mRNA_P-littoralis_Contig626.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig626.15.1
Unique NamemRNA_P-littoralis_Contig626.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig626.15.1 vs. uniprot
Match: D7G2H3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H3_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 8.620e-5
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 KEKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLL 171
            K KKR+RC HTL+VA+F+ + G  ST + +G       A+  ASSGG  LPRTPQ+ 
Sbjct:  119 KNKKRARCAHTLVVAVFSRI-GLDSTASSTGE----GGAAAGASSGGSALPRTPQVF 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig626.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2H3_ECTSI8.620e-549.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig626contigP-littoralis_Contig626:105913..106091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size179
Hectar predicted targeting categorysignal peptide
Exons1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791307.152162-CDS-P-littoralis_Contig626:105914..1060911680791307.152162-CDS-P-littoralis_Contig626:105914..106091Pylaiella littoralis U1_48CDSP-littoralis_Contig626 105915..106091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig626.15.1prot_P-littoralis_Contig626.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig626 105915..106091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig626.15.1

>prot_P-littoralis_Contig626.15.1 ID=prot_P-littoralis_Contig626.15.1|Name=mRNA_P-littoralis_Contig626.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
KEKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVL
PRTPQLLAK
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mRNA from alignment at P-littoralis_Contig626:105913..106091-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig626.15.1 ID=mRNA_P-littoralis_Contig626.15.1|Name=mRNA_P-littoralis_Contig626.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=179bp|location=Sequence derived from alignment at P-littoralis_Contig626:105913..106091- (Pylaiella littoralis U1_48)
AAGGAAAAGAAGCGCTCAAGATGCGTGCACACGTTGATCGTCGCAATCTT
CACGGGCGTCTTGGGGCGGGGTTCGACCGTTGCGAGGAGCGGGACGACGG
CTGATGCAGATGATGCTTCTGGAAGTGCCTCGTCGGGTGGACCTGTGTTG
CCCCGTACTCCGCAGTTGCTCGCCAAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig626:105913..106091-

>mRNA_P-littoralis_Contig626.15.1 ID=mRNA_P-littoralis_Contig626.15.1|Name=mRNA_P-littoralis_Contig626.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig626:105913..106091- (Pylaiella littoralis U1_48)
AAGGAAAAGAAGCGCTCAAGATGCGTGCACACGTTGATCGTCGCAATCTT
CACGGGCGTCTTGGGGCGGGGTTCGACCGTTGCGAGGAGCGGGACGACGG
CTGATGCAGATGATGCTTCTGGAAGTGCCTCGTCGGGTGGACCTGTGTTG
CCCCGTACTCCGCAGTTGCTCGCCAAG
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