mRNA_P-littoralis_Contig620.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.45.1
Unique NamemRNA_P-littoralis_Contig620.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:112570..117903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1750
Hectar predicted targeting categoryother localisation
Exons2
Cds size1749
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.8933218-CDS-P-littoralis_Contig620:112569..1129561680791295.8933218-CDS-P-littoralis_Contig620:112569..112956Pylaiella littoralis U1_48CDSP-littoralis_Contig620 112570..112956 +
1680791295.9042275-CDS-P-littoralis_Contig620:116540..1179021680791295.9042275-CDS-P-littoralis_Contig620:116540..117902Pylaiella littoralis U1_48CDSP-littoralis_Contig620 116541..117902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.45.1prot_P-littoralis_Contig620.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 112570..117902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.45.1

>prot_P-littoralis_Contig620.45.1 ID=prot_P-littoralis_Contig620.45.1|Name=mRNA_P-littoralis_Contig620.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=583bp
PNCFSCDVKRGTFTGSPTVRTTDLDRREGEGGANDFGRGFPPEMDSATAT
GSGQVRLQPRREDQRCRSKFVLVPVLVLQGLNGDEGETEREIIPLQSGDN
VVETRPPAAITMGGGAAGWDSSVAGTNPQGGFAYKQQVDLLTLDTQDPFV
QLTAYCEVRIRGRVAGTTRISTGGQQLFSIGDTLDLGVVDGRDFKCLHSY
TLELASSMTPGATADSNPGVGDADGAAGGLPTGSTGNLRGVGVSPKTETT
LCARGAGSSGSSSSKSGSSMVARVSAGRKAGARDAKGVAGGLLVGSTGRQ
RGVDVSPKTATPSSSLRCARGAGSSSKSGSESGSMMTAAATARRKLGARD
AKGAAGELLVGSTGKPGGADVSPKTATPSSLSSCARGARSSSSSNNKRGS
SMAAGVTGGRNPGAMDAWCASGGSLTGSIGQRRKVDVSPKTATPSSPSTR
ARGAGISSKSGSGSGSGTKAGARDVKGAARGLLMGPTGKPGEVDVSPRTA
TPWSSSSCARGAGSSSSGSSKSGSMMAARATAGRNVGARDAWWASEGLLT
VSTGRRGVDVSPKTATPPSSSTCARGAGSSDSS
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mRNA from alignment at P-littoralis_Contig620:112570..117903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.45.1 ID=mRNA_P-littoralis_Contig620.45.1|Name=mRNA_P-littoralis_Contig620.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5334bp|location=Sequence derived from alignment at P-littoralis_Contig620:112570..117903+ (Pylaiella littoralis U1_48)
CCAAATTGCTTCTCCTGTGACGTCAAACGAGGAACGTTCACCGGGTCGCC
CACAGTCCGGACAACCGACCTAGACAGAAGAGAAGGAGAGGGAGGAGCGA
ACGACTTCGGGAGAGGCTTTCCGCCTGAAATGGACTCGGCGACGGCTACC
GGATCCGGTCAAGTTCGTTTACAACCGCGGCGCGAAGATCAGCGGTGTAG
AAGCAAATTCGTGTTGGTGCCCGTTCTGGTATTGCAAGGTTTGAATGGGG
ACGAGGGAGAGACCGAACGGGAGATCATTCCCCTGCAAAGCGGAGATAAC
GTAGTCGAAACCCGCCCACCTGCTGCAATAACTATGGGGGGGGGTGCAGC
AGGGTGGGATTCATCGGTAGCAGGCACGAATCCGCAGGTAAGGGTTTCAT
GTCCAACGGCTGTTGTTTCGCATTGCATCCACGTTCATTCCAAACGCAAC
AAAACAGCAGCACCGCCCTTGACAAATGTGCTTCCACAAGCGCTCCTGCG
GCTGCGCTGTTCCTGCCCCGTGATCTTAAAATTCAAAGCCGAAGTGCTGA
GACTCTGGTGTATGTAGTTCAAACATCGTTGGTACTGCTGTTTCGCGCTC
CGGTGCTCTACAGTAATTCGAAAGGCGCAGCACTTCCTGAACCAGCTCTT
AGTAAGTTTAAATATTATACGAAGTATCGAGTATATCTTCTCATATCACA
CGTTTCATGTGACATTAGTCGAAGTATAGTACGAATTATGACATCACACA
GAGCAGCAGACAAGCGTATTGAAGGCGTCCACCGTAGAAGGAGGGAGGAA
TCACTCTGTGTGGCACCAGCTGGCTTACGCAGGTTCACACTTCCGTGTAC
ATCAGGCTGAAGGAGAAAGGTTATAAGATAGTTGATACGGCGGTGTACAG
GCAGCGTAACGTGCGTGGGATGGTGTGATTGAAACGACATTTCAAGCATC
GTGAGACTACAAGGGGCTCCGCTCGCCGCCCGGCCTGGCGGCCGACGGCT
CGCCGAGCGCATCATGATCGCGGGGCGATGTAAAAGGGAATCCAGTCGGA
GGTGAAAATTGGGATGGTGGGCCTCCCAAGTGCGGAATACCAAACGAGAC
GCTGAGTATTTGTGTATGCAAGTTGATGGCGGATGCTTTGGGTTTGGTGG
ATGATGTTGGGTTCGTTGATGTTCATGATGTTCACGATGCGCGGCCGGCG
GCTCGCCTCGCGCATCGTGATCGTGAAGTGACGATGGAGAGAAAAACAAC
AAACAGAGCGCTCTCTGATTGTGGGGCGGACACAAGAAGGGTCGAAGAGG
AAGGATGACTACTGCTCAAAAGCCGCTGAGCTCACAAAAGCTACTGCTGC
ATCTACTTCAAAGTACTGCTGCTGCTGTAGTACTCATACAGAGTTTGTGA
ATGTCTCGTGCTCGGAGAGTACTATGCAGTAAACTACGTGATGCTGCTGC
TGCTGCTGTGGAGTGCAACTTCCAACGTACTACGATAGCACTACGTTATA
TACACACGTACATGTACATACACTCTATGTTAGCATACACAGCTGCTCTG
TAGTCAACCCCATCTCGCGCACGAGAGAACACATCGATTGCACCACAGCA
GTAGCTGATACTGCCATTGAAGTATCGTATCATACAACAACAATGAACCC
AAAATACATACAGCAGTAGAACACATCTATCGGAAGAATAGCAGATCAAG
AGGAAATCCCCACGACTGTCGTGTGACAGGACTGTTAAGAGTTAAATAAT
TCAAGGCCTGATTTGCCAGAGTTGGAGCTTGGGATTGACAGAACCATGCG
AGGCGGTTTAGGTTCCCTCCCCCCGGTGCTCCATGAGCCGGCAGTTACCT
TTATCAGCAGATGCCGATGAGATGGAACACATGAGGCATCCAGCAGCTAC
TCGTCATCCGCAGAAGCGGGTGCTGGCGCTCGATATTCTTTGCGTATTTT
GCACGGGCCATTCGACGGGGGATTTCGAACCCCGGGGGCGTTGCGGTTCG
GGAGGACGTCCATAGGCCATCTTGCAAAGCCAATATCGCGGCGAACGTAC
GATTCACAACACGAGACTTGCAGGGACGAGCCAGGTACATTCCGGAGCAG
CGGCAGGCGAAATAATCGTGTGCCCATCTTTTTTTATTTCAGAGTTCGGA
GCAAAAAGTGCTACACCACAGCAGCAGTACACACGAAACAAACGAGACCG
AATCGAGACAGTAGATATGCAGCGAACCTACCGGCCGCAGTGCACAGCCT
GCAAACAATGGTTTGGCGAGGTTAATGAGCTTGCTTGGTCAAATTTCAAG
TTTTAGTGTCAGGTGAGCGAGGTTTTCGGCCGCAATGAAGCCATTGGCCG
AAGTTTTGGAGCTTTGGTCAATCCAATTTCAAAATTCACGCCAAGCAGCA
GTGGAAATGCTTTCGCGCAGTTTGACAGATGGTTAAGAGGATCTCGTGGA
GGCTTGACGGACAAGGGCGGTAAAAAATCCTGAGGGAAAAATCTTATTTT
GGATCCAAAAGATCAATGGAATTCTTTAATCAAAGCTGAAGTAGCTTATT
TGGCTTAACGTTGGGGGGAGACATGTCGACAAGTGTTGGTGTGGGTCAAG
GGTAGGTGTGGTCTAGATATTGTGGCATGCGGGTGGGCAGTATACGCTAC
GGGGTTTGGGGACCCGGATCTATTGTTCATCTAAATGGACAACGAGTTGC
ATGCAATACGACCGTGACATTGTAGACGGTGCAGCCTGATCCATACACGC
TCCCGCGCACACGATCCCGCGCGCGAAAGTGGGTGTCAGATATGTATGTT
GTTGCAGTCGCGGGGGCCTGTCGGGGGAGCTCCATGAAGGAAAGTCAGAT
AAAGGGTCATTTTTCGCAAAGTCTCTAATTAGGAAGAAACGGTTTGAGCG
GAAACAACGACCAACGATCGTATCTTCCACAGCACACCAACCAAGCCTTC
ACCTCTCCTTGAGGCAAGGATTAGAGTTTGGGTTCGGTTAGGGTGGGTCG
TGGGTGGTCTTGGCAAAGGGGTACCGCGCAGTATCCGGGGTTATTGATCA
GTGTGCCTACGACACCTCCAGAGTGGACGAAAAAAACAACGCTGCAGCCT
TGGCATGTGATTTTTAAAGGTAAACGCTCTCCGATCGCCGAGAGGTTACG
CCGAGAGAGACTCCGCGATCCAGCCGTGATTTACGTAACTACCGCGCACC
TGTGTAGCAGGGCGAACCTGCCGAGAAGTCCATTCTCCGATTTATACCCG
TATCGCGATGACAGTCTACTCTGTATAATCAGGTAGCCACACCACAAATC
GTTGTTTTATTAGGTACCTGGTACGTAGCAGTACTCATACGTCGCCCCCA
TGTGTGGAGCTGCAGACCCCCGCCGATCCCCCACAATGCAGTTAATATCT
CATACGCATACTCGACCCTTCCTACGATAAGCCGAAAGTACGGAGTTGTG
ATCCTGCAGAATTATGGCGCAGGGCCTCCAGGGAGAGAGATCGTTCTGTG
TGACCCCGGCTGAACATTGTGACGTGTGGAGAGTTGGTCAAAGATAGAGC
TGGCAGTAAACGTGGGTGCACATAATTTAAAGAATGTCAACAACACACAC
ACCATCACGGCGAGATAGCAGTTGCGTTTGGCACAAATACCGTGCTCAGC
ATGGACACCTTATACCCGTGGAGCGTTGCTGCTCTTTCATCACACGGCAG
TTTCTCGAAACCTAAAGTACCATCTTTTAATACCCGGCTGCAACACTTGC
TTTACACAACCACGACCTAGTCCGGCTGAAGCACCTTGCCGTAGACCACG
TACGTGCATGCACTTTTGATAACGTTGCCTGGAACGACTCAAAACGCCCA
GCCAACGTGAGTCGAACTAGGCCGTCAGCTGCTAAGTTTGGGCAGCCCCC
TTCCCAGAAGCAACTATTGAGTACCCCCCCCCCCCCTCGCGCTTTCCTGC
TCCGATGTACACTCAAATCAGGGCGGTTTTGCCTACAAGCAGCAGGTTGA
CCTGCTTACGCTCGACACCCAGGATCCGTTTGTTCAATTAACGGCCTATT
GCGAAGTTCGCATTCGCGGACGTGTGGCTGGAACGACAAGGATCTCAACC
GGCGGTCAACAGCTCTTCAGTATCGGAGACACCCTGGATCTCGGCGTCGT
CGACGGCCGGGATTTCAAATGCTTGCATTCGTACACGCTGGAGCTCGCCT
CCTCGATGACGCCGGGAGCCACCGCTGACAGCAACCCAGGTGTAGGGGAC
GCAGACGGGGCGGCGGGGGGGCTGCCGACGGGTTCTACCGGCAACTTAAG
GGGAGTCGGTGTCAGCCCGAAAACGGAGACGACGCTGTGTGCGCGTGGGG
CGGGCAGCAGTGGCAGCAGCAGCAGCAAAAGCGGTAGCTCAATGGTAGCG
AGAGTCAGCGCTGGGAGAAAAGCAGGTGCAAGGGACGCGAAAGGGGTGGC
GGGGGGATTGCTGGTGGGTTCTACTGGCAGACAAAGGGGAGTCGATGTCA
GCCCGAAAACGGCAACGCCGTCGTCTTCGTTGAGATGTGCGCGTGGGGCG
GGCAGCAGCAGCAAAAGCGGGAGCGAAAGCGGTAGCATGATGACGGCGGC
AGCCACCGCTCGGAGAAAACTGGGTGCAAGGGACGCGAAGGGGGCGGCGG
GGGAGTTGCTGGTGGGTTCGACCGGCAAGCCAGGGGGAGCCGATGTCAGC
CCGAAAACGGCAACACCTTCGTCTTTGTCGTCGTGTGCACGTGGGGCACG
CAGCAGCAGTAGCAGCAACAACAAACGCGGTAGCTCGATGGCGGCGGGAG
TCACCGGTGGACGCAACCCAGGTGCAATGGACGCGTGGTGTGCCTCGGGG
GGATCGCTGACGGGTTCAATCGGCCAACGAAGGAAAGTCGATGTCAGCCC
GAAAACGGCGACGCCGTCGTCTCCGTCGACACGTGCGCGTGGCGCGGGCA
TCAGCAGTAAAAGCGGGAGCGGGAGCGGGAGCGGGACAAAAGCAGGTGCA
AGGGACGTTAAGGGGGCGGCGAGGGGGTTGCTGATGGGTCCTACCGGCAA
GCCAGGGGAAGTCGATGTCAGCCCGAGAACGGCAACGCCCTGGTCTTCGT
CGTCGTGTGCGCGTGGGGCAGGCAGCAGCAGCAGCGGCAGCAGCAAAAGC
GGTAGCATGATGGCGGCGAGAGCAACCGCTGGACGCAACGTAGGTGCAAG
GGACGCATGGTGGGCCTCGGAGGGATTGCTGACGGTTTCGACGGGCCGCA
GGGGAGTCGATGTTAGCCCAAAAACGGCAACGCCGCCGTCTTCGTCGACA
TGCGCGCGTGGGGCGGGCAGCAGTGATAGCAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:112570..117903+

>mRNA_P-littoralis_Contig620.45.1 ID=mRNA_P-littoralis_Contig620.45.1|Name=mRNA_P-littoralis_Contig620.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1749bp|location=Sequence derived from alignment at P-littoralis_Contig620:112570..117903+ (Pylaiella littoralis U1_48)
CCAAATTGCTTCTCCTGTGACGTCAAACGAGGAACGTTCACCGGGTCGCC
CACAGTCCGGACAACCGACCTAGACAGAAGAGAAGGAGAGGGAGGAGCGA
ACGACTTCGGGAGAGGCTTTCCGCCTGAAATGGACTCGGCGACGGCTACC
GGATCCGGTCAAGTTCGTTTACAACCGCGGCGCGAAGATCAGCGGTGTAG
AAGCAAATTCGTGTTGGTGCCCGTTCTGGTATTGCAAGGTTTGAATGGGG
ACGAGGGAGAGACCGAACGGGAGATCATTCCCCTGCAAAGCGGAGATAAC
GTAGTCGAAACCCGCCCACCTGCTGCAATAACTATGGGGGGGGGTGCAGC
AGGGTGGGATTCATCGGTAGCAGGCACGAATCCGCAGGGCGGTTTTGCCT
ACAAGCAGCAGGTTGACCTGCTTACGCTCGACACCCAGGATCCGTTTGTT
CAATTAACGGCCTATTGCGAAGTTCGCATTCGCGGACGTGTGGCTGGAAC
GACAAGGATCTCAACCGGCGGTCAACAGCTCTTCAGTATCGGAGACACCC
TGGATCTCGGCGTCGTCGACGGCCGGGATTTCAAATGCTTGCATTCGTAC
ACGCTGGAGCTCGCCTCCTCGATGACGCCGGGAGCCACCGCTGACAGCAA
CCCAGGTGTAGGGGACGCAGACGGGGCGGCGGGGGGGCTGCCGACGGGTT
CTACCGGCAACTTAAGGGGAGTCGGTGTCAGCCCGAAAACGGAGACGACG
CTGTGTGCGCGTGGGGCGGGCAGCAGTGGCAGCAGCAGCAGCAAAAGCGG
TAGCTCAATGGTAGCGAGAGTCAGCGCTGGGAGAAAAGCAGGTGCAAGGG
ACGCGAAAGGGGTGGCGGGGGGATTGCTGGTGGGTTCTACTGGCAGACAA
AGGGGAGTCGATGTCAGCCCGAAAACGGCAACGCCGTCGTCTTCGTTGAG
ATGTGCGCGTGGGGCGGGCAGCAGCAGCAAAAGCGGGAGCGAAAGCGGTA
GCATGATGACGGCGGCAGCCACCGCTCGGAGAAAACTGGGTGCAAGGGAC
GCGAAGGGGGCGGCGGGGGAGTTGCTGGTGGGTTCGACCGGCAAGCCAGG
GGGAGCCGATGTCAGCCCGAAAACGGCAACACCTTCGTCTTTGTCGTCGT
GTGCACGTGGGGCACGCAGCAGCAGTAGCAGCAACAACAAACGCGGTAGC
TCGATGGCGGCGGGAGTCACCGGTGGACGCAACCCAGGTGCAATGGACGC
GTGGTGTGCCTCGGGGGGATCGCTGACGGGTTCAATCGGCCAACGAAGGA
AAGTCGATGTCAGCCCGAAAACGGCGACGCCGTCGTCTCCGTCGACACGT
GCGCGTGGCGCGGGCATCAGCAGTAAAAGCGGGAGCGGGAGCGGGAGCGG
GACAAAAGCAGGTGCAAGGGACGTTAAGGGGGCGGCGAGGGGGTTGCTGA
TGGGTCCTACCGGCAAGCCAGGGGAAGTCGATGTCAGCCCGAGAACGGCA
ACGCCCTGGTCTTCGTCGTCGTGTGCGCGTGGGGCAGGCAGCAGCAGCAG
CGGCAGCAGCAAAAGCGGTAGCATGATGGCGGCGAGAGCAACCGCTGGAC
GCAACGTAGGTGCAAGGGACGCATGGTGGGCCTCGGAGGGATTGCTGACG
GTTTCGACGGGCCGCAGGGGAGTCGATGTTAGCCCAAAAACGGCAACGCC
GCCGTCTTCGTCGACATGCGCGCGTGGGGCGGGCAGCAGTGATAGCAGC
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