mRNA_P-littoralis_Contig623.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig623.3.1
Unique NamemRNA_P-littoralis_Contig623.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig623contigP-littoralis_Contig623:4280..5356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791299.223642-CDS-P-littoralis_Contig623:4279..43681680791299.223642-CDS-P-littoralis_Contig623:4279..4368Pylaiella littoralis U1_48CDSP-littoralis_Contig623 4280..4368 +
1680791299.2465267-CDS-P-littoralis_Contig623:5091..53561680791299.2465267-CDS-P-littoralis_Contig623:5091..5356Pylaiella littoralis U1_48CDSP-littoralis_Contig623 5092..5356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig623.3.1prot_P-littoralis_Contig623.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig623 4280..5356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig623.3.1

>prot_P-littoralis_Contig623.3.1 ID=prot_P-littoralis_Contig623.3.1|Name=mRNA_P-littoralis_Contig623.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MGCPSEVPKANCPGGSMAAPEGEYLRNVLRRHTSSCRENVLGPGPDGEET
VDVLMRQVSPVLAEAPSSKVATTSSGRRQRCPVRDMVVPEPAVTPSRSSS
RSSGRANKPARFSDAADD
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mRNA from alignment at P-littoralis_Contig623:4280..5356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig623.3.1 ID=mRNA_P-littoralis_Contig623.3.1|Name=mRNA_P-littoralis_Contig623.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1077bp|location=Sequence derived from alignment at P-littoralis_Contig623:4280..5356+ (Pylaiella littoralis U1_48)
ATGGGCTGCCCCTCCGAGGTCCCCAAGGCGAACTGTCCCGGCGGAAGCAT
GGCGGCCCCTGAAGGCGAATATCTTCGTAATGTACTCAGGCAAGTCCCCA
GTGAAGGTTTGGCTGGCGTGGGTCGAGAACGGGTGTCGACGTGTTCTTGC
TCCGACCACCTCCTGCGAGTCCTCACGGGGTATCAGATAAGAGGGGTCAT
ATCGCAGTTCCAACCTCACAGAGAGCTGTCACCGATAATGGGTGCCTTAG
ATCGACCGCCGTGGGATTTGAAGTGGATCGCTCGTCTACGATTTCGCAAT
CGGTTGCGTACAAAGCGAATCCGAAGCAAAAACCTCTTATTGTAGCAGAT
TTTTTTAAGGGCTTCCGGGGTGTTGCAGCGAGGGACATGAAGCTGTGGCG
ACTGGCAAGGACCACGCTCACAACCCTCAGTCAACCTGCTAGAGTCACCG
ATCCCGTGGGTCTGATGTATAAGAAGGAAACTGCGCAGAGAGTAGCGGTA
TACATGCACCACAGCCGTAGAAATCGGTTTTTGGCTCTACTGCTGCACTG
TCGTATGGTGGGCGCGGCGCCTATTACCCCGAATCCAACTGCAGCAGGAG
CAACGTCGTGAATCGTGGGCATTGAACTTCGGGCGCAAAATCGCAAACGA
GCGATAGCTAGCGGTGGTTTAGGAGGTTTGTATAAAGCTATCATTATTCG
CCACAGACAGCGCATTTGAGAAAAATCCAATACCGCAAACCTAGAAATGT
GCCAATTTTCTACTTTTTGTCCACGTTTCTATCCACCTTTCTATTGAAAT
TAAAATGCTCAGGCGACACACATCGAGCTGTCGAGAGAATGTGTTGGGTC
CGGGTCCCGATGGCGAGGAAACCGTAGATGTTTTGATGAGACAAGTAAGC
CCGGTGCTCGCCGAGGCACCCAGCTCAAAAGTCGCGACTACGTCATCAGG
CAGGAGGCAACGTTGTCCAGTACGCGACATGGTTGTTCCAGAGCCCGCGG
TCACGCCATCGAGGTCCAGCTCCAGGTCCAGTGGCAGAGCGAATAAACCG
GCAAGGTTCTCGGATGCGGCAGACGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig623:4280..5356+

>mRNA_P-littoralis_Contig623.3.1 ID=mRNA_P-littoralis_Contig623.3.1|Name=mRNA_P-littoralis_Contig623.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig623:4280..5356+ (Pylaiella littoralis U1_48)
ATGGGCTGCCCCTCCGAGGTCCCCAAGGCGAACTGTCCCGGCGGAAGCAT
GGCGGCCCCTGAAGGCGAATATCTTCGTAATGTACTCAGGCGACACACAT
CGAGCTGTCGAGAGAATGTGTTGGGTCCGGGTCCCGATGGCGAGGAAACC
GTAGATGTTTTGATGAGACAAGTAAGCCCGGTGCTCGCCGAGGCACCCAG
CTCAAAAGTCGCGACTACGTCATCAGGCAGGAGGCAACGTTGTCCAGTAC
GCGACATGGTTGTTCCAGAGCCCGCGGTCACGCCATCGAGGTCCAGCTCC
AGGTCCAGTGGCAGAGCGAATAAACCGGCAAGGTTCTCGGATGCGGCAGA
CGAT
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