mRNA_P-littoralis_Contig623.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig623.46.1
Unique NamemRNA_P-littoralis_Contig623.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: A0A6H5KDJ3_9PHAE (Eukaryotic translation initiation factor 6 n=2 Tax=PX clade TaxID=569578 RepID=A0A6H5KDJ3_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 6.510e-162
Identity = 243/245 (99.18%), Postives = 245/245 (100.00%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 985
            MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPD+VVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDL+ADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT
Sbjct:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLLADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 245
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: A0A4D9D8K6_9STRA (Eukaryotic translation initiation factor 6 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8K6_9STRA)

HSP 1 Score: 421 bits (1083), Expect = 1.140e-139
Identity = 204/244 (83.61%), Postives = 229/244 (93.85%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 982
            MATR QFENSNEIGVFS+LTNSY L ++GGSENFYS+FE ELADHIPV+H S+AGCRFVGRV +GNKRGLLVP+TTTDQELQH+RN+LPD VV+QRVEERLSALGNCIV NDHVALVHTDLDRETE+++ADVLGVEVFRQTIAGNALVGSY+ ITNQGGMVHP+T++ED+EELSSLLQIPLVAGTVNRGSDVLGAG+VANDW AFCGLDTTSTEISVVESIFKL +  P N+V ++R+SLIDSL
Sbjct:    1 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFVGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 244
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: W7UBL7_9STRA (Eukaryotic translation initiation factor 6 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBL7_9STRA)

HSP 1 Score: 422 bits (1086), Expect = 5.270e-139
Identity = 204/245 (83.27%), Postives = 230/245 (93.88%), Query Frame = 2 
Query:  248 TMATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 982
            +MATR QFENSNEIGVFS+LTNSY L ++GGSENFYS+FE ELADHIPV+H S+AGCRF+GRV +GNKRGLLVP+TTTDQELQH+RN+LPD VV+QRVEERLSALGNCIV NDHVALVHTDLDRETE++VADVLGVEVFRQTIAGNALVGSY+ ITNQGGMVHP+T++ED+EELSSLLQIPLVAGTVNRGSDVLGAG+VANDW AFCGLDTTSTEISVVESIFKL +  P N+V ++R+SLIDSL
Sbjct:   72 SMATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: H3G8Q6_PHYRM (Eukaryotic translation initiation factor 6 n=27 Tax=Oomycota TaxID=4762 RepID=H3G8Q6_PHYRM)

HSP 1 Score: 413 bits (1062), Expect = 1.600e-136
Identity = 201/245 (82.04%), Postives = 225/245 (91.84%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 985
            MATR QFENSNEIGVFSKLTNSY L  +GGSENFYS FESELA+HIPVVH S+AGCRFVGRV VGNKRGLL+P+TTTDQE+QH+RNALPD+VV+QRVEERLSALGNCI TNDHVALVHTDLDRETE++VAD LGVEVFRQT+AGNALVGSY+ ++NQG +VHPRTS+ED EELSSLLQ+P+VAGTVNRGSDV+GAG+V NDWTAFCGLDTTSTEISVVESIFKL    P+ I  SMRS+LIDS+T
Sbjct:    1 MATRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELAEHIPVVHASVAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDSVVVQRVEERLSALGNCIATNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPTAIATSMRSALIDSMT 245
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: A0A482RUG4_9ARCH (Translation initiation factor 6 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUG4_9ARCH)

HSP 1 Score: 411 bits (1057), Expect = 8.960e-136
Identity = 202/245 (82.45%), Postives = 223/245 (91.02%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 985
            MA RAQFENSNEIGVFS LTNSYAL +IGGSENFYSVFE ELADHIPVVHTSIAGCRFVGRV VGNKRGLLVP+T TD ELQHLRNALP+++VIQRVEERLSALGNCIVTNDHVALVHTD+DRETED++ADVLGVEVFRQT+AGNALVGSY  I+NQGG+VHPRT++ED+EELSSLLQ+PLVAGTVNRGSDV+GAG+V NDW AFCG+DTTSTE+SVVE IF+L       I   MRSSLIDSL+
Sbjct:    1 MAIRAQFENSNEIGVFSNLTNSYALVAIGGSENFYSVFEQELADHIPVVHTSIAGCRFVGRVTVGNKRGLLVPSTCTDTELQHLRNALPESIVIQRVEERLSALGNCIVTNDHVALVHTDIDRETEDIIADVLGVEVFRQTVAGNALVGSYCKISNQGGLVHPRTTVEDLEELSSLLQVPLVAGTVNRGSDVVGAGLVVNDWAAFCGMDTTSTELSVVEGIFRLGGNDAQRIAKDMRSSLIDSLS 245
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: L1K0B2_GUITC (Eukaryotic translation initiation factor 6 n=2 Tax=Cryptophyceae TaxID=3027 RepID=L1K0B2_GUITC)

HSP 1 Score: 402 bits (1032), Expect = 5.140e-132
Identity = 190/244 (77.87%), Postives = 220/244 (90.16%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 982
            MATR QFEN+NE+GVF++LTNSY L  IGGSENFYSVFESELADH+PV+H SIAGCR +GR+CVGN +GLL+PNTTTDQE+ H+RN+LPD+VV+QR+EERLSALGNCI TND+VAL HTDLDRETE++VADVLGVEVFRQTIAGN LVGSY  +TNQGGMVHPRTS+ED +ELSSLLQ+P+VAGTVNRGSDV+ AG+  NDW+AFCGLDTTSTEISV+ESIFKL    PS IV  MRSSLID++
Sbjct:    1 MATRVQFENNNEVGVFARLTNSYCLVGIGGSENFYSVFESELADHVPVIHASIAGCRIIGRLCVGNSKGLLLPNTTTDQEMLHIRNSLPDSVVVQRIEERLSALGNCICTNDYVALTHTDLDRETEEIVADVLGVEVFRQTIAGNVLVGSYCCLTNQGGMVHPRTSVEDQDELSSLLQVPIVAGTVNRGSDVIAAGLCVNDWSAFCGLDTTSTEISVIESIFKLRNAQPSRIVTEMRSSLIDAM 244
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: D8R476_SELML (Eukaryotic translation initiation factor 6 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R476_SELML)

HSP 1 Score: 399 bits (1025), Expect = 5.540e-131
Identity = 193/244 (79.10%), Postives = 223/244 (91.39%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 982
            MATRAQFENS++IGVFSKLTN+Y L +IGGSENFYS FESELADHIPVV  SI+G R +GR+CVGNK GLL+PN+TTDQEL H+RN+LPD VV+QRVEERLSALGNCI TND+V+LVHTDLD+ETE+LVADVLGVEVFRQTIAGN LVGSY V +N+GG+VHP TSIED++ELSSLLQ+PLVAGTVNRGSDV+GAG++ NDWTAFCGLDTT+TE+SVVES+FKL E  PS IVN MR+SLID+L
Sbjct:    1 MATRAQFENSSDIGVFSKLTNAYCLVAIGGSENFYSTFESELADHIPVVKVSISGTRVIGRMCVGNKNGLLLPNSTTDQELLHIRNSLPDRVVVQRVEERLSALGNCIATNDYVSLVHTDLDKETEELVADVLGVEVFRQTIAGNVLVGSYGVFSNRGGLVHPHTSIEDLDELSSLLQVPLVAGTVNRGSDVIGAGLIVNDWTAFCGLDTTTTELSVVESVFKLRESQPSAIVNEMRASLIDTL 244
[Close]
BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: F0W0Q4_9STRA (Eukaryotic translation initiation factor 6 n=2 Tax=Albugo TaxID=65356 RepID=F0W0Q4_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 5.540e-131
Identity = 192/245 (78.37%), Postives = 222/245 (90.61%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 985
            MA R QFENSNEIGVFSK+TNSY L  +GGSENFYS FE+ELADHIPV+H SIAGCRFVGRV VGNKRGLL+PNTTTDQE QH+RNALPD+VV+QRVEERLSALGNCIV+NDHVALVHTDLDR+TE++VAD LGVEVFR+TIAGNALVGSY  ++NQG +VHPRTS ED+EELSSLLQ+P+VAGT+NRGSDV+GAG+V NDWTAFCGLDTTSTEISV+ESIFKL    P    +++R++LID++T
Sbjct:    1 MAIRCQFENSNEIGVFSKVTNSYCLVCVGGSENFYSNFEAELADHIPVIHASIAGCRFVGRVAVGNKRGLLLPNTTTDQEFQHIRNALPDSVVVQRVEERLSALGNCIVSNDHVALVHTDLDRDTEEIVADALGVEVFRETIAGNALVGSYCGLSNQGCLVHPRTSAEDLEELSSLLQVPVVAGTINRGSDVIGAGLVVNDWTAFCGLDTTSTEISVIESIFKLQNAQPMTASSTIRNALIDTMT 245
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BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: A0A024T958_9STRA (Eukaryotic translation initiation factor 6 n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024T958_9STRA)

HSP 1 Score: 399 bits (1024), Expect = 7.820e-131
Identity = 192/245 (78.37%), Postives = 224/245 (91.43%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 985
            MA R QFENSNEIGVFSKLTNSYAL  +GGSENFYS FE+ELADHIPV+H S+A CRF+GRV VGNKRGLL+PN+TTDQE+QH+RN+LPD+VV+QRVEERLSALGN +  NDHVALVHTDLDRETE+++AD LGVEVFRQTIAGNALVGSY+V++NQG +VHPRT+++D EELSSLLQ+P+VAGTVNRGSDVLGAG+V NDWTAFCGLDTTSTEISVVESIFKL    P+ I +++RS+LIDS+T
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNSYALVCVGGSENFYSTFEAELADHIPVIHCSMASCRFIGRVSVGNKRGLLLPNSTTDQEMQHIRNSLPDSVVVQRVEERLSALGNVVACNDHVALVHTDLDRETEEIIADTLGVEVFRQTIAGNALVGSYSVMSNQGCLVHPRTTVDDQEELSSLLQVPVVAGTVNRGSDVLGAGMVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPNAIASNLRSALIDSMT 245
[Close]
BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Match: A8HUE0_CHLRE (Eukaryotic translation initiation factor 6 n=9 Tax=Chlamydomonadales TaxID=3042 RepID=A8HUE0_CHLRE)

HSP 1 Score: 397 bits (1020), Expect = 3.100e-130
Identity = 183/244 (75.00%), Postives = 225/244 (92.21%), Query Frame = 2 
Query:  251 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 982
            MATR QFENSN++GVF+KLTN+Y +C++GG+ENFYSVFE+EL+DHIPV+ TS+AG R VGR+ VGN+ GLL+PNTT+DQELQH+RN LPD VV+QR++ERLSALGNCIV ND+VAL+H D+DRETE++VADVLGVEVFRQT+AGN LVGSYA +TNQGG+VHP+TSIED++ELSSLLQIPLVAGT+NRGSDV+GAG+VANDW AFCGLDTTSTE+SV+ES+FKL +  P NIVN +R+SLID++
Sbjct:    1 MATRTQFENSNDVGVFAKLTNAYCICALGGAENFYSVFEAELSDHIPVIKTSVAGTRLVGRLTVGNRNGLLLPNTTSDQELQHIRNCLPDEVVVQRIDERLSALGNCIVCNDYVALIHPDIDRETEEIVADVLGVEVFRQTVAGNVLVGSYAALTNQGGLVHPKTSIEDLDELSSLLQIPLVAGTINRGSDVIGAGLVANDWAAFCGLDTTSTELSVIESVFKLRDAQPMNIVNDLRASLIDTM 244
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDJ3_9PHAE6.510e-16299.18Eukaryotic translation initiation factor 6 n=2 Tax... [more]
A0A4D9D8K6_9STRA1.140e-13983.61Eukaryotic translation initiation factor 6 n=1 Tax... [more]
W7UBL7_9STRA5.270e-13983.27Eukaryotic translation initiation factor 6 n=1 Tax... [more]
H3G8Q6_PHYRM1.600e-13682.04Eukaryotic translation initiation factor 6 n=27 Ta... [more]
A0A482RUG4_9ARCH8.960e-13682.45Translation initiation factor 6 n=1 Tax=archaeon T... [more]
L1K0B2_GUITC5.140e-13277.87Eukaryotic translation initiation factor 6 n=2 Tax... [more]
D8R476_SELML5.540e-13179.10Eukaryotic translation initiation factor 6 n=2 Tax... [more]
F0W0Q4_9STRA5.540e-13178.37Eukaryotic translation initiation factor 6 n=2 Tax... [more]
A0A024T958_9STRA7.820e-13178.37Eukaryotic translation initiation factor 6 n=10 Ta... [more]
A8HUE0_CHLRE3.100e-13075.00Eukaryotic translation initiation factor 6 n=9 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig623contigP-littoralis_Contig623:83623..90078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000018952
PFAMseIF-6
Model size2433
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.27e-146
EggNOG OGsCOG1976@1|root,KOG3185@2759|Eukaryota,1MARB@121069|Pythiales
Ec32 ortholog descriptionTranslation initiation factor IF6
Ec32 orthologEc-26_000880.1
DescriptionEukaryotic translation initiation factor 6
Cds size738
COG categoryJ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig623.46.1prot_P-littoralis_Contig623.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig623 83873..88633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791300.4932685-UTR-P-littoralis_Contig623:83622..838721680791300.4932685-UTR-P-littoralis_Contig623:83622..83872Pylaiella littoralis U1_48UTRP-littoralis_Contig623 83623..83872 +
1680791300.554113-UTR-P-littoralis_Contig623:88633..900781680791300.554113-UTR-P-littoralis_Contig623:88633..90078Pylaiella littoralis U1_48UTRP-littoralis_Contig623 88634..90078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791300.5077124-CDS-P-littoralis_Contig623:83872..840651680791300.5077124-CDS-P-littoralis_Contig623:83872..84065Pylaiella littoralis U1_48CDSP-littoralis_Contig623 83873..84065 +
1680791300.5193768-CDS-P-littoralis_Contig623:87085..872611680791300.5193768-CDS-P-littoralis_Contig623:87085..87261Pylaiella littoralis U1_48CDSP-littoralis_Contig623 87086..87261 +
1680791300.533326-CDS-P-littoralis_Contig623:87708..878731680791300.533326-CDS-P-littoralis_Contig623:87708..87873Pylaiella littoralis U1_48CDSP-littoralis_Contig623 87709..87873 +
1680791300.5453815-CDS-P-littoralis_Contig623:88429..886331680791300.5453815-CDS-P-littoralis_Contig623:88429..88633Pylaiella littoralis U1_48CDSP-littoralis_Contig623 88430..88633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig623.46.1

>prot_P-littoralis_Contig623.46.1 ID=prot_P-littoralis_Contig623.46.1|Name=mRNA_P-littoralis_Contig623.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVH
TSIAGCRFVGRVCVGNKRGLLVPNTTTDQELQHLRNALPDTVVIQRVEER
LSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGS
YAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVAN
DWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT*
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mRNA from alignment at P-littoralis_Contig623:83623..90078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig623.46.1 ID=mRNA_P-littoralis_Contig623.46.1|Name=mRNA_P-littoralis_Contig623.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6456bp|location=Sequence derived from alignment at P-littoralis_Contig623:83623..90078+ (Pylaiella littoralis U1_48)
CCAAGCTGGTGCGCCTCGGACCTCTGCCTGTGCAGTGACCTTGTTGCCTG
AAAGCTACCCTTACACGCCACAACAGCACCAACAGCTTCCCTACCCTCCT
TTGCAGCGCAATCGAATAGGAACCAGCCCGCAGTTAATCAATCTCAACGC
TGAGGGGGAAGCAGTTGCAGTTCGCTGAACAAGCCTTCGCTCGCAGCCCA
TACCGTCCAGTCACACCACACCGGTGAAGCCTGATCGCCTCTTTGAGACC
ATGGCGACCCGTGCCCAGTTCGAGAACTCAAACGAAATTGGCGTCTTCTC
CAAGCTCACCAACAGCTACGCGCTATGCTCCATCGGTGGCAGCGAGAACT
TCTACAGCGTGTTCGAGTCTGAGCTGGCGGATCACATCCCGGTCGTTCAC
ACCAGCATCGCGGGGTGCCGATTTGTGGGGCGTGTGTGCGTGGGTGAGAG
TGGTGTCCTCTGTGTGCATGCCTGGCTGCGTGTGTGTGTGTGTGTGTTGT
CATCCCATAATCTCTGGCACACTAGTATGCACCCTGCGGTTCAAACTACA
GGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGA
GTTACCCCCACCTTTCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGA
GCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTA
CTAACAGCATAGCCGCTTTCAGAGTAGCAAAGGAACACATTCACCGGGGA
TCGAACCCCCGTTCCTCTGGATCTAGTGGTGATCGAGGGGACTACTAGTC
CACCGGGGCGACCGATGTGTGTGTGTGTGTGTGCGCGCGTGTGTGTGTGC
GTGTGTGTGTGTGCGTCCCTGCAGACGAGACCCGTGGATATCGTTCGGTG
ATGAGTCCGGATCCGGTTTCCTACGCCTGCAGCAGTAGTCCTTCGTCACC
TTTCGTTGCCCTGTATAATATGGTGGTGTCATGAGGTCGAAACGCAGAGA
TCAAGTCCCAAAATAAGAAAGTAAGCTCTTTGATTCAAAGTTTACAGGTA
TTTAGAGCAGCACAACACACGGCACTGACCGCTAGCCGCTGGCCGCCGCG
GGGTTGTTTAGGGCCCGGATTAACGGGGAATTGATAAAAAACGAAATTGC
GAAAAAGAAATGAAATTGCGCTCTGATCGGCCCGAGAAAAAGGCAGAAAG
AGGCGTTATTTCTTTGAAAGAGGCGTGTCTCCGATTCAGCACACACCGAG
CAGGCGGTATTTCGTTTTTTTCTTCGCGAAAATAAAGTGTTTTGGACCTT
TTTTTTTTTGCGAAATCAAAAACGAAATACCGCCTCCTAGGCTTGTGGGC
GGGGACGCTTCAGCTCTGCGAGGCACCACTGGTAGACTTTTGTACAGCAG
ACAAGTTCATATGTTGACTGATAACTCGCGACACAAGCGACGAAATTCCC
TGCTATTTGCATGTCTAGAGAGGTGGGTTTGAAGTGATTTGGGGATGCCC
AAGGTTCGGGGCAGTAGGGTGTCAAGCGTGACGCGAAAAAAGTTTTCAAC
TCGTGCACAACGACACGCTTTTGCTGTGAGCCGCTTTTTCGGGTGAGTTC
GCAAGCAGCCAATTTCACGTTTCCACTGATATCTCGCCGGAAAACGGATG
AAATTCCCTACCAATTGCGTGCCTAGAGAGATGGGTCTAATGTCCATCGG
GAACACCCAAGGGTTGGGGTCGGTGAGTATCGAGCGTGACGGGAAACAAG
CGATCAGCCATCCAAAAAATGTCAAAAGTTATCGCAAACGGTGTCCTCTC
GTGTACTGCTGTATCCCCTCTTCTTCTCCACCCTGGTACGAGGTCCGCTG
CAGCGGCGTGAAAAAAAAAAGGATGCTCGTTCCATTAATACTCCGGAGTA
CTCAACAACTATTTTATTTTTTTATTTACAGAAGAACGGACTTATTTCGT
TGTCTTTTTCGCAATTTTGTTTTTTTCAATTCCCCGTTAATGCGGGCTCT
TAGTGTGTATCATATGATATGTATCATACACACTAAGAGCCCGCATTAAC
GGGGAATTGAAAAGTATCATAACCCCGAAGCCTTTTACACAAAACTCAGT
AGATAGGTATGTCGTGATTGGAAATATTGATTGTGACATTTTCTTACACC
ATGACAGTGAAATCGGTTACTCCGTTTTTCGTAAATGAACATTCTGGTTG
GCTACTACTCCGGAGTATATGATAAATCGGTGGGAATTGCAACCTGTCGA
CATCTGAGCTCGGCAGTTGGGCACTTGGCACCTGATTTTATTACTCCGTA
TTTATTTATTATTTTGGGCTGGACTTCACGGCGGTTCGTTTGTTTGCAGC
GTCCAAAGCTCCGTATATATAAATCAGGTGTTGTAGTTTTTTGTTTTGTT
GTTATTGGTGGTGGTGGTGGTGTTTGTCATATACTCCGAGTATACGCTTT
TGGGCCTTACCCTTTGGTGGGGTTGAGCATCAGAAATGAGCGACAGAAAT
GAACATCTGATTCATTTTTAGGTTCGGTTGCTCGTGCGTAGTAGTAAGTG
CTCCAGCGCTGCCCAATCGTCATGCTCGGAGGAGCCAGTTGTGTCGTACA
GCACCTCGTGTGCCATCAACAACACACCGGAGGTACGCCGGCGAATGCTT
CCTGCAACTATTTCACATTGTACAGATACATCGTGGTGACAGCAGCAGGT
TTGAGTGATGAACAACAGAGACGGGCAGCAACAAAACACACCAGATGGAG
GATTGGCTACATACGGCAGCAGTAGCATGTCACGTGCCAGCAGTGGAGAC
ACGAATGCCCCGATACAACAGCACGTAGGGGTACACCGGCAAGAGCTTCC
CACCACGTGTGCCGCAACGTCAACCACAAGATTTATGTGTTTTTAGAGAT
AAACAACAAGCAGCAGCAGCAGCAGCAGCCGTGAGTGCGCGCTAGAGAAG
CCGAAGACCTACGCCTCTAGGCTGTAAGAGATGTGCAGACACGGAAAAAA
AATATGAGTGAGAATACGTACAGGAACTTTTGCGTTTGACAAAAAAAAAA
GATTACTCAACTAGCCTCTCGTAAAGGAGTCCAGTGCCAACAGGGTGAAC
TCTAAATGTTCTAGCACGTGGTGGTCAACCCGGCACAACGAACACCAAAA
AAGGAAAATAAACAACTGTCGACGCAAAATACCTTGTAGTACAGCAGTCA
GTCAGTACAGACTAAAGTATTTCGCACACTACTGCCGAGTAAAAATTCGT
GCGGAAATTACGTGCGACGTTTCTTTTTTCGATATAAAGAAAGCGATGTA
AAACAAGTGAACCAAAGTGGATGGTACGGTACCCAATCCCCCCCCCCCTC
TCGCCCTTTCATGTGTTTTGGATATGATATCAATACAAGTAATACTCAAT
TCCCCCGCTTTCCCCATTCGTCACGCTCATCTTCATCGCGCGGCAACATA
TCCCACCGCACAGGCAACAAACGAGGGCTGCTGGTTCCCAACACAACGAC
AGATCAAGAGCTGCAGCACCTCCGAAATGCCTTGCCGGACACGGTGGTGA
TCCAGAGGGTGGAGGAACGCCTGTCCGCCCTGGGCAACTGTATCGTCACC
AACGACCACGTCGCACTGGTGCACACAGACCTCGACAGGGTGAGTCAATC
TGGCTATGATTTTTGTGTTTTTGTATTGTTGTTGTTGTTGTTGTTGTTGT
TGATTCTCACATTAGCCTTGCCATCGAAGAAAACGGAGCAAAAGAAGGCC
ATCCCTGGAACTAGAGAAAGACAGGCAATAGATGCCGCCCAACCTATAGG
TGTATGGTATCTTCTGTCGTGGTCAAAACATATGGAACCAAAAATGCAGA
CTTCAACACATTTGAACATAAAAATCAACCGGAAAACATGGTGCCCATCA
AAGAAATGGCAGTCCGAAATGGAAAGAAGACGAGAACAGCGATACAAAGT
ACTTCTCTCGAGATCAAAACGACCATATGGAAAGGAGGAGAGGATAAACA
AAGCACGCTCGCGCGCGTGTGTGTGTGTGTGTGTGCGTGCCCTCACTTCA
TACCACCGCCGCCCTTGCCACGCATCTTGATGACAGGAAACCGAGGACCT
GGTGGCGGATGTGCTGGGTGTGGAGGTGTTCAGGCAAACGATCGCCGGTA
ACGCTTTGGTGGGGAGCTACGCGGTGATCACCAACCAGGGGGGAATGGTC
CACCCGCGGACATCCATCGAGGACATCGAGGAGCTCTCGAGCCTGCTTCA
GGTGACTCGACCCCTCTCTCTACCAAAGCGCCTCGCTCGTTGAACTCCGA
CAGTTTCCTCGGCAGACTTGCCCTCCTCCTCGACTCGTCGGAGCCGGTGT
CCGTGTAGCCACTGCGGTTGGAGCTTTCCCCCGGGAATTTTTTTTTTTTT
TGCCCGGATGTACTTCACCGGCACAGCCTGACTGCTCGTACAGCACACGA
CGGGTATGTAACGGTAGCCCTTCGCACCCGTGCCGTTCTGGATTGTTGCC
TACACGGCCCTTCCGTCGACACTCTTCTTCGCCGGACGCCGCTTATCCGC
ACCCTCACTCATGCGCGTTTTTTTTTTTGCCTTGCGGTTCGAGATTGTGC
GGGCGGCATCACGTCGCTGCGACTTCATGTATTTGTTCGTGTGGTCGTGC
CCCACCGCTGTGGATGTACACCATACCTGTCCCCTTTCACTTTGAATGGA
CGCTCGTCGTGGCCACCCCAACTGTTGCTGATTTGCAATTACGTGCCCCC
CCCCCCCTGCACGTGCGCGAATGCATTCGCCACAAACCTCCTGAAACCTT
TCTTCAGATTCCGTTGGTGGCGGGAACGGTAAACCGGGGGTCCGATGTGC
TCGGAGCGGGTGTCGTAGCGAACGACTGGACCGCGTTTTGCGGGCTGGAC
ACAACATCTACGGAGATTAGCGTCGTAGAATCCATCTTCAAGCTCAACGA
GCAGGGGCCTTCCAACATCGTCAACAGTATGCGGAGCTCTCTCATCGACT
CGTTGACATGACCTGGTCAAGGGAGAGAGAGTAGAAGAACGGTTTCATTT
CCCCCCCCACACGAGTGTTTTTCCGGGAGATGTGGTGATTGCAGAAGGAT
CAATTTTTTCGTCAACCGTCTATATAAAGCTTCTTGTTGCTGTCGGGCGT
AGCGCATGTATCAGGTTGCAGTTCACAGGCAAACCAAGCAGTTACCGCGG
GCAACACAGCGGCGTGGAAAGAGAATCCGAAAATCTGGGAATCCCACAGT
GAAGGAAAAGCCCACCACGGTTACATCACTCAACGTACTTCGAAGTATAT
TTTGACGAAGGACTGCAGACCAGCAAGATAGGAAACCGTTTGCGGTGGAA
CTCCGCGCGATTATGGTGTTTGTACTGGGCACATCACCCCCCCCCCGTCC
CTTCGTGCCGGTGGAACTCGTTCGCACTGAGGACGTACGTATGGTACCGG
GGATATCATTCATTCCCCCCCTTCTCCTCGTCCTTGCGAGCGTCGGAGCG
GGAGACTCTCTCGAATACCTTTTGAGTAGAGTCGGTCAAGGTCAAACAAA
GGTTCGAGATGCGGCAACGCTTCCATAGACAACCCCCTCCGGGTGCTCAG
CCGTGTTGAAAGGATTGGCTCGCACCGGTGGGAAGCCCTGAAGCACTCGT
TTCTTGAGTTGTGTTTTCCTCCCGTCTTGATTTTCTTCGGTTTTGTAGTC
GAGCGGTTCCTGCCGTCGTTACAGTCATGTATCTATCGTGCTCGCCAAAA
CACAACGAAGAAGGTATCCGGCCGGCCATGTAGTGGCGCGGCCTACGGCT
GTCTCGCCCCCTCGGTAGCTTGCCTTCTCTAGCTTATGCTAGCGATGAAT
CCCATTGCGGAGAAGAAACAAGCGTTTTGTTGTTCGTGGACGATGATTTT
GTCAAGGTTGACCGTGTGTGCGTGCAAGCACGCGTTTGTCGTCGTGGGAC
GCTGTGGTCAGTATTGCGAACCGAACGCGTCGCAAGATAATGTTGGTATA
TTCGCTCCCGCCGTCTTGTTTTTTTGCGTGTCCTCAAGTCGTGGTGCATG
CTTGTCCCCTCTAGGTCTGACTGGCCGGGGGTTTTGTTGCCCGGCGGAGG
GGAGAGGGCATACCGTGGCGGTTACAGGGCGCGGATAGTCCCGTCAAACT
TTGCCTTGAAATTTGCGACAGAGTTGACGCGGGTGAAAGTGGCTATCGTA
CTGAGTTCATGGACCCGTTTACCCTTTGATGTGAAACTTACGTTTCACTT
GACACGCAAGAAGGAGTATCGTGGCGCCGGGGTCCTGCCGAAACCGTCCA
TTTTTGTATCCGTAGTGCTCAACCGTAGACCCCGTCGGAGGGACTCTTTG
ACAAAAAAATTTGCCCGTCCTGACACTTTTTTTCCTCCTGTTATCCGGTC
TTCCGGCTGGGTTGTACAGCGGTACTTCTGAATTTGATAAGAGTCCTTTT
TTTCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig623:83623..90078+

>mRNA_P-littoralis_Contig623.46.1 ID=mRNA_P-littoralis_Contig623.46.1|Name=mRNA_P-littoralis_Contig623.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig623:83623..90078+ (Pylaiella littoralis U1_48)
ATGGCGACCCGTGCCCAGTTCGAGAACTCAAACGAAATTGGCGTCTTCTC
CAAGCTCACCAACAGCTACGCGCTATGCTCCATCGGTGGCAGCGAGAACT
TCTACAGCGTGTTCGAGTCTGAGCTGGCGGATCACATCCCGGTCGTTCAC
ACCAGCATCGCGGGGTGCCGATTTGTGGGGCGTGTGTGCGTGGGCAACAA
ACGAGGGCTGCTGGTTCCCAACACAACGACAGATCAAGAGCTGCAGCACC
TCCGAAATGCCTTGCCGGACACGGTGGTGATCCAGAGGGTGGAGGAACGC
CTGTCCGCCCTGGGCAACTGTATCGTCACCAACGACCACGTCGCACTGGT
GCACACAGACCTCGACAGGGAAACCGAGGACCTGGTGGCGGATGTGCTGG
GTGTGGAGGTGTTCAGGCAAACGATCGCCGGTAACGCTTTGGTGGGGAGC
TACGCGGTGATCACCAACCAGGGGGGAATGGTCCACCCGCGGACATCCAT
CGAGGACATCGAGGAGCTCTCGAGCCTGCTTCAGATTCCGTTGGTGGCGG
GAACGGTAAACCGGGGGTCCGATGTGCTCGGAGCGGGTGTCGTAGCGAAC
GACTGGACCGCGTTTTGCGGGCTGGACACAACATCTACGGAGATTAGCGT
CGTAGAATCCATCTTCAAGCTCAACGAGCAGGGGCCTTCCAACATCGTCA
ACAGTATGCGGAGCTCTCTCATCGACTCGTTGACATGA
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