mRNA_P-littoralis_Contig623.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig623.34.1
Unique NamemRNA_P-littoralis_Contig623.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Match: A0A6H5KJ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ87_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.170e-10
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:   81 MSCVCRHAARTVFKSVRTTTMIAPAMIAKGPSSFVTTTAVKGLSY-ESGGQGQSPWSGHG---GGGDMMGGSDRPPRRVVERRRGDW 329
            M   CR+AAR V    R   +IAPA +    +      AV+ LSY + GGQG +PWSGHG   GG  +MGGSDRP RRVVERR GDW
Sbjct:    1 MMSACRNAARAVLCVRRP--LIAPARLVVPATPGA---AVRALSYAQDGGQGGAPWSGHGDDGGGHGVMGGSDRPRRRVVERRPGDW 82
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BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Match: A0A7S2STL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STL9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.990e-7
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  309 ERRRGDWDCPECGNHVFASRSVCPRCQEPKPDGMDSYG 422
            +RR GDWDCP CG  VFAS+S C +CQ P+PDG   YG
Sbjct:   37 DRRAGDWDCPSCGALVFASKSNCYKCQTPRPDGGGGYG 74
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BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Match: A0A6H5JRL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.250e-7
Identity = 27/42 (64.29%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  312 RRRGDWDCPECGNHVFASRSVCPRCQEPKPDGMDSYGGRRER 437
            RR GDWDCP CGNH FASR VC RC  P+P+G    GG  ER
Sbjct:  130 RRPGDWDCPSCGNHCFASRVVCNRCPTPRPEGA---GGGFER 168
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BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Match: A0A7S2SUK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUK3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.520e-7
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 3 
Query:  312 RRRGDWDCPECGNHVFASRSVCPRCQEPKPDGMDSY 419
            RR GDWDCP CG HVFAS+S C +C  P+PDG   Y
Sbjct:   92 RRPGDWDCPSCGAHVFASKSNCFKCGTPRPDGGGGY 127
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BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Match: A0A812T5M7_SYMPI (CysS protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812T5M7_SYMPI)

HSP 1 Score: 57.8 bits (138), Expect = 3.130e-6
Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 3 
Query:  306 VERRRGDWDCPECGNHVFASRSVCPRCQEPKPDGMDSYGGRR 431
            +ERR GDW CP CG  VFA++  C  C EP+P G   Y G R
Sbjct:   81 IERREGDWSCPNCGKLVFAAKDTCFSCGEPRPSGDRGYNGGR 122
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BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Match: A0A7S2PN73_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PN73_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 1.070e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:  306 VERRRGDWDCPECGNHVFASRSVCPRCQEPKP 401
            VER+ GDWDCPECG  VFAS++ C +C  PKP
Sbjct:   15 VERKAGDWDCPECGAMVFASKNACFKCGAPKP 46
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BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Match: A0A7S1T185_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T185_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.510e-5
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 3 
Query:  315 RRGDWDCPECGNHVFASRSVCPRCQEPKPDGMDSYGGRRE 434
            R GDW CP C  HVFA ++ C  C EPKP+G ++ G R E
Sbjct:   50 RAGDWLCPSCNAHVFAGKTNCFHCDEPKPEGAEAVGFRGE 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KJ87_9PHAE8.170e-1052.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2STL9_9STRA1.990e-763.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JRL5_9PHAE3.250e-764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SUK3_9STRA9.520e-763.89Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A812T5M7_SYMPI3.130e-652.38CysS protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A7S2PN73_9DINO1.070e-565.63Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S1T185_9CHLO1.510e-552.50Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig623contigP-littoralis_Contig623:48614..53021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIQ0
PFAMsRRM_1,zf-RanBP
Model size1445
Max annot lvl2759|Eukaryota
KEGG koko:K13098,ko:K14651,ko:K18270
KEGG Pathwayko03022,ko05202,map03022,map05202
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons3
Evalue1.87e-07
EggNOG OGsKOG1995@1|root,KOG1995@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-26_000810.1
DescriptionRNA binding
Cds size555
COG categoryJ
BRITEko00000,ko00001,ko03019,ko03021,ko03041,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791300.0292597-UTR-P-littoralis_Contig623:48613..486871680791300.0292597-UTR-P-littoralis_Contig623:48613..48687Pylaiella littoralis U1_48UTRP-littoralis_Contig623 48614..48687 +
1680791300.0737407-UTR-P-littoralis_Contig623:52168..524611680791300.0737407-UTR-P-littoralis_Contig623:52168..52461Pylaiella littoralis U1_48UTRP-littoralis_Contig623 52169..52461 +
1680791300.0836377-UTR-P-littoralis_Contig623:52498..530211680791300.0836377-UTR-P-littoralis_Contig623:52498..53021Pylaiella littoralis U1_48UTRP-littoralis_Contig623 52499..53021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791300.044993-CDS-P-littoralis_Contig623:48687..489411680791300.044993-CDS-P-littoralis_Contig623:48687..48941Pylaiella littoralis U1_48CDSP-littoralis_Contig623 48688..48941 +
1680791300.0587506-CDS-P-littoralis_Contig623:51867..521681680791300.0587506-CDS-P-littoralis_Contig623:51867..52168Pylaiella littoralis U1_48CDSP-littoralis_Contig623 51868..52168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig623.34.1prot_P-littoralis_Contig623.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig623 48688..52168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig623.34.1

>prot_P-littoralis_Contig623.34.1 ID=prot_P-littoralis_Contig623.34.1|Name=mRNA_P-littoralis_Contig623.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MAMSCVCRHAARTVFKSVRTTTMIAPAMIAKGPSSFVTTTAVKGLSYESG
GQGQSPWSGHGGGGDMMGGSDRPPRRVVERRRGDWDCPECGNHVFASRSV
CPRCQEPKPDGMDSYGGRRERERVQKRAGDWECPSCQFHNFASRQECYKC
QVVKPHDAKGFDDPYGGGRGGRERWQGGGGFNNY*
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mRNA from alignment at P-littoralis_Contig623:48614..53021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig623.34.1 ID=mRNA_P-littoralis_Contig623.34.1|Name=mRNA_P-littoralis_Contig623.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4408bp|location=Sequence derived from alignment at P-littoralis_Contig623:48614..53021+ (Pylaiella littoralis U1_48)
GAGCACACCCAAGTTCACTTGCTGTGAAACTTCACCGCCAGGAAACAGCA
GCAGCAACCAACAACCAGTGGGCCATGGCGATGTCTTGCGTTTGCAGGCA
TGCCGCGAGGACGGTGTTTAAGAGCGTAAGAACAACAACAATGATCGCCC
CTGCAATGATCGCGAAGGGGCCTTCTTCCTTTGTCACTACTACTGCTGTC
AAAGGTCTGAGCTACGAGTCAGGAGGGCAAGGACAGTCGCCTTGGAGCGG
ACACGGAGGGGGCGGGGACATGATGGGAGGGAGCGACCGTCCTCCCCGTA
GAGTCGTAGAGAGGAGGCGTGGGGACTGGTGAGTCGATGATGTGATGCAC
TTATCGGGTGCTCTACTGAAATGTTGTGCACACATGTTTGAGAACTGACT
GGTTCACAGCCGACCGCCCCTTACCGGTAAACCACTCTTTCAGCGTGTCA
CCGTCAACCTCCCCGTGCGCATCCCTCCCAGCGCCACACCCCAACCTGCA
CTTGTCGAGCAGCAACTGTTGGTTCGTGTTTCATTCCTGAACATTGCTGA
GTCGCGGCTGCTGTTCACCACCTACATCGGCTGCTGCACAGCTCCTGCTG
TCCGTACTGTTGCTCTTGTCTTGCGGTGCTCGTTCAGCTACAGCGGAGCG
GAGTTGTAAAAAATCACGAGCAACTGCCGTCGCGTCTGGATAAAAGCTCG
ACCAGAGCCGCCCATAATAACCCAACAAACACACACGGAGTATGATACCC
GGGACAAGTCCCCACAACCGCAGCAAACTGCAGCAAGGGTGCACGTTCGG
ATTTTGCCTGGATTTTTCAAAAGAACTTACTACCTCCGGCACTTTTTGCT
GCTACAACTTTTTTGCGGGACTACCAACTACCAACGCCCCAAGGGTTCAA
ACTGGCAGGTAGCCCCTATTTGCACCCCCCAGGCGCATAATGTTTCTGCA
CCCCTCGTAAAGCCCTAACCCACAGTTTTAGATTCTTTCGACCAACGCCC
CTGCTCAATAGTAGACCTCTCCCGACCAAATCCGACCCTCACCTTTTCTT
ATACGACCGATCCGAGTCCGGGAGAAGCCTTTGCGCGCTTTCGGTTGGAT
GAACATGCGTTGGTCGGAAAACACGAACGCGGCGTTATTTTGACCAATCA
GACGGTAGGGGCTGCAGAAACGTTGTTAGTATGCACCTGGCAGGTGCAGA
AAAGGGGGTACCAAAGAATCACCACACGAGGGAGGCCATGCGCACAGCTC
ACTGGGGATGACACTTCGGTTGTTGTCGTGGCATTTGTTAAGAGAATTAT
TAGCTTCAATCCTGCCCTCGACTCACGTATGCCCCTGGCATCGTATGACA
CGACAAGAACGCCACTGTCTGTTCTAGCAGCGCTAAACGTCAATTCCAAG
GGACCTGGGCATCACTCTTTGACATCATATATTTCCTGGAAAGAAACGTA
TTATCATCTTCCCCTCACTACCCTCACCAAACCACCTGCCACGATGACAT
CTTGTCCCACCGAAACGTCTATCCCGAAAAAAATCCGATCAACTTCGGAA
AGTCCATCATCACGGAACGATCAAATTTAAAAAGTTTGTCCGCAAGAGAT
CTCTACGAAGCGCGATCAGCTTTAGAAAGTCTGTCAGCAACAGATCCAAT
AAGGGACTATGCTTCATCCGCGAGGGCATGAAAGTCGTCGAGGAAAAAAT
CTCCAGCTAGTCGAACTTGGAAAAACACAGCCACGCCCACCTAGCAGTGC
TCGACTCCACCCCTGTACTCCTTGTGCAAACCAATCCACATGAACGCCAC
TTTGCCATCTACAGCACGTGGCTTTAGAAACACCCAGGAGGGGCCAGCAG
TGACGATATCGCACCACGGCAAGTCTTTTAGCTCTCTTTGCTGGAGGTCG
CTCTATGAATGGTCATTGCGGGCCGGCCTCTCGTGGTTCTCTGCAGCCAT
ATGTTCGTGTGAAAAGTGTGCGGTTAACAACTGCTGCGTGGGTTTGGCTG
TCTTGTCGAACTCCAGTTGAAGTAGAAAGAAGGCAGCGAGCTCAAGCTAG
GTATTGCCAATGAGTTACTCCCGGATACGGTGAACCTTCGTGTGACCACG
GGATCCTTATGTCTTGTCTTCTTTTCCCCACCGATATCGCGGAGGTACAC
CATACGGGATTTGAAGTCATTATTGGCAAGTTCGAGCTCAACAATAAGAT
AACAGGGAATGATCGCCGGGGGGCGGAGATGGGTGCTTGACGCACCGAGT
CGACCAGCAACCTAGACCTGCCACACGTGCCTGTGCACATGGACACCCAA
CTGGTAAAATTGCAAAACTCACGAGCATCGTTCTGGAGTACAACCGTTTG
CTTACATTTCTGGCGGTTGCTCTTTCTCCGGCCGACGTTGTTTCTACGAT
TGTGGCTTTTTTTGTTTGCTCTCTCTGCGAGGTGAGATGCAGCAAGGAGC
AAATAGATCCACGCGTGCACACACAAAGAAAAACGCATACGAGTACGACA
CACAAGTACACACCCACGCACCCGCCCACGCACACACTTAACACAAAAAG
CCGGTGTGCGCTCTCTCTGAATAGTTGCCGAAAACTGTTCTGGCGCGCAG
ATTTAGTTTCACAGCGCTTGGGTCTGATGTAATAACGTGGTTGCAGTTAA
GGTCGCGGCGGGAGAGCGGATCAAATGATGTCCAAAATTATCTACATTGT
CGGACTGCTTGACTGAGGACACAAACAAATCGCCTTTACTGGTGACTGAT
GTTTCGCTCGACCCACACACGTCGCCTTTTTAGTCTATACTTCGAAGTAA
TATTTTATATTTAGAATCCAAGCAACCCGCGAGCGTGGGACCGATGACAA
GGTTGAGGTTTCCTTCTTTTCACGCTTAGTTTTAACCCGGTAAGGCGACC
GTTTGGTTTGTCTCCTTGTCACGCCCTGTGAGTCGATAGCGATGCCGTAC
CTCGAACCGCTGGATTGCGCCAACCCCTTCCCCCTTCACCTGCCTCTCGA
AGAGAGGGGACACGAAACGGGAACGTGAATGAATATCGTACCCCCCCCCT
ACACTCTCAACCCCTGGCTACGTTGTGCCCGTTCCGGAGAAAGGCGACCC
CCTTTTCCCGATGTCGCTGCAGTGATTTGCTGGGTTTCTTTTGTAATGGA
ATTTGTGTTGCGCACCCTCTGAGCGGGTTAATACCACGCTCGTCCCCAGC
TCGACCAGCATGTATGGTACTTATCCCCCCCCCCCCCCCTCCCCAATCCT
TCAGGGACTGCCCGGAATGCGGTAACCACGTCTTCGCGTCGCGGAGCGTG
TGCCCAAGGTGCCAAGAGCCCAAGCCCGACGGCATGGACAGTTACGGCGG
TCGGAGGGAGAGGGAGCGCGTGCAGAAGAGAGCCGGGGACTGGGAGTGCC
CCTCGTGTCAGTTTCATAATTTCGCTAGCCGCCAGGAGTGCTACAAGTGT
CAGGTGGTCAAACCGCACGACGCCAAAGGTTTCGATGACCCGTATGGAGG
CGGTCGTGGTGGACGGGAACGGTGGCAGGGAGGTGGTGGCTTCAACAATT
ACTGATGGATTGATGCCTGCTGCTACAGTAGGCTTGAGAGGGAGGATGTC
AGAGCCGATGAACAACAAATATATTAGGGTGTGGTGGATGATGGATGGCA
GTAGTCTACAGCAATTGGGGCAGGGTATCACCGCGGGGATGTGGTGGTTG
ATTGTATTGTTGCGATTGCGTCGACGAATACGATGGAATCGTCGGGTGGC
AGTGGTCCATCCCGTGTACAGAAACTATTTTCGTTCGGCGAAGGTGGTTA
TTGCACGGGGGTGGCACTAGACTTATCCATCCGCCTTCGCCTGGATGGGC
GGCAAGCCGGTAGCAGACGGTTTCCACGTTCCAAGTATTGTAGTTGGCCC
CCCCCCCCCCCCGTATTAGCCCGCCTGTATTGCGAAGTCCTAAAAGAACA
TGATTTATCCCATGGTGCGAGTATCACACGGCGTTGGTTTTTTATTATCG
AGAGAAGAAGGAGTCAAAAGGAGTCAAGAGAAGCAGGAATATTTTGAAGT
AAAGCAACGTGATCGTTTCTATGTCCACGGAGGTAGGACGCACGTGCTTT
TCAAAATCGACAGGACGATGTGCGAGATCGAAAGGTGTGAAGCAGTAGAC
ACGTCTCTTGTCGCTCTTTTTTGCTGCCCTTGGCTCAACATCATCGCCAC
CTTCGGCAGAGCTGGTTGCTCTGCCATCACCCTCGGGATCTGCGCATGCG
CTGTCTGGCGTACGTCAGGGACTCGGGTGGAAGAAAGCCAGACTTTCTTG
CCCTCGGTGCGGATGAGATACAAACCTGACCGGCTCCATTGTTATCCCAA
AACAAGACTGCTTGTATACACAAGAAGTATATGGGTGAAGTTCGACTGCT
GTGTGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig623:48614..53021+

>mRNA_P-littoralis_Contig623.34.1 ID=mRNA_P-littoralis_Contig623.34.1|Name=mRNA_P-littoralis_Contig623.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig623:48614..53021+ (Pylaiella littoralis U1_48)
ATGGCGATGTCTTGCGTTTGCAGGCATGCCGCGAGGACGGTGTTTAAGAG
CGTAAGAACAACAACAATGATCGCCCCTGCAATGATCGCGAAGGGGCCTT
CTTCCTTTGTCACTACTACTGCTGTCAAAGGTCTGAGCTACGAGTCAGGA
GGGCAAGGACAGTCGCCTTGGAGCGGACACGGAGGGGGCGGGGACATGAT
GGGAGGGAGCGACCGTCCTCCCCGTAGAGTCGTAGAGAGGAGGCGTGGGG
ACTGGGACTGCCCGGAATGCGGTAACCACGTCTTCGCGTCGCGGAGCGTG
TGCCCAAGGTGCCAAGAGCCCAAGCCCGACGGCATGGACAGTTACGGCGG
TCGGAGGGAGAGGGAGCGCGTGCAGAAGAGAGCCGGGGACTGGGAGTGCC
CCTCGTGTCAGTTTCATAATTTCGCTAGCCGCCAGGAGTGCTACAAGTGT
CAGGTGGTCAAACCGCACGACGCCAAAGGTTTCGATGACCCGTATGGAGG
CGGTCGTGGTGGACGGGAACGGTGGCAGGGAGGTGGTGGCTTCAACAATT
ACTGA
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