mRNA_P-littoralis_Contig620.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.11.1
Unique NamemRNA_P-littoralis_Contig620.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:35838..36346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size509
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.0004513-UTR-P-littoralis_Contig620:35837..358711680791296.0004513-UTR-P-littoralis_Contig620:35837..35871Pylaiella littoralis U1_48UTRP-littoralis_Contig620 35838..35871 -
1680791296.0248806-UTR-P-littoralis_Contig620:36339..363461680791296.0248806-UTR-P-littoralis_Contig620:36339..36346Pylaiella littoralis U1_48UTRP-littoralis_Contig620 36340..36346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.0125206-CDS-P-littoralis_Contig620:35871..363391680791296.0125206-CDS-P-littoralis_Contig620:35871..36339Pylaiella littoralis U1_48CDSP-littoralis_Contig620 35872..36339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.11.1prot_P-littoralis_Contig620.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 35872..36339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.11.1

>prot_P-littoralis_Contig620.11.1 ID=prot_P-littoralis_Contig620.11.1|Name=mRNA_P-littoralis_Contig620.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MYFNGQLVRLGCRCRQEHRPVMAGDYAPATTTLVFYGPSAVGVDAHVLKC
LVHGISRHRLCPVWYHSIVDNKSRWMFPSLCGNLGAAFPIHKDRRSTWAG
SGSRFSWCWPPAQRAAVAPSSEINYLGLFPEPGWNVVWAWRSWAVPWWAP
ACPRS*
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mRNA from alignment at P-littoralis_Contig620:35838..36346-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.11.1 ID=mRNA_P-littoralis_Contig620.11.1|Name=mRNA_P-littoralis_Contig620.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=509bp|location=Sequence derived from alignment at P-littoralis_Contig620:35838..36346- (Pylaiella littoralis U1_48)
AGTATCAATGTATTTCAACGGCCAACTGGTACGGCTCGGTTGTAGGTGTC
GGCAAGAGCACCGGCCAGTCATGGCGGGTGACTACGCCCCTGCGACGACG
ACGCTAGTGTTCTATGGACCTAGCGCTGTCGGTGTTGATGCGCACGTATT
GAAATGTTTGGTGCATGGCATTTCGAGGCATCGCTTGTGTCCGGTGTGGT
ACCACTCCATAGTTGACAATAAATCTCGCTGGATGTTTCCTTCCTTATGT
GGTAACCTTGGCGCTGCTTTCCCCATACACAAAGACAGGAGGTCCACCTG
GGCCGGGTCGGGGAGCCGTTTTTCGTGGTGCTGGCCTCCAGCTCAACGGG
CTGCAGTTGCGCCGTCGTCTGAGATAAATTACTTGGGCCTTTTTCCTGAG
CCTGGGTGGAATGTCGTGTGGGCGTGGAGAAGCTGGGCGGTACCGTGGTG
GGCTCCAGCCTGTCCGCGCAGCTAATGCGCCGTCTTTTGGAACTATCTTA
TCTGGACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:35838..36346-

>mRNA_P-littoralis_Contig620.11.1 ID=mRNA_P-littoralis_Contig620.11.1|Name=mRNA_P-littoralis_Contig620.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig620:35838..36346- (Pylaiella littoralis U1_48)
ATGTATTTCAACGGCCAACTGGTACGGCTCGGTTGTAGGTGTCGGCAAGA
GCACCGGCCAGTCATGGCGGGTGACTACGCCCCTGCGACGACGACGCTAG
TGTTCTATGGACCTAGCGCTGTCGGTGTTGATGCGCACGTATTGAAATGT
TTGGTGCATGGCATTTCGAGGCATCGCTTGTGTCCGGTGTGGTACCACTC
CATAGTTGACAATAAATCTCGCTGGATGTTTCCTTCCTTATGTGGTAACC
TTGGCGCTGCTTTCCCCATACACAAAGACAGGAGGTCCACCTGGGCCGGG
TCGGGGAGCCGTTTTTCGTGGTGCTGGCCTCCAGCTCAACGGGCTGCAGT
TGCGCCGTCGTCTGAGATAAATTACTTGGGCCTTTTTCCTGAGCCTGGGT
GGAATGTCGTGTGGGCGTGGAGAAGCTGGGCGGTACCGTGGTGGGCTCCA
GCCTGTCCGCGCAGCTAA
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