mRNA_P-littoralis_Contig62.180.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.180.1
Unique NamemRNA_P-littoralis_Contig62.180.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: D8LUB7_ECTSI (Intraflagellar transport protein 172 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB7_ECTSI)

HSP 1 Score: 451 bits (1161), Expect = 4.770e-144
Identity = 216/224 (96.43%), Postives = 220/224 (98.21%), Query Frame = 1
Query:   70 MQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDDNGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            MQLRHL T+ QPATGEGGDG KMSKVMAVAWAPNNRKLAVCTADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSD IVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSN+PATLYNVD+FCAALATSPDGNGVVSAHADGTLYRFLFDDNGAPSHTKLVIHPSVPYALSWG+SIVAAGNDGQV
Sbjct:    1 MQLRHLNTIIQPATGEGGDGAKMSKVMAVAWAPNNRKLAVCTADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDSIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNRPATLYNVDSFCAALATSPDGNGVVSAHADGTLYRFLFDDNGAPSHTKLVIHPSVPYALSWGLSIVAAGNDGQV 224          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A6H5KMU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU1_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 1.540e-124
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 1
Query:  196 ADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDDNGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            ADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDS RLAVAQSD IVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSN+PATLYNVD+FCAALATSPDGNGVVSAHADGTLYRFLFDDNGAPSHTKLVIHPSVP+ALSWG+SIVAAGNDGQV
Sbjct:    2 ADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSARLAVAQSDSIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNRPATLYNVDSFCAALATSPDGNGVVSAHADGTLYRFLFDDNGAPSHTKLVIHPSVPFALSWGLSIVAAGNDGQV 183          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A835YVD3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD3_9STRA)

HSP 1 Score: 323 bits (828), Expect = 2.120e-102
Identity = 157/225 (69.78%), Postives = 179/225 (79.56%), Query Frame = 1
Query:   70 MQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDDNGA-PSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            MQLRHL TV  P  GEGG  + + KV A+AWAPNNRKLAVCTADRVV L+DENGEKRD+FSTKPA+KGPKNY+VR +                  FVYKLG EWGE KSICNKFPQPSP+T ++W +ARPN++VFGLA+GKVKIGQL++NKPATLYN D+F AALA S DGNGVVSAHADG +YRFLFDD+G  PSH +L +HP VPYALSWG SIVAAGND QV
Sbjct:    1 MQLRHLQTVLAPP-GEGGS-LPLQKVTAIAWAPNNRKLAVCTADRVVTLFDENGEKRDKFSTKPADKGPKNYMVRAMXXXXXXXXXXXXXXXXXXFVYKLGAEWGEKKSICNKFPQPSPVTALTWADARPNDIVFGLADGKVKIGQLRTNKPATLYNADSFVAALAASADGNGVVSAHADGAIYRFLFDDSGGGPSHARLAVHPCVPYALSWGRSIVAAGNDCQV 223          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A1V9ZC42_9STRA (Intraflagellar Transport Protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC42_9STRA)

HSP 1 Score: 295 bits (756), Expect = 5.060e-88
Identity = 141/228 (61.84%), Postives = 179/228 (78.51%), Query Frame = 1
Query:   64 IVMQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYDE-NGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDD-NGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            ++MQLRHL+TV  P  G       M KV A+AW+PNNR+LAV T +RVV ++D   GE++D+FSTKPAEKG KNY+VR L FSPDS++LAVAQSD IVF+YKLGLEWG+ KSICNKF Q S +T M WP A PNE+VFGLA+GKVK+GQL+SNKPATLY+  ++ A + T+P+G  ++S+H D ++YRF+FDD NG  + TK+ +H  VPYALSWG SIVAAGND +V
Sbjct:  976 LLMQLRHLSTVLPPTEG-------MCKVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKGDKNYVVRALAFSPDSSKLAVAQSDNIVFIYKLGLEWGDKKSICNKFAQASSVTSMIWPVAHPNEIVFGLADGKVKLGQLRSNKPATLYSTGSYVATMCTNPEGTAILSSHYDQSIYRFIFDDVNGGSTQTKIALHTCVPYALSWGESIVAAGNDRKV 1196          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A6A4ZTU4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZTU4_9STRA)

HSP 1 Score: 274 bits (700), Expect = 8.770e-88
Identity = 136/239 (56.90%), Postives = 175/239 (73.22%), Query Frame = 1
Query:   70 MQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYDE-NGEKRDRFSTKPAEK-------------GPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDD-NGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            MQLRHL+TV  P  G       M KV A+AW+PNNR+LAV T +RVV ++D   GE++D+FSTKPAEK             G KNY+V+ L FSPDS++LAVAQSD IVF+YKLGL+WG+ KSICNKF Q + +T M WP + PNE+VFGL++GKVK+GQL+SNKPATLY   ++ + L T+ +G  ++S+H D ++YRF+FDD NG  S TK+ IH  VPYALSWG +IVAAGND +V
Sbjct:    1 MQLRHLSTVLPPTEG-------MCKVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKVPPATTAMYLACVGDKNYLVKALAFSPDSSKLAVAQSDNIVFIYKLGLDWGDKKSICNKFLQTASVTSMVWPTSHPNEIVFGLSDGKVKLGQLRSNKPATLYATGSYVSTLCTNVEGTAILSSHYDHSIYRFIFDDVNGGSSQTKIAIHSCVPYALSWGEAIVAAGNDRKV 232          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A0P1AMT9_PLAHL (Intraflagellar transport protein 172 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMT9_PLAHL)

HSP 1 Score: 288 bits (738), Expect = 1.260e-85
Identity = 139/226 (61.50%), Postives = 177/226 (78.32%), Query Frame = 1
Query:   70 MQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYD-ENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDD-NGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            MQLRHLT++ Q   G       M KV A+A++PNNR+LAV T DRVV L+D + GE++D+FSTKPA+KG K+YIVR L FSPDS +LAVAQSD I+FVYK+GLE+G+ KSICNKFPQ S +T ++WP   PNE+VFGLA+GKVKIG L+SNKPATLY   ++ + + ++PDG  ++SAH DG +YRF+FDD  G P+H KLV+H  +PYALSWG SIVAAGND +V
Sbjct:    1 MQLRHLTSLLQATEG-------MCKVTAIAYSPNNRRLAVVTVDRVVHLFDGQTGERKDKFSTKPADKGDKHYIVRALEFSPDSCKLAVAQSDNIIFVYKIGLEFGDKKSICNKFPQTSSVTSLTWPSTHPNEIVFGLADGKVKIGHLRSNKPATLYATGSYVSQVCSNPDGTAILSAHYDGAIYRFIFDDVTGGPTHAKLVVHSCIPYALSWGDSIVAAGNDRRV 219          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A813BFQ9_9DINO (IFT172 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BFQ9_9DINO)

HSP 1 Score: 271 bits (694), Expect = 1.290e-85
Identity = 123/203 (60.59%), Postives = 162/203 (79.80%), Query Frame = 1
Query:  136 MSKVMAVAWAPNNRKLAVCTADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDDNG-APSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            M KV AV W+PNNR+LA+ T D+VV L+DENGE+RD+FSTKPA+K  K+Y++  + FSPDS++LAVAQSD IVFVYKLGLEWG+ K+ICNKF Q S +T ++WP+A PNEV FGL +GKVKIGQL++NK ATLY  D+F  ++ +SPDG+ ++S H DG++YRF F + G  P+  K  +H +VPYALSWG S++AAGND +V
Sbjct:    1 MCKVTAVCWSPNNRRLAIVTVDKVVHLFDENGERRDKFSTKPADKTNKSYMITGMSFSPDSSKLAVAQSDNIVFVYKLGLEWGDKKTICNKFLQTSSVTALTWPKAHPNEVAFGLQDGKVKIGQLRNNKAATLYTTDSFTVSMCSSPDGHALLSGHLDGSIYRFHFGEGGQGPAQGKFAVHSAVPYALSWGASVLAAGNDRKV 203          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A8K1FJC7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJC7_PYTOL)

HSP 1 Score: 287 bits (735), Expect = 3.190e-85
Identity = 139/226 (61.50%), Postives = 182/226 (80.53%), Query Frame = 1
Query:   70 MQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYD-ENGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDD-NGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            MQLRHLT++  PAT EG     M KV AVAW+PNN++LAV T DRVV ++D + GE++D+FSTKPA+KG KNYIVR+L FSPDS++LAVAQSD IVF+YK+GL+WG+ KSICNKFPQ + IT ++WP   PNE+VFGLA+GKVKIGQL+SNKPATLY   ++ + + ++ +G  ++S H DG+++RF+FDD  G P++TK+ +H  VPYALSWG SIVAAGND +V
Sbjct:    1 MQLRHLTSLL-PAT-EG-----MCKVTAVAWSPNNKRLAVVTVDRVVHMFDAQTGERKDKFSTKPADKGEKNYIVRELVFSPDSSKLAVAQSDNIVFIYKIGLDWGDKKSICNKFPQSTSITALTWPNTHPNEIVFGLADGKVKIGQLRSNKPATLYASGSYVSTVCSNMEGTAILSGHYDGSIFRFVFDDVTGGPTNTKITVHSCVPYALSWGESIVAAGNDRRV 219          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A397EVR2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EVR2_9STRA)

HSP 1 Score: 283 bits (724), Expect = 4.770e-85
Identity = 136/226 (60.18%), Postives = 175/226 (77.43%), Query Frame = 1
Query:   70 MQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYDE-NGEKRDRFSTKPAEKGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSAHADGTLYRFLFDD-NGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            MQLRHL+TV  P  G       M KV A+AW+PNNR+LAV T +RVV ++D   GE++D+FSTKPAEKG KNY+V+ L FSPDS++LAVAQSD IVF+YKLGL+WG+ KSICNKF Q + +T M WP + PNE+VFGL++GKVK+GQL+SNKPATLY   ++ + L T+ +G  ++S+H D ++YRF+FDD NG  S TK+ IH  VPYALSWG +IVAAGND +V
Sbjct:    1 MQLRHLSTVLPPTEG-------MCKVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKGDKNYLVKALAFSPDSSKLAVAQSDNIVFIYKLGLDWGDKKSICNKFLQTASVTSMVWPTSHPNEIVFGLSDGKVKLGQLRSNKPATLYATGSYVSTLCTNVEGTAILSSHYDHSIYRFIFDDVNGGSSQTKIAIHSCVPYALSWGEAIVAAGNDRKV 219          
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Match: A0A7S0RE83_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RE83_9CHLO)

HSP 1 Score: 270 bits (689), Expect = 1.370e-84
Identity = 132/228 (57.89%), Postives = 168/228 (73.68%), Query Frame = 1
Query:   70 MQLRHLTTVTQPATGEGGDGVKMSKVMAVAWAPNNRKLAVCTADRVVALYDENGEKRDRFSTKPAE-KGPKNYIVRDLCFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNEVVFGLAEGKVKIGQLKSNKPATLYNV--DTFCAALATSPDGNGVVSAHADGTLYRFLFDDNG-APSHTKLVIHPSVPYALSWGISIVAAGNDGQV 741
            MQLRHL     P  G       +SKV  + W+ N+R++AV T DR+V L+DENG+++D+FSTKPA+  G KNY+VR + FSPDS++LA+ QSD IVFVYKLG EWG+ KSICNKF Q S ITC++WP  + +EVVFGLAEGKVK+GQL+SNKPATLY     ++  +L +SPDG  ++S H DGT+YRF FDD    PS++KL  HP VPYALSWG SI  AG+D +V
Sbjct:    1 MQLRHLKCALPPTEG-------ISKVTTITWSSNSRRMAVVTTDRIVHLFDENGDRKDKFSTKPADPSGAKNYVVRGMAFSPDSSKLAIGQSDNIVFVYKLGTEWGDKKSICNKFHQSSAITCITWPHQQHHEVVFGLAEGKVKVGQLRSNKPATLYAHPDQSYVVSLCSSPDGRAILSGHLDGTIYRFYFDDGVLGPSNSKLTTHPVVPYALSWGESICVAGSDCKV 221          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUB7_ECTSI4.770e-14496.43Intraflagellar transport protein 172 n=1 Tax=Ectoc... [more]
A0A6H5KMU1_9PHAE1.540e-12496.70Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YVD3_9STRA2.120e-10269.78Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A1V9ZC42_9STRA5.060e-8861.84Intraflagellar Transport Protein n=1 Tax=Thraustot... [more]
A0A6A4ZTU4_9STRA8.770e-8856.90Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A0P1AMT9_PLAHL1.260e-8561.50Intraflagellar transport protein 172 n=1 Tax=Plasm... [more]
A0A813BFQ9_9DINO1.290e-8560.59IFT172 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A8K1FJC7_PYTOL3.190e-8561.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A397EVR2_9STRA4.770e-8560.18Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A7S0RE83_9CHLO1.370e-8457.89Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:700073..703494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LUB7
Preferred nameIFT172
PFAMsWD40
Model size791
Max annot lvl2759|Eukaryota
KEGG koko:K19676
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000226,GO:0001501,GO:0001654,GO:0001655,GO:0001822,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0002119,GO:0002164,GO:0003002,GO:0003007,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005856,GO:0005871,GO:0005875,GO:0005929,GO:0005930,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0008544,GO:0008589,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021915,GO:0021953,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031122,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031514,GO:0031982,GO:0032006,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035735,GO:0035869,GO:0036064,GO:0036126,GO:0040024,GO:0042073,GO:0042127,GO:0042592,GO:0042995,GO:0043009,GO:0043010,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045880,GO:0045892,GO:0045934,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048565,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048736,GO:0048793,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055115,GO:0055123,GO:0060021,GO:0060041,GO:0060173,GO:0060249,GO:0060255,GO:0060271,GO:0060322,GO:0060348,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0061525,GO:0065007,GO:0065008,GO:0070925,GO:0070986,GO:0071704,GO:0071840,GO:0072001,GO:0072175,GO:0072359,GO:0080090,GO:0097014,GO:0097223,GO:0097225,GO:0097228,GO:0097435,GO:0097542,GO:0097598,GO:0097708,GO:0097729,GO:0097730,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902531,GO:1902679,GO:1903506,GO:1903507,GO:1905515,GO:2000112,GO:2000113,GO:2001141
Exons4
Evalue7.82e-145
EggNOG OGsKOG3616@1|root,KOG3616@2759|Eukaryota
Ec32 ortholog descriptionIntraflagellar transport protein 172
Ec32 orthologEc-14_004390.1
Descriptioncilium assembly
Cds size789
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.8113616-CDS-P-littoralis_Contig62:700072..7002671680791295.8113616-CDS-P-littoralis_Contig62:700072..700267Pylaiella littoralis U1_48CDSP-littoralis_Contig62 700073..700267 +
1680791295.8252897-CDS-P-littoralis_Contig62:701507..7016991680791295.8252897-CDS-P-littoralis_Contig62:701507..701699Pylaiella littoralis U1_48CDSP-littoralis_Contig62 701508..701699 +
1680791295.8382552-CDS-P-littoralis_Contig62:702132..7023881680791295.8382552-CDS-P-littoralis_Contig62:702132..702388Pylaiella littoralis U1_48CDSP-littoralis_Contig62 702133..702388 +
1680791295.8536491-CDS-P-littoralis_Contig62:703348..7034941680791295.8536491-CDS-P-littoralis_Contig62:703348..703494Pylaiella littoralis U1_48CDSP-littoralis_Contig62 703349..703494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.180.1prot_P-littoralis_Contig62.180.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 700073..703494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.180.1

>prot_P-littoralis_Contig62.180.1 ID=prot_P-littoralis_Contig62.180.1|Name=mRNA_P-littoralis_Contig62.180.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=263bp
EARVGPRGGLRYRQSAVSEQEIVMQLRHLTTVTQPATGEGGDGVKMSKVM
AVAWAPNNRKLAVCTADRVVALYDENGEKRDRFSTKPAEKGPKNYIVRDL
CFSPDSTRLAVAQSDCIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPE
ARPNEVVFGLAEGKVKIGQLKSNKPATLYNVDTFCAALATSPDGNGVVSA
HADGTLYRFLFDDNGAPSHTKLVIHPSVPYALSWGISIVAAGNDGQVRGG
GAGGGGEGGGGA*
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mRNA from alignment at P-littoralis_Contig62:700073..703494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.180.1 ID=mRNA_P-littoralis_Contig62.180.1|Name=mRNA_P-littoralis_Contig62.180.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3422bp|location=Sequence derived from alignment at P-littoralis_Contig62:700073..703494+ (Pylaiella littoralis U1_48)
GAGGCAAGGGTGGGACCAAGAGGTGGTCTTCGATACAGACAGTCAGCCGT CAGTGAGCAGGAAATCGTCATGCAGCTGCGGCATCTGACCACGGTGACGC AGCCGGCCACCGGGGAAGGAGGCGATGGCGTCAAAATGTCAAAGGTTATG GCGGTGGCCTGGGCGCCAAACAACCGCAAGCTAGCGGTGTGCACGGTGAG AGAGAACGAAACGGCTCAAAGTACACGATACAACATGATACCTGGTACAT TTAGTTTTCGTCAGCGTTTTGCCTTGTTTCCTCTACTCCGGATGTTCAAA TAAATTCCCCAACGGATTCCCGTCTCCCGCATTCCTCGTTGGTGACATCT TACTCTTTTTTCTTTTTCCACCATTCCCATCCCGAAGCTAGGTGTTCAAC AGTGTGTGTGCTGTCATCCCTTTAATTGGACGCCACTCTACTCCTTTTCG GGTAGGTGGACGCTCCAACCGGTGCCAGGTAGAACATACAGTATCACATT CCTACACACACATACCCTCGACCTGGCCTTCAAACTTGGGGTAACAGCCA CGATTTATACCCAAAGTGTAACTCCATCAACCGAGCACAGCAGTATTTAC TGCGCTGTATTCAGTACTATGTTCCTCGTTTTTTTCGGAAGTGTGGCTGT TTACGGCAGTAGCGTGTGGACAAATGTCTCTCGCCGGGGAGCGCCGCTCT GTAGATCCTGCCACACTGTGAACTGGATCACCTGCATGCTTGACTGTGGC GTTCCGGTACCAGGCCAAGAAAGGTCTCTCGATTCCTATTACCAGAGCAT GCATACCGCAGTAGTTTCATACACTGCACGTCGTGGTGCTCTGTCTGAGA ACGACTCCCTCAAGAAGAATCGGTCGTAAACGATGTGTATGGCCCCAAGG CTCGATTAATTAAGAAGCGAGACTTTTCCCGTGTGGTAATTAGCCCTGGC GTATGTCACAAGTAGTTCGGTAACAAGATGTTGGGGCTTACAAGTACAAA GCATCAGGGATACATTCGCGTTGTCGTCGACGAAGAAAAGGCCTGTTTCA TGGAGACCGCGTCACTTTAGTGCCCCAGCTTGGGCAAAGGGGGAGTGTGT GGGGAGGGGCGCGGACGCCGAACTGCAAAGAACTTTTCATCTCCAACGAC TTTGATGCACTGGCGACACACAGGAAGTGCATCATTTTTTATCTTACTGC TTGACACTCCGACACATCTCATTTTTCTCCCGGGGATAATGACACGCTCT CCAAATATGCTGCGAAAAAACCAACATCAAAGAAGAAGAAATAACAGATT TCCATCTCGAAATGAGGCGAACAAGTAGCAGCGTGGGGTGGTCGTGTGCA ACGGTCCAAGCAAGGCAAGCAGCAACGAGTAAATCAACCCCCCTCGTCTA TCCTCGCCCTTTTTCCTCCCCCCCCTTATAAAAAGGCGGACCGAGTGGTG GCTCTGTACGACGAAAACGGCGAAAAACGAGACAGGTTCTCCACCAAACC CGCGGAGAAGGGCCCGAAGAACTACATCGTGAGGGACCTGTGCTTCAGCC CCGATAGCACCCGGCTCGCCGTCGCGCAGAGCGATTGCATCGTCTTCGTC TACAAGCTCGGGTTGGAATGGGGAGAGGTGGGTGCAAGGGGCTTGCAGCC ACGGCAGTATCTGTACATTTTGAATGACCGGGTTTTCGTCAAAACCGCCG TCGGTACAAGCTCGGCGTGGAAGGCGCGAGGAGGTGCTACTCTCCTCCAT GCAACGCCCAGAGCCATGCTCCAAGATCGTCCTTAAGCAAAAATGCTGTT GTTGATTCTCACATATGCTCACCACCACCACCGTAGTCTGGCCCGCGTGG TCACAAACCAGGCACATAATAAATGCTGAATGAATTGATAATAAATAGTT TTTGGAATGGGGGAGGACAAACGCTTGCTACTTCAAAGCAATCTACTAGT ACTCCCGCCCCCCGCCCTTTGCCCCGCCCCGCCCCACCCCGCACACACTT CCAAACCACACCACAACGACACCCACCGACCACATCACACTACAACCATA CACACACAAGAGTAAGAGCATCTGCAACAAGTTTCCGCAGCCGTCCCCGA TCACGTGCATGTCGTGGCCGGAGGCGAGGCCCAACGAGGTCGTCTTCGGG CTGGCGGAGGGGAAGGTGAAGATCGGCCAGCTCAAGTCTAACAAGCCCGC GACGCTGTACAACGTCGACACCTTCTGCGCGGCGCTAGCGACGAGCCCCG ACGGGAACGGGGTGGTGTCCGCTCACGCGGACGGAACCCTCTACCGGTTT CTCTTCGACGACAACGGTGCGTCTTTCGTTTCCGTCGCGTTCTTTTTTTC GATTGTGTTTTGTATTTTTCGGCGTGTGATTTGACTTGTACTCCCTCAAA ACCAAAAAAGACGTTAAGTACGTTCACATGCACGTATTTATGTACTCGGA GGTTAAAGATAAGATATATAAATTGTCTACGATGCTCGTGTACGATGGTG GCACTTTCGCAGCCGTTGTGTGTATTGATGACTTGTTCTTCAGGATGGTG TCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTT TGTGGGAAGCGAGCGGCTTTGGGGGTCCAGTTCACCCGGCCACAACCTTT CTCTTCGCACGGGTTTCAAAAATTATCCGAAGTGTTGAATAGCCGCATTT GTTAGTGTTACTATTTTTGATTTCACGGTCATATGTTTTCTCTCTTTTCA TGATGACGAGCGTTTTAAATACTCCGAGTATGTATCGCGTCCTCTCCCCC TCCTTTTTGTTCACTTTTTCTGTGGGGGGGGGGGGTTGCCGGCTTTCTTC TGTACCTTTGTTTACCCTTTCCCAACAAGAGTATACACGTCCGGGTGATG AGTGAGTGCGTGCGTGCGTGCGTGAGTCCAAACAGTAGTTTGCCAGATTG CCCTGTGGGCTTTGCTGCCCCTGCAAACACCCACCGCTCCTGAAACAGGC TGTGCGTAGGTTAGGGTTAGGCGACGAACCAGGGACCGGGACCTGCCCGC TCACTCGCTCGTGATGCACAAAAGACCACAGGACTGAATGCAAGACAACG AAAGGTTCCACGCACGCTGCACGCCATGAGTGGATCCTGTTTTACGCAAC AAAATTCGTACATTTACATATCATGTATATTTACTTGTCGTGAGTTTATT TTTTGGTTCTTGTTATTTGAGTCGTGAAAAAACGAGTGTCCATATGTGTA TGTATTCACGCGCCCATGCCCCACAGGCGCCCCGTCTCACACGAAGCTCG TGATACACCCTTCCGTACCGTACGCGCTGAGCTGGGGAATCAGTATCGTT GCCGCGGGGAACGACGGTCAGGTACGGGGGGGGGGGGCAGGGGGAGGCGG GGAGGGGGGGGGGGGGGCATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:700073..703494+

>mRNA_P-littoralis_Contig62.180.1 ID=mRNA_P-littoralis_Contig62.180.1|Name=mRNA_P-littoralis_Contig62.180.1|organism=Pylaiella littoralis U1_48|type=CDS|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig62:700073..703494+ (Pylaiella littoralis U1_48)
GAGGCAAGGGTGGGACCAAGAGGTGGTCTTCGATACAGACAGTCAGCCGT
CAGTGAGCAGGAAATCGTCATGCAGCTGCGGCATCTGACCACGGTGACGC
AGCCGGCCACCGGGGAAGGAGGCGATGGCGTCAAAATGTCAAAGGTTATG
GCGGTGGCCTGGGCGCCAAACAACCGCAAGCTAGCGGTGTGCACGGCGGA
CCGAGTGGTGGCTCTGTACGACGAAAACGGCGAAAAACGAGACAGGTTCT
CCACCAAACCCGCGGAGAAGGGCCCGAAGAACTACATCGTGAGGGACCTG
TGCTTCAGCCCCGATAGCACCCGGCTCGCCGTCGCGCAGAGCGATTGCAT
CGTCTTCGTCTACAAGCTCGGGTTGGAATGGGGAGAGAGTAAGAGCATCT
GCAACAAGTTTCCGCAGCCGTCCCCGATCACGTGCATGTCGTGGCCGGAG
GCGAGGCCCAACGAGGTCGTCTTCGGGCTGGCGGAGGGGAAGGTGAAGAT
CGGCCAGCTCAAGTCTAACAAGCCCGCGACGCTGTACAACGTCGACACCT
TCTGCGCGGCGCTAGCGACGAGCCCCGACGGGAACGGGGTGGTGTCCGCT
CACGCGGACGGAACCCTCTACCGGTTTCTCTTCGACGACAACGGCGCCCC
GTCTCACACGAAGCTCGTGATACACCCTTCCGTACCGTACGCGCTGAGCT
GGGGAATCAGTATCGTTGCCGCGGGGAACGACGGTCAGGTACGGGGGGGG
GGGGCAGGGGGAGGCGGGGAGGGGGGGGGGGGGGCATGA
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