mRNA_P-littoralis_Contig623.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig623.52.1
Unique NamemRNA_P-littoralis_Contig623.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig623.52.1 vs. uniprot
Match: D7G1L7_ECTSI (Morn repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 9.950e-17
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 PPANGYKRFVFPDGKGVYDGHWRGYKRHGHGSFSFANGDT 120
            PP +GYKRFVFPDGKGVYDGHWRGYKRHG GSF+F+NGD 
Sbjct:  170 PPVDGYKRFVFPDGKGVYDGHWRGYKRHGQGSFAFSNGDV 209
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BLAST of mRNA_P-littoralis_Contig623.52.1 vs. uniprot
Match: A0A6S9EAG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EAG9_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 1.660e-10
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 PPANGYKRFVFPDGKGVYDGHWRGYKRHGHGSFSFANGD 117
            PP +GYKRFVFPDGKG+Y+G+W+  KRHG G+F F N D
Sbjct:  104 PPRDGYKRFVFPDGKGIYEGYWKDRKRHGQGTFIFENND 142
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BLAST of mRNA_P-littoralis_Contig623.52.1 vs. uniprot
Match: A0A7S2UZS7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.670e-10
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 PPANGYKRFVFPDGKGVYDGHWRGYKRHGHGSFSFANGD 117
            PP +GYKRFVFPDGKG+Y+G+W+  KRHG G+F F N D
Sbjct:  106 PPRDGYKRFVFPDGKGIYEGYWKDRKRHGQGTFIFENND 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1L7_ECTSI9.950e-1785.00Morn repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6S9EAG9_HETAK1.660e-1066.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZS7_9STRA1.670e-1066.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig623contigP-littoralis_Contig623:97997..99145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1L7
PFAMsMORN
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.63e-17
EggNOG OGsCOG5253@1|root,KOG0229@2759|Eukaryota
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-26_000910.1
Description1-phosphatidylinositol-4-phosphate 5-kinase activity
Cds size273
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791300.7279837-CDS-P-littoralis_Contig623:97996..982091680791300.7279837-CDS-P-littoralis_Contig623:97996..98209Pylaiella littoralis U1_48CDSP-littoralis_Contig623 97997..98209 +
1680791300.742601-CDS-P-littoralis_Contig623:99085..991451680791300.742601-CDS-P-littoralis_Contig623:99085..99145Pylaiella littoralis U1_48CDSP-littoralis_Contig623 99086..99145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig623.52.1prot_P-littoralis_Contig623.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig623 97997..99145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig623.52.1

>prot_P-littoralis_Contig623.52.1 ID=prot_P-littoralis_Contig623.52.1|Name=mRNA_P-littoralis_Contig623.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
PPANGYKRFVFPDGKGVYDGHWRGYKRHGHGSFSFANGDTYDGEPGILSG
NGVSRCFWIGFLWVFEMFTGEQCYTGQWKDGKRHGHGRHYF
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mRNA from alignment at P-littoralis_Contig623:97997..99145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig623.52.1 ID=mRNA_P-littoralis_Contig623.52.1|Name=mRNA_P-littoralis_Contig623.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1149bp|location=Sequence derived from alignment at P-littoralis_Contig623:97997..99145+ (Pylaiella littoralis U1_48)
CCTCCCGCCAACGGATACAAGCGGTTCGTGTTTCCTGACGGAAAGGGCGT
GTACGACGGACACTGGAGGGGCTACAAGCGACACGGTCACGGCTCGTTTT
CCTTCGCGAATGGTGATACATACGACGGTGAGCCTGGCATATTGTCTGGG
AACGGAGTCAGTCGCTGTTTCTGGATAGGGTTTCTGTGGGTTTTTGAAAT
GTTTACGGGGGAGGTTTCGCGAGTGTGAACAATGCATTCTAAGCACGTCG
AGTGTTTGCTGATGGTCTACAAGGAAAAACTGTATTTCGGTTCTTCAGAG
ACTGAAGCATTGACTGATTCGACTCAGAGGTGATACCTCATTCTACCGGC
ACATTATTCACACCACCTAATTACATTGCTTTATACCCCTGCTGATATCC
GTGTTGCCACAGGTACGTGGTCCAACGGAGAAATGACGGGAGAGGGGAAG
TATGAACATGCCTCTGGAGAGGTATACGCCGGACAGGTCAGAAGCATGGA
CAAACTTGCTACGGTCAAAGCGTGCGTAGTGACCTTCCAACGAAAACGGG
ACAACCTTGATGGTGATCTCGCTGCGTGAGTCACTGCTTGAGGGGTGGAG
GGTGTTGAATGTGCCCTGTGAGGTTGAGGGGAAGGGAGGAAGGAGTGGGC
TTGGAGCAGTATGCGGCATTGACGGGATTGTGCTAACAGGATAGAGCGCA
CGTCGTCGAGTATTTCGTCCGTATTGGCGGGCAAGGGCTGGCTCTGTTGG
CAACCATTGCATAAATAGCCCTGCTTGCACAACTTCGATTCCTGTCGGTT
CTCTAATACCCTGTTTTCGATAAACGCGGTAAAAATACCGAACTACCTTG
CATTCGTCGGAATTGTTGCACCAGATCAAACACAACACTCCCGTGAGCTG
AGATTTGGTAAGCGTCGAAAAATCGCGCGAACTCTACAAGACCGATCCAC
ACTCACAAGCCCCATTTTGCTTGTGTGCACCACGCGCGCATCCCCCCCAT
AATAATTTCCGACGCGCAAATGCCCTGACAAAAAGTTCAAAGAAGGACGA
ATGCACGGGAAAGGAGTCTACACCTGGCCCGCCATCCAGCAGTGCTACAC
CGGTCAATGGAAGGACGGGAAACGGCACGGTCATGGGCGGCACTACTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig623:97997..99145+

>mRNA_P-littoralis_Contig623.52.1 ID=mRNA_P-littoralis_Contig623.52.1|Name=mRNA_P-littoralis_Contig623.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig623:97997..99145+ (Pylaiella littoralis U1_48)
CCTCCCGCCAACGGATACAAGCGGTTCGTGTTTCCTGACGGAAAGGGCGT
GTACGACGGACACTGGAGGGGCTACAAGCGACACGGTCACGGCTCGTTTT
CCTTCGCGAATGGTGATACATACGACGGTGAGCCTGGCATATTGTCTGGG
AACGGAGTCAGTCGCTGTTTCTGGATAGGGTTTCTGTGGGTTTTTGAAAT
GTTTACGGGGGAGCAGTGCTACACCGGTCAATGGAAGGACGGGAAACGGC
ACGGTCATGGGCGGCACTACTTC
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