mRNA_P-littoralis_Contig620.28.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.28.2
Unique NamemRNA_P-littoralis_Contig620.28.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig620.28.2 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 446 bits (1147), Expect = 1.320e-150
Identity = 265/397 (66.75%), Postives = 295/397 (74.31%), Query Frame = 3 
Query:  420 QSLDEFWQEPWTQSTWMSTLSQNPAAQGLHPASWMYPSNPSRHDSMDFDFGTCFSQSSSEGLPSPGSSPLNNQPCKGGSTAXXXXXXXXAGARAGGGSGIPQLVEHXXXXXXXXXXXXXXXXXXX--TLPMTPPPGLSDERFGRFAAGANPSGGSGT------HAYQSSPSPYLGAMGARAGTSRSSSVDSDSSSVHGVYGGSIASSAAGAASGPYAFQISGYNTVELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDPSSSAMTLRAAVAESESEHEWASAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEIITAEPIGTAAQNKALKYRTRKDRLEQIVLRADGFRHGIPYPDYFGHAPLSTSAPIPEILPSDAILVRSTERFYLCIPESC 1586
            + LD+FWQEPW Q TW+ST+SQNPAAQGL P+ WMY S+P + DS+DFD G+ FSQ+SSE  PSPGS PLN+   K GSTA             G G    Q +EHXXXXXXXXXX           TLPMTPPPGL+ ERF   AA                H    S S  L  MGAR+GTSRSSSV+SD+S    +YGG+           P AFQI GY T+ELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVD S SA +LRAAVAESESEHEWA+AVPLAIRDATVAQLVGALHLAQRSAEVAAAATGE + AEP+GTAAQNKALKYRTRKDRLEQIVLRADGF++GIPYPDYFG+APL++S PIP+ LPSDAILVRSTERFYLCI E+C
Sbjct:    9 RGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQDSLDFDLGSSFSQASSEDPPSPGSPPLNHGQWKRGSTASTASSCGSISVSGGAGH---QPIEHXXXXXXXXXXAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXXXXXXXPHXXXXSQS-LLATMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXXPCAFQILGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCIREAC 401
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.28.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI1.320e-15066.75HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:52534..57290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1615
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionTransposase, putative, helix-turn-helix domain
Ec32 orthologEc-26_002150.1
Cds size1305
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.28.2prot_P-littoralis_Contig620.28.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 52560..57006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.475698-UTR-P-littoralis_Contig620:52533..525591680791296.475698-UTR-P-littoralis_Contig620:52533..52559Pylaiella littoralis U1_48UTRP-littoralis_Contig620 52534..52559 -
1680791296.533535-UTR-P-littoralis_Contig620:57006..572901680791296.533535-UTR-P-littoralis_Contig620:57006..57290Pylaiella littoralis U1_48UTRP-littoralis_Contig620 57007..57290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.4859354-CDS-P-littoralis_Contig620:52559..527041680791296.4859354-CDS-P-littoralis_Contig620:52559..52704Pylaiella littoralis U1_48CDSP-littoralis_Contig620 52560..52704 -
1680791296.4951565-CDS-P-littoralis_Contig620:53129..534581680791296.4951565-CDS-P-littoralis_Contig620:53129..53458Pylaiella littoralis U1_48CDSP-littoralis_Contig620 53130..53458 -
1680791296.5082774-CDS-P-littoralis_Contig620:54761..553451680791296.5082774-CDS-P-littoralis_Contig620:54761..55345Pylaiella littoralis U1_48CDSP-littoralis_Contig620 54762..55345 -
1680791296.521238-CDS-P-littoralis_Contig620:56759..570061680791296.521238-CDS-P-littoralis_Contig620:56759..57006Pylaiella littoralis U1_48CDSP-littoralis_Contig620 56760..57006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.28.2

>prot_P-littoralis_Contig620.28.2 ID=prot_P-littoralis_Contig620.28.2|Name=mRNA_P-littoralis_Contig620.28.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=435bp
MMNSRSASTDERQQQQQQQQQQQQQYHHHQQHQQQPQRHQQQQQTQSLDE
FWQEPWTQSTWMSTLSQNPAAQGLHPASWMYPSNPSRHDSMDFDFGTCFS
QSSSEGLPSPGSSPLNNQPCKGGSTAGTSTAGTSAGARAGGGSGIPQLVE
HHHHYYHHHSAPSRTMSSSSTLPMTPPPGLSDERFGRFAAGANPSGGSGT
HAYQSSPSPYLGAMGARAGTSRSSSVDSDSSSVHGVYGGSIASSAAGAAS
GPYAFQISGYNTVELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDPSSS
AMTLRAAVAESESEHEWASAVPLAIRDATVAQLVGALHLAQRSAEVAAAA
TGEIITAEPIGTAAQNKALKYRTRKDRLEQIVLRADGFRHGIPYPDYFGH
APLSTSAPIPEILPSDAILVRSTERFYLCIPESC*
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mRNA from alignment at P-littoralis_Contig620:52534..57290-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.28.2 ID=mRNA_P-littoralis_Contig620.28.2|Name=mRNA_P-littoralis_Contig620.28.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4757bp|location=Sequence derived from alignment at P-littoralis_Contig620:52534..57290- (Pylaiella littoralis U1_48)
TAACGACTGCAACTCGACTCACTACTCTCCTTCCCTCCGCAGATTTCAGC
AGATTTTCCTCCTCGCACTCCCTGCTGCAGCAGCACCTCCACAGCGATAC
TCTCTCTACGTCAACTTGTTGTCTGATCGAGAGCCAGCGCCTTGTGTGTC
TGTGTGCAACAGCAGCGCAAGCGACAGCTGTAGTACCAACCTGGATAACG
ACGAAGACGGCCGACAACGAGACGACCAACAACCTGTCGCGTATCTGAAG
GTAGCTTCGCGGATACCTCACCAAGAGAGAAACCATGATGAACAGCAGAT
CCGCGAGCACCGACGAACGACAGCAGCAGCAGCAGCAGCAGCAACAGCAG
CAACAACAGTATCATCATCATCAGCAGCATCAGCAGCAGCCGCAGCGGCA
TCAGCAACAACAGCAGACGCAGAGTCTGGACGAATTTTGGCAAGAGCCTT
GGACCCAGAGTACTTGGATGTCGACTCTCAGCCAGAACCCTGCAGCTCAG
GGCCTTCATCCGGCTTCCTGGATGTACCCGAGTGAGTTGAGTGATGTTTC
GAAAGCTGTCACTGCCGCTCCTGCGTGCGTATTGCCCCTAAGTACTTCGT
ATAAACGAACTCCGGCGGACCAGCCACAAGGCGTTCAGGCATACTTTCTA
GAACTTCCATGTATGTCCCCCCCGAATCATAGCATGAACAACCGCCGGCG
GCGTCCTGTGTGTCACTGCCGATACGTGTATGTATATCGCTCTTTGTGTT
AGCGTCTAAATTATTTTCCTGTCCAAGGAGAGCTCCAATACGCCCTTGTG
TGATTCGAACGGCATGATTTGGACATTGAAACTGCCTAGAGCGCAGAAAC
ATTAATATCTTCAGCGAGACAGAGGCAGGAGCAGTGTGGCGAGTGCAGCG
CCCAGCCACGTGTGTTCTCGTACGGCGCCGTTGTCTTATCCCAATAAAAA
AATCAAGTAAAATAAAAATGGCAACAGTAACCTCAGTGTGGCCGTTCATA
CGCGCTGGGGACCAAATTGCAGTTCTGCTGCGCCGTATGCAGGGAGGACC
TCGTACGCAGGACAGCGTCAGTCTACCCCCTTCGACCGTGTACGTAGGCA
TGAGGGAGGGTGTACTGGCATCTCACAACAGTGAACGGCTGTGGTTCAGG
CCTGGTTCAGGCCTTCTCACAGATGGCATCTCCGCGAATCTATGGCAGGC
AGCGGGGTCATATTATTCCCTTCCCTCCCCAAAGTTTGCAGCAGCGTCGT
TCGTCGTTCAGCTCCATCCCATGTGACATCTTCAGGCGCTCCCAATCCAT
ATCGCTCAAGAGCGCATTACAGCACCAGTATTATTATTTTTTTCTCTGAA
CCTCCTTCTTGTTTGGACCTTTTTCCCTTCCCTTTTGCAGCACAACGGAT
TTCTTCGTTCTTGGCGCCCCTCTGTAAAACCAAGACGAAAAGGGCATCGC
GAAAGACGTACTTCGCGTGTAACAGCCTCACTCAACCGAACCGCGTCTTC
CTTTAGAAATAGCAGAGTGTAATGCGAAGGGCGGGGCCTCAATCGAGCCC
GTCTCGACTACGACATGCCCCTCCGGATTGTCCTTGGAACTTGCCCTGCG
CGTTCGCACGCACGCACGTGCACGTACCTCACAGTAGTGCGCTGTTATTC
ACACACGTAGTATATACTACCAGTACCCCACTGATTTTCTTCGTACGTGG
CCGAGTTTGCGACATTTTCCTGTTCGTCACAATTTCGAAGTGCATCTCAG
CGGCTACTCCATGATATGATCATGACAGCTTACAAACAATGCTGCGTTAA
ATCGTTTGCAGAGTGTCTTGCTCGTCTTCCCGTCAGTCAATGCAGTACGC
AGCAGGCGCATGCAACAAAGCTCTCTAGCCCTCTCTCGTAACCCGCCCCG
CCCCTTTCCTCCTCCCACGCTTCCATTTTTGTTTGAAACACAAAGGTAAC
CCGTCCAGGCACGACAGCATGGACTTTGACTTCGGCACTTGCTTCTCCCA
GTCTTCCAGCGAAGGCCTGCCGTCCCCGGGCTCCTCCCCCCTCAACAACC
AGCCGTGTAAGGGAGGAAGCACCGCAGGCACCAGCACCGCCGGCACCAGC
GCCGGCGCCAGGGCCGGCGGCGGTAGTGGCATTCCTCAGCTCGTCGAGCA
CCACCACCACTACTACCACCACCACTCCGCCCCCTCGCGAACAATGTCTT
CTTCGTCCACCTTGCCCATGACACCCCCACCGGGTCTCTCCGACGAGCGA
TTCGGACGCTTCGCTGCCGGCGCGAACCCCAGCGGTGGCAGCGGCACCCA
TGCCTACCAATCATCCCCCTCCCCGTACCTCGGGGCCATGGGGGCGCGGG
CCGGAACGAGCAGATCGTCGAGTGTCGACTCTGACTCCTCTTCTGTCCAC
GGCGTTTACGGCGGGTCGATCGCCAGCAGCGCAGCTGGCGCAGCAAGTGG
GCCGTACGCGTTCCAGATCTCGGGATACAACACCGTGGAGCTGCTACCCA
CGGCACAGCAGCGTCAGACACTACAGAAGGTGTGCGTGTGTGTGTGTGTG
TACTTTTTGCTCCCGTAAGCTTCGCATAGAGGTAATTTCATGCTTTTTCT
CCGGTACCCGTCGCGTAGAGATGGTATTATATCTTCTGGTCGCACAAGCA
TGTCTTTCTTTCTTTTTGCTGAGGCGCATCGCAAGCTTTTTTTCTGAGAA
ATGAGGGGAGTAATTCTCTCTGTGACGCTCAAGACATACCAGGTAGGTAT
GTCTTCTGGGCATTCATTACAGTACTGCATTTTTACACTTTCATGACGCA
CCTGCATCCTCTCGCCTCTTTTCGCCCTTGTACCCGTCCTACCTTCGGGT
CAAACTCGCCAGGACGGGGGTACCATGCAGCAGGCACGGCTCCTAGGTTT
TCATATGCGACCGGTCTCAAAACGTTTTCGTACCTACACGTGTTTTTTGT
GTCACGATGTGTTATTTTTCTTCTCCCGGCGCTGCTGGCAATCGCTTCAA
CGTCAACCACGCCACGTTAACCTTTCTTTGGATCGAAATAACTACAAAGT
AGATCGAATTACAGCAGTAGTGAGAATGAGATGATGATGCTGAGATAAGT
GTTAGTAGCCTTTACTTCCTGCGTGTTTTCCGGCTCGTTTTGTTCGGCTC
AGTAAAATTTGGTGACAACGGGCTAGATCTCACATCAAACCATCCTGAGA
ACCAACAATAAACAAGACATCGAGACAGACTTTTTGACAAGACCGCTCGC
GTTCCGTTCTACCACATCTACCACGCTTGCACCGGCGACGTCGCTTTCCG
TCGAATCGTACGAAGCTGCGAGCCTTGCAGGTGCAGCAGACGTCTGCCCC
CTCCCTGATTCCCTCACATACATCTCATGTGATACGGATGCACAGAATCC
GCTTGTAAATAAACACTCAACACATGATGTAACGTGTGTCCATAAGATGA
CCACCAAATTGTCTTGTTGAGCCTAAAACCCTCAGGGAAGCTGCAACGGT
ACATTGTTTAATGGGTCGTAGAAACACTTGTAGATGTACCTTGCTCTTTG
TGTTCGTTGCAATACCTACTTCATAACCTCGTCTGGAGAGAGGCGAACAC
ATTGATGTGTTTGTAACAGTTACAAAAATATATATCCCTTTTTTCTCACA
ATAGCGCGCCTGTCATCATCACTGCCGTTTACTCCGCCAAAAAACACAGG
CAGCTCAGCAGTCCGACAAGAGCGGGCACCACCACACCACTTCCGAGCAT
GACCATACCAATAAAGCGATTGCAACCAACTATCTATGTTCAACAATTCG
ATCCTCCAACCCTCCCCCCCCAACAATAACAGTGGTTTGGCGTCGTCAGG
TGGATCCACAACCGCGCCGTCGACGCCCTCCGTGTCGACCCGAGCTCGTC
CGCGATGACCCTCCGCGCCGCCGTGGCGGAGTCCGAGTCAGAACACGAGT
GGGCCTCGGCCGTGCCCCTCGCGATCCGGGACGCCACCGTGGCCCAGCTC
GTCGGAGCGCTGCACCTGGCGCAACGGTCGGCGGAGGTGGCGGCGGCGGC
CACGGGGGAGATCATCACAGCCGAGCCCATCGGGACGGCCGCTCAAAACA
AGGCTCTCAAGTACCGTACCAGGAAGGACCGGCTCGAGCAGATCGTGCTT
CGGGCAGACGGGTGAGTTTTTTTTTCCAGAGTACGTCTATGTTTTCTGTC
TTTCGTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTATTGTCGTTGCGGTGCTGCCTGCGGTGCTGCCTGCGGTGCTGC
CTGCGGTGCTGCCTGCGCACACAAGAACGTTGCGTTCCGTGCAATCTCCT
ACTTGTCGTTAGCGGTCGGCTGTCGCTTAATGATGCAGCATCATCCTGCT
CATTCAACCTTACCGCCTCTTAACAAACCCTAAACCTGATCGCGCCAATC
AAGAAAAACCAGTTCCTTGCATTTCACACTATCTACTTCATCGCGTTGTC
GTCCAAAATATGAATATTATCACCTCCTCCCGCTTCTTGGGACTGTAAAC
CCCTTGACTCCCCTCCCCCCACGCAAAAAACAACAGATTCCGGCACGGTA
TCCCCTACCCGGACTACTTCGGACACGCGCCGTTGTCAACCTCGGCGCCG
ATCCCGGAAATACTGCCTTCGGACGCGATTCTCGTGCGCAGCACGGAGAG
GTTCTACCTGTGCATTCCGGAATCGTGTTGAAAAAAATGAGGAATTGGAA
ATAAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:52534..57290-

>mRNA_P-littoralis_Contig620.28.2 ID=mRNA_P-littoralis_Contig620.28.2|Name=mRNA_P-littoralis_Contig620.28.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1305bp|location=Sequence derived from alignment at P-littoralis_Contig620:52534..57290- (Pylaiella littoralis U1_48)
ATGATGAACAGCAGATCCGCGAGCACCGACGAACGACAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAACAACAGTATCATCATCATCAGCAGCATCAGC
AGCAGCCGCAGCGGCATCAGCAACAACAGCAGACGCAGAGTCTGGACGAA
TTTTGGCAAGAGCCTTGGACCCAGAGTACTTGGATGTCGACTCTCAGCCA
GAACCCTGCAGCTCAGGGCCTTCATCCGGCTTCCTGGATGTACCCGAGTA
ACCCGTCCAGGCACGACAGCATGGACTTTGACTTCGGCACTTGCTTCTCC
CAGTCTTCCAGCGAAGGCCTGCCGTCCCCGGGCTCCTCCCCCCTCAACAA
CCAGCCGTGTAAGGGAGGAAGCACCGCAGGCACCAGCACCGCCGGCACCA
GCGCCGGCGCCAGGGCCGGCGGCGGTAGTGGCATTCCTCAGCTCGTCGAG
CACCACCACCACTACTACCACCACCACTCCGCCCCCTCGCGAACAATGTC
TTCTTCGTCCACCTTGCCCATGACACCCCCACCGGGTCTCTCCGACGAGC
GATTCGGACGCTTCGCTGCCGGCGCGAACCCCAGCGGTGGCAGCGGCACC
CATGCCTACCAATCATCCCCCTCCCCGTACCTCGGGGCCATGGGGGCGCG
GGCCGGAACGAGCAGATCGTCGAGTGTCGACTCTGACTCCTCTTCTGTCC
ACGGCGTTTACGGCGGGTCGATCGCCAGCAGCGCAGCTGGCGCAGCAAGT
GGGCCGTACGCGTTCCAGATCTCGGGATACAACACCGTGGAGCTGCTACC
CACGGCACAGCAGCGTCAGACACTACAGAAGTGGTTTGGCGTCGTCAGGT
GGATCCACAACCGCGCCGTCGACGCCCTCCGTGTCGACCCGAGCTCGTCC
GCGATGACCCTCCGCGCCGCCGTGGCGGAGTCCGAGTCAGAACACGAGTG
GGCCTCGGCCGTGCCCCTCGCGATCCGGGACGCCACCGTGGCCCAGCTCG
TCGGAGCGCTGCACCTGGCGCAACGGTCGGCGGAGGTGGCGGCGGCGGCC
ACGGGGGAGATCATCACAGCCGAGCCCATCGGGACGGCCGCTCAAAACAA
GGCTCTCAAGTACCGTACCAGGAAGGACCGGCTCGAGCAGATCGTGCTTC
GGGCAGACGGATTCCGGCACGGTATCCCCTACCCGGACTACTTCGGACAC
GCGCCGTTGTCAACCTCGGCGCCGATCCCGGAAATACTGCCTTCGGACGC
GATTCTCGTGCGCAGCACGGAGAGGTTCTACCTGTGCATTCCGGAATCGT
GTTGA
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