contig628.32.1|Name=mRNA_P-littoralis_Contig628.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig628:160742..161166+ (Pylaiella littoralis U1_48)
ATGCCGACCACATGTCACCATGTTGGCTGCACCAAGCAGCCGAGCTACGG
TTTGGCAGGTGCCACCACGGCGGAGTTCTGCTCTGAACACCCCAAGGACG
GCATGGTGGATGTTGTCAGCAAGAAGTGCACTCACCTTGGCTGCACCAAG
CAGCCGAGCCATGGCGTGGTAGGTACCACCACGGCGGAGTTCTGCTCTGG
ACACGCCAAGGACGGCATGGTGGATGTTGTCGGCAAGAAGTGCACCCACC
GTGGCTGCACCAAGCGGCCGAGCTATGGTGTGGCAGGTACCACCACGGCG
GAGTTCTGCTCTGGA
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