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Homology
BLAST of mRNA_P-littoralis_Contig620.49.6 vs. uniprot
Match: A0A6H5LPM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPM1_9PHAE) HSP 1 Score: 191 bits (486), Expect = 3.450e-51 Identity = 145/280 (51.79%), Postives = 161/280 (57.50%), Query Frame = 2
Query: 1403 MTSSLEAFPECWQPLNWSRFEETLQALVDGQDNRTLNARVTYLDIALDCLVASRRHXXXXXXXXXXXXXXXXXXXXXVQAGRAAEPLLPPLFLGAGGDQDGRAALKRCSKWAAKVWAKRHAGTMASIARPAGAHGGGNKDTSSIESNVTNARVCMAVSRAMGEALEAFRTAGGXXXXXXXXXSALQLEGCQLVAVELEYHGEVVPSAAGSESAGAQSAKEEAEAREATAKCLAGLVRSLGGRPFCPTLAGVLLQNMPSQKTSEAG--VEVERLKALLRRQ 2236
MTSSLEAFP CWQPLNWSRF+E LQ LV G+D L AR YL I LD L RR XXXXXXXXXXXXX PL LGAGGD+DGR ALK+C+KWAA+VWA RHAG A A GG K + + N RVCM SRA+ EALEAFR A G +LEGC+L AV LE SES G + A A+ LAGL+RSL GR FC LA VLL+NMP Q VEVE+LKALLRRQ
Sbjct: 1 MTSSLEAFPRCWQPLNWSRFDEALQDLVVGKDPLELGARAAYLGIVLDSLETFRRQRQGAVGXXXXXXXXXXXXX--------------PLLLGAGGDRDGRTALKQCAKWAARVWAHRHAGVAAGAA-------GGRK----YDEEIVNTRVCMTASRALAEALEAFRMAAG------------ELEGCRLAAVILESE---------SESNGGKEA----------ARGLAGLMRSLSGRTFCSALARVLLENMPEQXXXXXXXVVEVEKLKALLRRQ 224
BLAST of mRNA_P-littoralis_Contig620.49.6 vs. uniprot
Match: D8LSY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY7_ECTSI) HSP 1 Score: 122 bits (306), Expect = 2.530e-24 Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 2
Query: 1028 TKASVKKQQAALEKKAAGERALRTCPWCRVQFYLTETEDEADRHLAACALK--VSTSAVVAN--STLMPPSLSSSLMHGLMDDELSSLVSTVAEFAARRVRPTVAFCDRTMQTIFSSK 1369
TKA+ +KQQAAL+K+AA ERAL CP+C +FY+TET+D+ DRHL++C K +TSA VA+ ST M PSLSSSL+ GL ++L SLV +VAEF AR VRPT FCDR MQ + +SK
Sbjct: 1136 TKAAERKQQAALQKEAADERALPKCPFCGSEFYVTETQDQIDRHLSSCGAKKAAATSASVADRSSTPMAPSLSSSLVIGLKGEDLGSLVGSVAEFGARGVRPTGTFCDRAMQALCNSK 1253
BLAST of mRNA_P-littoralis_Contig620.49.6 vs. uniprot
Match: D8LSY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY8_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 2.220e-15 Identity = 62/126 (49.21%), Postives = 70/126 (55.56%), Query Frame = 2
Query: 1865 MAVSRAMGEALEAFRTAGGXXXXXXXXXSALQLEGCQLVAVELEYHGEVVPSAAGSESAGAQSAKEEAEAREATAKCLAGLVRSLGGRPFCPTLAGVLLQNMPSQKTSEAG--VEVERLKALLRRQ 2236
M SRA+ EALEAF A G +LEGC+L AV LE SES G + A A+ LAGL+RSL GRPFC LAGVLL+NMP Q G VEVE+LKALLRRQ
Sbjct: 1 MTASRALAEALEAFGVAAG------------ELEGCRLAAVILESE---------SESNGGKEA----------ARGLAGLMRSLSGRPFCSALAGVLLENMPEQHQGGGGGVVEVEKLKALLRRQ 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3578 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Cds size | 1182 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791297.2892132-UTR-P-littoralis_Contig620:125348..126243 | 1680791297.2892132-UTR-P-littoralis_Contig620:125348..126243 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig620 125349..126243 + |
| 1680791297.3015978-UTR-P-littoralis_Contig620:126369..126507 | 1680791297.3015978-UTR-P-littoralis_Contig620:126369..126507 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig620 126370..126507 + |
| 1680791297.3112028-UTR-P-littoralis_Contig620:128044..128227 | 1680791297.3112028-UTR-P-littoralis_Contig620:128044..128227 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig620 128045..128227 + |
| 1680791297.37106-UTR-P-littoralis_Contig620:129729..130909 | 1680791297.37106-UTR-P-littoralis_Contig620:129729..130909 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig620 129730..130909 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791297.323917-CDS-P-littoralis_Contig620:128227..128379 | 1680791297.323917-CDS-P-littoralis_Contig620:128227..128379 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig620 128228..128379 + |
| 1680791297.3352256-CDS-P-littoralis_Contig620:128616..129603 | 1680791297.3352256-CDS-P-littoralis_Contig620:128616..129603 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig620 128617..129603 + |
| 1680791297.3560011-CDS-P-littoralis_Contig620:129686..129729 | 1680791297.3560011-CDS-P-littoralis_Contig620:129686..129729 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig620 129687..129729 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig620.49.6 >prot_P-littoralis_Contig620.49.6 ID=prot_P-littoralis_Contig620.49.6|Name=mRNA_P-littoralis_Contig620.49.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=394bp
MPPSLSSSLMHGLMDDELSSLVSTVAEFAARRVRPTVAFCDRTMQTIFSS KCRFQTEQLRRIMTSSLEAFPECWQPLNWSRFEETLQALVDGQDNRTLNA RVTYLDIALDCLVASRRHQEQQQRPSGNSSSSSSNSGGGVQAGRAAEPLL PPLFLGAGGDQDGRAALKRCSKWAAKVWAKRHAGTMASIARPAGAHGGGN KDTSSIESNVTNARVCMAVSRAMGEALEAFRTAGGGGGGGNGSSSALQLE GCQLVAVELEYHGEVVPSAAGSESAGAQSAKEEAEAREATAKCLAGLVRS LGGRPFCPTLAGVLLQNMPSQKTSEAGVEVERLKALLRRQQTWGMCSGGR GGAGEKGGRRDGAGGGGRGSRAGAKGVQSGSLPRVCVVLVGYQ* back to topmRNA from alignment at P-littoralis_Contig620:125349..130909+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig620.49.6 ID=mRNA_P-littoralis_Contig620.49.6|Name=mRNA_P-littoralis_Contig620.49.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=5561bp|location=Sequence derived from alignment at P-littoralis_Contig620:125349..130909+ (Pylaiella littoralis U1_48) GTTCGGAACTTTTTCTCAGCTTTTTAAATTTGATCGAAGCCCCCGTGTTT
TTTTTTATTTCTATGACAGCCGTTCATGCGAGTGAGTACTTTGTGCTCCA
GTCTTTGGTAGCGTGCTTCGTGCGGTTACAGTACCCGTTTTAGATGGGCC
CGGCACGGAATAGGTGTCGTTCGTCCTTTGTACCAGTTTCGCACGTGGTT
GTTTTTTCGCACATTTGCTCATCACGTAGAGGTGGCCCGTGGTCACAATC
TAGGTGGGTAGAAAAAAGATTGCCAGAAGGACAAATCAAACGCATACACG
CACACACAGGGGACACGGGGCCAGAAGGACGAAACAAACGCATACACAGG
GGGGCACAGGGCCAGAAGGACGAATCAAACCCATACACAGGGGGCACAGG
GGACACAGGGCCAGAAGGACGAAACAAACGCATACACAGGGGGCACAGGG
CCAGAAGGACAAATCAAACGCATACACAGGAGGCACAGGGGGCACAGGGC
CAGAAGGACGAAGCAAACGCATACACAGGGGGGCACAGGGCCAGAAGGAC
ACAACAAATGCATACACGCACACACAGGGGGCACCCCCAGGGGTGGTGTC
CTCTACCTGTGGTGAGTGAACGTATGCATCATCGTCACCGGTTTCGGCGG
GCCTCGGGCGCCATGTCTGACCCCATCCACCCACACCTCCCGCGCCGTCC
TGTTCCGTACATGCCTGATCCGGTACGTTTACATTGCCGGCCCCATGGCG
ATTTTCTTTGCTTTTTCTCGGTGAATACTACGGATAAATTGATGTGTTGA
TTTGTTCTTTGTAGTCGAGTAGATCGTTGCCGAAGGACAGCAAGGACAAG
AGCGTAGGGCCGAAGGGCGCCACCAAAGCTGGTACCAAGTCTGGTGCAGC
GGCGGCGGCGGCGGCGGCGGCGGTGGGTCTCAAACAGATCGGCAAGAGCG
GCAGCACTCAAAAGACCGCGGCGCCAAAGCGCAAGGCCTCAGTGAAGGGC
GCCGTTGGTGGGGGCGTCGAGCGCCCTGCCGCGCCGGCACCATGCCCTGT
GCCTGTTCCGGCCGCAGAGCTCGATGGCGGCAAGAGCAAGGTATCGGCGG
AGGAGCAGGAGCAGGAGGGGAGCGAGAAAAGCAAGACGGGTTCCACAAAC
CAGACCAAGGTTCGTCATTTTCTAGTACTTCGCGTGTGTTCTTTGGCTGC
GTGTCGTGTTGTCGTTTCCTTGGTACCTCCTGGCCACGAAAGCTCTCGAA
GGGTCGAATAGAACAAGGTTTTGCGTGTTGATACTTCGTGTGTTATTGTC
CGCTTTTCAGCGGGTGAGGTCAACCCTTGATAAATTTGGTCTTGAATCTC
ATTTGGCGAGCTGGGCCTAGCCGCCACCCAGCTGACAACGCGACTAAGTG
CCTGTTGTGCCACCAGACGGTCTCGCCAAGATTTGGGCTGTCTGGGTTGT
CATGTCTCCAGTTAGCTCCAGCTGGCCTTGGTGTCTCAACCACCCTGGCC
CGGCTCGAAATTAGACACGACCGCACAGCTCGAAACAATGAGGTTCCAAT
TAAATGCCTAAGAAGTAACAGTCGTTTCAAACTCCGCCGCATTATCATTT
AATATTCAACATCAAATGTCATTGTTTGAGAAAAGAGCGAACCTGACGAC
CATGTCCTCCGAAGGACAGCCAGCATCCCAAACATCCGCCCAAACAACCG
CAAGAAAGCCTGGTAATATCAAGCGATACCAGACTGTCTCACCAACTCCG
AGGGTGTGATGTCTCAAGCACCCTGGCCCATCTCGAAATTAGACGACATA
GCGAGCTCGAATTTTATGTCCGGCGGGTTGATGGTCGTCTCGAATTCTGC
CGCATAAAGTCAGATTCAGCATCCAGGCCCAGCTCCAAACGAGACTCGAC
TCACCACGCGTGTGTAGCTTGATGTGGTTGATTGACAGCATCAGCAAGCC
TACGTTACATTTTTACAATAGCGGCATGGTCTTCGACACCTAGCGACCAC
CTCCTCCGCAGGACAGGCAGCGATAGCGACCCGAACATCCCCAAAAATCT
TAAGCGATCCCTAATTGTCTTGTTTTACAAACGGTATGTTCTTCTGCATC
TCTCAAAAACAGACAGCAACAGCGAACGCCTCTAAGGACAAGCGTGACCA
AACCAGCCCTCGAGCCATCAAGGCATTGTGCCATCAAGGCGATTGTGCCA
TCGAGGCGATTGTGCCATCAAGGCAAATATATTGGCATCGTCGCATTTCG
ACCTACTGTGTGTAGCTGGGGAAGAGAGACTCCTAGCCCGAACCAGGGTC
CGGGTCCATTATTCTTAAATGATGCGTGGTGTGATGAGTCGGCGAAAATC
TTGAAATAGTATATCTCATATCATAGTCGCCGTGTCTTCTCCCTATTTAA
TGCATCAACTCAACGTTTCCTTCGAAATTTGTAGCCCGCGCCGGCCGACC
TCGATCCCCGGCAGGTTGTAGTTCTCGCCCGCTGCTTGGACCCTGGAGAC
AAGTGATGATGGTTGGCGAAAGTAGACTAATTTAATACGCATACGTCTCT
CGCACTGCAAATAACATAGAAGCACATGTTATTCTTTCAAATGACTGACG
CGACACCCCTCCCGCCCCTCGCCCCGCTCCCTTCACTTCGTGAAACTATC
TGCTGCTCATCCATTTATTACATGCAAATTACATTGATTGATGCAGGCAT
CGGTAAAGAAGCAACAGGCGGCTCTCGAGAAAAAGGCGGCCGGAGAGCGC
GCGCTCCGAACCTGCCCGTGGTGTCGCGTCCAGTTCTACCTCACCGAGAC
GGAGGACGAGGCCGACCGGCACCTGGCCGCCTGCGCCCTCAAAGTATCAA
CCTCGGCTGTGGTCGCGAATAGCACGCTCATGCCGCCCTCGTTGTCGAGC
TCCCTGATGCATGGTCTAATGGACGATGAGCTGAGCAGTCTGGTTTCCAC
GGTGGCGGAGTTCGCGGCGAGGAGAGTTCGACCGACGGTGGCATTCTGCG
ACCGGACGATGCAGACGATTTTCAGCTCCAAGTAAGAGGAGGAGTCAGAA
GAGACGGTGGTGGTGATGGTGTCGGTTTGCTGCTCTGACCATGCTGCTTG
TTTGGTATCATGGCCCGCTGCATGATATGCATCGTGGGTCTTGTACATGT
TACTGGTCCACAACGATGGTTGATCTCAGTAGCTTATGTGGACAATCCCC
TACCCTCGTTGTTGAACCAAACGCTCCTTTGATCTTACGTTCATAATACA
TTCTCGGGTAACTACCAGGTGCCGATTCCAGACGGAACAACTTCGGCGGA
TAATGACGAGCTCCCTCGAGGCCTTCCCCGAGTGTTGGCAGCCCCTCAAC
TGGAGCCGCTTCGAGGAGACCCTCCAAGCGCTTGTCGACGGACAGGACAA
CCGCACCCTCAACGCACGGGTCACCTACCTCGACATCGCCCTCGACTGCC
TCGTGGCCTCCCGCCGTCACCAGGAGCAGCAACAACGCCCTTCAGGCAAC
AGCAGCAGCAGCAGCAGCAACTCCGGCGGCGGTGTGCAGGCGGGAAGGGC
GGCGGAGCCGCTGCTGCCGCCGCTGTTCCTCGGCGCCGGTGGGGACCAGG
ACGGCCGCGCCGCCCTCAAGCGGTGCTCCAAGTGGGCGGCGAAGGTGTGG
GCCAAGCGCCACGCGGGCACCATGGCGTCGATAGCCAGACCCGCCGGCGC
CCACGGGGGAGGCAACAAGGACACCAGCAGCATCGAGAGCAACGTAACGA
ATGCCCGCGTGTGCATGGCAGTGTCGCGGGCGATGGGAGAAGCACTGGAG
GCGTTCCGAACAGCGGGAGGGGGTGGTGGTGGTGGCAATGGTAGCAGTAG
CGCTCTGCAGCTGGAAGGATGTCAGCTTGTGGCGGTTGAACTGGAGTACC
ATGGCGAGGTGGTGCCGTCGGCGGCGGGGTCGGAGTCTGCGGGAGCGCAG
AGTGCGAAGGAAGAGGCCGAGGCAAGGGAAGCTACCGCGAAGTGCCTGGC
GGGGCTGGTGCGCTCGCTTGGGGGAAGGCCGTTCTGCCCGACGCTCGCTG
GCGTCTTACTACAGAACATGCCGTCCCAGAAGACGAGCGAGGCCGGCGTG
GAGGTTGAGCGGCTGAAGGCGTTGCTCCGGCGCCAGCAGACCTGGGGCAT
GTGTTCTGGTGGCCGTGGCGGTGCGGGCGAGAAAGGAGGGAGGAGAGATG
GCGCAGGCGGCGGTGGTCGTGGTTCCCGGGCCGGGGCGAAGGGTGTGCAG
AGCGGAAGTGCTATGCTGCTTGCGGACATGAACACGTAGGGCAAAAGGTC
CACCACATCTGTCATGAGAGGGGAAAATAGTTGATATTTTCGCTCCCCCG
TGTGTGTGTTGTTTTAGTGGGTTACCAGTGATCAACAGAAGTGCTGCAAG
GGCGCGTCGTGAGTCTCCTCTTGTTTTACGTGGAGTGTGAGTTAGATCCA
CCACCAGAGCACACTTTTAAAAGCTATCGGGTGTCTCGTACGTGTCTTGT
GAATCTTGTGTCTGGGCTCCGTTGTCGGAGGTGGGGGGGGTGGGGGTTGC
TTATTTCATGATCGGAGTACTCGGATTACGAGTCTGTCACCCTACGATGA
TTGCCCGCCGCCGTAAATCAGCCCTTGAAAAAATATCTGAATCTTTTTTG
GCGTCCATTTCCCCCAAAATTATTTTTGTTCATATGGGGTAGGGCGGAGG
ACGGCGGCGGCCGGCCTGGCCACGGTTACACCATGTCACTGTCTGATACG
AATTTGGTAGTAGAGAAGGGTGGATTTGAGATGAGTACGTTTCTGTGCTC
TGAAAATACAACCGTAGATATTTAACGTAAATCGTCGGCAACCTCCCTGT
TGGCCTTTCTTTCTCTTTTCTGGGCAGTTTTCGTTTGCACGCTTGCTTAC
AGTTGGACTGCCTGTCTGCGTCTCGATGTCTCAAGTAGCAAAAATGATAC
TTTTCGAAGTACGTGAAATTTAAACCCGCCGAAGACGAGGAGCTCTGATA
ACGCCTCGGTAAGATGTGCGTGTTGTTGACCGGGGGGTTCGTTCCTGCCG
TACCTGCGTGTCATGTGTACACAAATACGGCGTGCCCGGCCTTGCTTTGG
TGAGAGGTCTGTCCTGCCTCTGTTAGTGCTATCTTCCGCTTTCGCTTTCT
GTTCACCCACACGCTTGAACGCATCATTTTGACGCCGTCTTCGAGCTTAT
TTTTGCCTCGCTGGCTGCTCTTGTGAGCCGCTTTGTTGCAACCAAAAGCG
AGGACAACACTTTCTGCTTGTTGTTTTTTTTCAAATTGTTTTGGAGCGCA
TCTTTATTGCGCAGGGAAAAAAAATCAATCAAGCATGCAAATGAAGTACG
AAGTAATCTCAAGATGGTGCCGCAACTCAGCAACAGCCGTGCGGAGATTA
GCTCCGGGGGGCGCATGTCGCGGCCATGACACTTCAACCACATAACCCGC
GCCCCCGACCCCGCAGCTTTCGACCGCTCCTGCGGCGCCGCCACAACGCC
ATGTAGAGTAAGTTTGGACGGAGTAGGGACTGATACATGGAGGCGTTGCC
ATACAGGGATG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig620:125349..130909+ >mRNA_P-littoralis_Contig620.49.6 ID=mRNA_P-littoralis_Contig620.49.6|Name=mRNA_P-littoralis_Contig620.49.6|organism=Pylaiella littoralis U1_48|type=CDS|length=1182bp|location=Sequence derived from alignment at P-littoralis_Contig620:125349..130909+ (Pylaiella littoralis U1_48) ATGCCGCCCTCGTTGTCGAGCTCCCTGATGCATGGTCTAATGGACGATGA GCTGAGCAGTCTGGTTTCCACGGTGGCGGAGTTCGCGGCGAGGAGAGTTC GACCGACGGTGGCATTCTGCGACCGGACGATGCAGACGATTTTCAGCTCC AAGTGCCGATTCCAGACGGAACAACTTCGGCGGATAATGACGAGCTCCCT CGAGGCCTTCCCCGAGTGTTGGCAGCCCCTCAACTGGAGCCGCTTCGAGG AGACCCTCCAAGCGCTTGTCGACGGACAGGACAACCGCACCCTCAACGCA CGGGTCACCTACCTCGACATCGCCCTCGACTGCCTCGTGGCCTCCCGCCG TCACCAGGAGCAGCAACAACGCCCTTCAGGCAACAGCAGCAGCAGCAGCA GCAACTCCGGCGGCGGTGTGCAGGCGGGAAGGGCGGCGGAGCCGCTGCTG CCGCCGCTGTTCCTCGGCGCCGGTGGGGACCAGGACGGCCGCGCCGCCCT CAAGCGGTGCTCCAAGTGGGCGGCGAAGGTGTGGGCCAAGCGCCACGCGG GCACCATGGCGTCGATAGCCAGACCCGCCGGCGCCCACGGGGGAGGCAAC AAGGACACCAGCAGCATCGAGAGCAACGTAACGAATGCCCGCGTGTGCAT GGCAGTGTCGCGGGCGATGGGAGAAGCACTGGAGGCGTTCCGAACAGCGG GAGGGGGTGGTGGTGGTGGCAATGGTAGCAGTAGCGCTCTGCAGCTGGAA GGATGTCAGCTTGTGGCGGTTGAACTGGAGTACCATGGCGAGGTGGTGCC GTCGGCGGCGGGGTCGGAGTCTGCGGGAGCGCAGAGTGCGAAGGAAGAGG CCGAGGCAAGGGAAGCTACCGCGAAGTGCCTGGCGGGGCTGGTGCGCTCG CTTGGGGGAAGGCCGTTCTGCCCGACGCTCGCTGGCGTCTTACTACAGAA CATGCCGTCCCAGAAGACGAGCGAGGCCGGCGTGGAGGTTGAGCGGCTGA AGGCGTTGCTCCGGCGCCAGCAGACCTGGGGCATGTGTTCTGGTGGCCGT GGCGGTGCGGGCGAGAAAGGAGGGAGGAGAGATGGCGCAGGCGGCGGTGG TCGTGGTTCCCGGGCCGGGGCGAAGGGTGTGCAGAGCGGTTCGCTCCCCC GTGTGTGTGTTGTTTTAGTGGGTTACCAGTGA back to top
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