mRNA_P-littoralis_Contig620.61.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.61.2
Unique NamemRNA_P-littoralis_Contig620.61.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig620.61.2 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.490e-18
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRYGFVGQYINDFFVLHHSVSAPDQDIRCLD 381
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q + +   +    S     IR  D
Sbjct:   84 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPD 211
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BLAST of mRNA_P-littoralis_Contig620.61.2 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.860e-18
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRYGFVGQYINDFFVLHHSVSAPDQDIRCLD 381
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q + +   +    S     IR  D
Sbjct:  412 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPD 539
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.61.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE2.490e-1840.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.860e-1840.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:170163..170917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size398
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791297.7904246-CDS-P-littoralis_Contig620:170162..1704451680791297.7904246-CDS-P-littoralis_Contig620:170162..170445Pylaiella littoralis U1_48CDSP-littoralis_Contig620 170163..170445 -
1680791297.801475-CDS-P-littoralis_Contig620:170804..1709171680791297.801475-CDS-P-littoralis_Contig620:170804..170917Pylaiella littoralis U1_48CDSP-littoralis_Contig620 170805..170917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.61.2prot_P-littoralis_Contig620.61.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 170163..170917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.61.2

>prot_P-littoralis_Contig620.61.2 ID=prot_P-littoralis_Contig620.61.2|Name=mRNA_P-littoralis_Contig620.61.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVL
RLYRALVEYFNRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRYG
FVGQYINDFFVLHHSVSAPDQDIRCLDPWDGP
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mRNA from alignment at P-littoralis_Contig620:170163..170917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.61.2 ID=mRNA_P-littoralis_Contig620.61.2|Name=mRNA_P-littoralis_Contig620.61.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=755bp|location=Sequence derived from alignment at P-littoralis_Contig620:170163..170917- (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGAGAGGTGTGCGCGAATGATGTGCGCAGGTTGTAT
TCGGGATTTATTTTGTGTGTTCGTGTCGTCTCGGACAACAGAAAGGTCGA
GGCGAGCGCCGCCGCCCGCCAAGTATGCAGCAACTTGCTTTCGCTTATGG
ATTATTACAAAATCGCCGTGAGTTGCCACGCCCTAAAGAAAAATTAAAAA
AATTGTAAAATGTCGTTCCTGTGGTGAACGAAGTTGGGAGCAAACGTTCC
GGGTCACTCGTTTAGACACGCAAACTGACGTGCCCTTCCGCCCCCCTCCC
CCGAAGCAAGCACTAACTCGTTTGCAAACGAAATTGCCTCCCATCACCCG
CCACGTTTTGAACGGTTCATAGGTGGGCTTCGCTGCATGCAATGCTCCAG
CGCGTGCTCAGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGG
GAGCGACCGTGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTGG
TGAGCGTCCTCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGGT
CGTTATGGGTTTGTCGGCCAGTACATCAACGACTTCTTCGTCCTGCACCA
CTCGGTCAGCGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGACG
GCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:170163..170917-

>mRNA_P-littoralis_Contig620.61.2 ID=mRNA_P-littoralis_Contig620.61.2|Name=mRNA_P-littoralis_Contig620.61.2|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig620:170163..170917- (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGGGCTTCGCTGCATGCAATGCTCCAGCGCGTGCTC
AGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGGAGCGACCG
TGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTGGTGAGCGTCC
TCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGGTCGTTATGGG
TTTGTCGGCCAGTACATCAACGACTTCTTCGTCCTGCACCACTCGGTCAG
CGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGACGGCCCC
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