mRNA_P-littoralis_Contig62.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.108.1
Unique NamemRNA_P-littoralis_Contig62.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.650e-76
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKEVP 372
            MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKK+ P
Sbjct:  501 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKKYP 624          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 6.670e-74
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKEVP 372
            MTVGKQHDGYWTSDRMCAQLPAAIA FEL++GPHRQGV IFDNSTGHN YDDDALLAHK+SLAPGGEK ALRVFEDDNG+TVHPT Q+G TLLTDKKIFLPKTEAQ+K KGRKFGTGLDKK+ P
Sbjct:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYP 124          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 7.790e-68
Identity = 110/124 (88.71%), Postives = 115/124 (92.74%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKEVP 372
            MTVGKQ DGYWTSDRMCAQLPAA+A FEL+NGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEK ALRVFEDDNG+ VHPTFQ GDTLLTDKKIFLPKT  QKK+KGRK GTGLDKK+ P
Sbjct:  553 MTVGKQQDGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKTALRVFEDDNGRMVHPTFQDGDTLLTDKKIFLPKTPEQKKIKGRKHGTGLDKKQYP 676          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 5.180e-58
Identity = 98/124 (79.03%), Postives = 107/124 (86.29%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKEVP 372
            M VG+QHDGYWTSD MCAQLPA IAM EL++GPHRQGVFIFDNSTGHN YD DALLAH I+LAPGGEK ALRVFED +GK V+PTFQ+GDTLLTD+KIFLPKTE QKK K RK GT LDK + P
Sbjct:  368 MPVGQQHDGYWTSDDMCAQLPAIIAMAELTSGPHRQGVFIFDNSTGHNPYDADALLAHNINLAPGGEKVALRVFEDVDGKKVYPTFQLGDTLLTDRKIFLPKTEEQKKNKKRKSGTALDKDKFP 491          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5KE66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE66_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 8.750e-40
Identity = 78/121 (64.46%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKK 363
            MTVG+QHD YWTSDRMCA+LPA IAM EL++GPHRQ V IFDNSTGHNAY +DALLAHKI++APGGEK ALRVFEDDNG TV                       +KK K RK GT LDKK
Sbjct:  360 MTVGQQHDRYWTSDRMCARLPAIIAMVELTSGPHRQDVLIFDNSTGHNAYGEDALLAHKINMAPGGEKGALRVFEDDNGNTV-----------------------EKKQKERKNGTALDKK 457          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.690e-28
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ 318
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++  KT  Q
Sbjct:   91 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQ 196          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.450e-28
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ 318
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++  KT  Q
Sbjct:  524 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQ 629          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5JRU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.300e-27
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ 318
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++  KT  Q
Sbjct:  264 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILD-FLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQ 368          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.620e-27
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIF 297
            MTVG+  DGYWT+DRMC Q+P  IA+ EL++ PHR  V +FDNSTGH AY++ AL+A  I   PGG +  L  F DD G  VH TF+ GDT+L D  ++
Sbjct:  978 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLLDTHVY 1076          
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Match: A0A6H5KGB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.680e-25
Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQK---KMKGRKFG 345
            + VGK  DGYW  +R+C QLPA  A FELS  P RQ + +FDNSTGHNA+  DAL A  I+L+ GGE+     FE  NG+T++ TFQ+GD L      F  KTE +K   K  G+K G
Sbjct:  177 LRVGKNLDGYWDCNRLCVQLPAIFAAFELSREPGRQMLMVFDNSTGHNAFSPDALRAQNIALSAGGEQVPPHSFEY-NGRTIYTTFQLGDKLRFKTAPFARKTEEEKTAKKRNGKKLG 293          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJM4_9PHAE1.650e-7698.39Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D7FZS5_ECTSI6.670e-7487.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K550_9PHAE7.790e-6888.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD27_9PHAE5.180e-5879.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE66_9PHAE8.750e-4064.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JT56_9PHAE1.690e-2852.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE3.450e-2852.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU6_9PHAE2.300e-2752.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE5.620e-2753.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGB3_9PHAE1.680e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:485192..485810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZS5
Model size619
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.37e-76
EggNOG OGs2D16T@1|root,2SGXK@2759|Eukaryota
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791293.899004-CDS-P-littoralis_Contig62:485191..4856201680791293.899004-CDS-P-littoralis_Contig62:485191..485620Pylaiella littoralis U1_48CDSP-littoralis_Contig62 485192..485620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791293.9111578-UTR-P-littoralis_Contig62:485620..4858101680791293.9111578-UTR-P-littoralis_Contig62:485620..485810Pylaiella littoralis U1_48UTRP-littoralis_Contig62 485621..485810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.108.1prot_P-littoralis_Contig62.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 485192..485620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.108.1

>prot_P-littoralis_Contig62.108.1 ID=prot_P-littoralis_Contig62.108.1|Name=mRNA_P-littoralis_Contig62.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAY
DDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFL
PKTEAQKKMKGRKFGTGLDKKEVPRRNQSHVWIAAARAQQRR*
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mRNA from alignment at P-littoralis_Contig62:485192..485810+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.108.1 ID=mRNA_P-littoralis_Contig62.108.1|Name=mRNA_P-littoralis_Contig62.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=619bp|location=Sequence derived from alignment at P-littoralis_Contig62:485192..485810+ (Pylaiella littoralis U1_48)
ATGACTGTTGGGAAGCAGCATGATGGCTACTGGACGAGCGACCGCATGTG CGCCCAACTACCGGCGGCTATCGCTATGTTCGAGCTGTCGAACGGGCCGC ACCGCCAGGGTGTCTTCATCTTCGACAATTCCACTGGGCACAACGCCTAC GACGACGACGCGTTGCTGGCCCACAAGATCAGCTTGGCGCCGGGTGGGGA GAAGGCCGCGCTCAGGGTGTTCGAGGATGACAACGGGAAAACGGTACACC CTACATTTCAGGTTGGTGACACCCTGCTCACCGACAAGAAGATATTCTTA CCGAAGACAGAGGCGCAGAAGAAGATGAAAGGGCGCAAATTTGGAACGGG GCTTGACAAAAAAGAAGTACCCCGTCGGAACCAGAGTCACGTCTGGATCG CCGCTGCTCGGGCTCAACAAAGGAGGTGAGCAGATGCTCAAGGAGATGGG GTTGTGGCGGCTTGACGGCGAGAGGGCGAAGGGGCTCGTCAAGTGCTGCA ACAAGTGCAAGGCCGACAACGCGGCCTCACGGCAAGCGATCGCAGCATTC AACAAAGGCGGCGAGCAGCGTGAGAGGGTTCTAGAGCAAGCGCGGCGGGA GCAGCAGAGTTCTCCTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:485192..485810+

>mRNA_P-littoralis_Contig62.108.1 ID=mRNA_P-littoralis_Contig62.108.1|Name=mRNA_P-littoralis_Contig62.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig62:485192..485810+ (Pylaiella littoralis U1_48)
ATGACTGTTGGGAAGCAGCATGATGGCTACTGGACGAGCGACCGCATGTG
CGCCCAACTACCGGCGGCTATCGCTATGTTCGAGCTGTCGAACGGGCCGC
ACCGCCAGGGTGTCTTCATCTTCGACAATTCCACTGGGCACAACGCCTAC
GACGACGACGCGTTGCTGGCCCACAAGATCAGCTTGGCGCCGGGTGGGGA
GAAGGCCGCGCTCAGGGTGTTCGAGGATGACAACGGGAAAACGGTACACC
CTACATTTCAGGTTGGTGACACCCTGCTCACCGACAAGAAGATATTCTTA
CCGAAGACAGAGGCGCAGAAGAAGATGAAAGGGCGCAAATTTGGAACGGG
GCTTGACAAAAAAGAAGTACCCCGTCGGAACCAGAGTCACGTCTGGATCG
CCGCTGCTCGGGCTCAACAAAGGAGGTGA
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