mRNA_P-littoralis_Contig62.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.97.1
Unique NamemRNA_P-littoralis_Contig62.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig62.97.1 vs. uniprot
Match: A0A6H5JBD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.490e-28
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   37 MGDDGCSASELRRRYHMGGELTDDTLTAPQLRARYGIKKNTAEFSTKVDRTRSGASTSFLGPWIAVLIFLI 249
            MGDDGCSASELRRRYHMGG+L DD+LTAPQLRARYGIKKNTAEFSTK    RSG  TS + P  AVL  ++
Sbjct:    1 MGDDGCSASELRRRYHMGGDLKDDSLTAPQLRARYGIKKNTAEFSTKTGGARSGDMTSSVWPLAAVLALVL 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBD6_9PHAE2.490e-2874.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:432554..435449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008617777.1
Model size255
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.82e-07
EggNOG OGs2E6J9@1|root,2SD8M@2759|Eukaryota
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791293.4823236-CDS-P-littoralis_Contig62:432555..4326441680791293.4823236-CDS-P-littoralis_Contig62:432555..432644Pylaiella littoralis U1_48CDSP-littoralis_Contig62 432556..432644 -
1680791293.493601-CDS-P-littoralis_Contig62:435286..4354491680791293.493601-CDS-P-littoralis_Contig62:435286..435449Pylaiella littoralis U1_48CDSP-littoralis_Contig62 435287..435449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.97.1prot_P-littoralis_Contig62.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 432556..435449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.97.1

>prot_P-littoralis_Contig62.97.1 ID=prot_P-littoralis_Contig62.97.1|Name=mRNA_P-littoralis_Contig62.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
KGRRVADHSDKGMGDDGCSASELRRRYHMGGELTDDTLTAPQLRARYGIK
KNTAEFSTKVDRTRSGASTSFLGPWIAVLIFLIF
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mRNA from alignment at P-littoralis_Contig62:432554..435449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.97.1 ID=mRNA_P-littoralis_Contig62.97.1|Name=mRNA_P-littoralis_Contig62.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2896bp|location=Sequence derived from alignment at P-littoralis_Contig62:432554..435449- (Pylaiella littoralis U1_48)
AAAGGGAGACGAGTTGCCGACCATTCAGACAAGGGGATGGGAGATGATGG
CTGCAGCGCTTCTGAACTCAGACGTCGGTATCACATGGGAGGCGAGCTAA
CGGATGACACTTTGACCGCACCGCAGCTTCGCGCCCGGTATGGAATCAAG
AAGAACACGGCAGGTGTGTATCACGTGTGGTATATTTGTGCCGCATTTGT
AACGTCGAAGTCATGCATCGTGTCCTGCACTTGTGTACCCGTGTTATGGA
AAAGACGACAGCTTGTTGTGTGTATCTTATGTGGCATGCATTCTGCTGAG
TGAGCTGTATGAAAGCATCGTCCAAATAATCCTATATTGCATCATGTAAA
ACGGAACGGCTTTCTGCTTACGTAATATATCCGCTCCCTCACACCAAAAA
CTATTTCTTCGAAGTATTATACCTGGTATGCTCGGAGTACGAAGTATTTA
TGATTTGTATTAAGTATTTATGATTTGTATTATTATGTACCTGGTACACA
TTGTGAGATGCTGTTCGCGTCTTAGCAGATTGTTCTGAAATATATATTCA
GTCTTCAGTCTTCACTGCTGATGCACAGCAGTTTGTGGGCGGGGGAATAC
ATCACACCACCACGGGATCCTCCACTGCGTTGTACTGTGTACAGGCTGGT
TCACAGGTTGAAATTAGTCAGCAGATGAATCCTGAACGCAATGCTTACCG
GTACCCCATCACTCTTCATACAAATACCCTAAGTCAAAGAGAGAGGTACT
AAATTGACCGACATCCATATTTAAAGCAGAAGACATATTCCTGGGAGTTT
TGAGTGTACCTGGTGAGGCTCTAGTAGTGGTTGAGCTAGGAGCGAAGATG
TGTTCCGGCTAATGAAAGCGCTCCAAAATGTCATGGTTATCAGGCTTTTC
ACTCATAGATAAAGTGTAAGTGAGGATTATATATTCGAACACCGATGACC
AGTATCTATGGGAACTCAAGGAAGCTTTTGAACCCGAGGAAAGGTGTTCG
CAATATTTTTTCTTCTTAAATCCACGAAAACTTAGGCGGTTTGGCTGGTT
TCAGCTAAAACCCCAGAAGAGAGCCGACTATGTAACAAACCCAAGCAGGT
AGGAGTGTTTTAGGTACTTGCGTGACCAGACTGAAGTACGATTCCTGACG
CGTTTTGTTCGAGCTAGATCCTGAAATTTTGGGCGCACATGTGCTATGGG
CCATAACGCGACTACCACGGGGTGTCTTTCTCATTCTTTCTACCAGGTAC
CTGGAGTCCCAGCCGACCTCGGTCGACCCGAAAACCCTTGATATCTGGAT
GTTTGTCAAAAAGCAAAAATAAAAATATCCTCCGGTCGTAGAAAGTTCTG
CGTACTAGCTCGGAGAGGGCATGGCGTGCAAGACGTGAGGGCGTTCCACC
TCGAAACAACCGCGCGAGAAATCGCTGCTGACTCAATTTGTGGCGTTTAC
AACCAACCTTGAACCACCCTGTACAATGCCGAACTTTTTTCACCAGATAT
GTAGGGTCCTAGTAGATCCAGGCAGACCCGGAAACCCTTTGTGTTGTCAT
CCCTTTCATTGGACGCCACTCTACACCTTGCAGGTAGGTAGACGCTCCAA
CCGGGGTCACACAGGGGGAAGTCAACACAATTTTTTTTTTTTCTCCACTT
CCCTCTGCGGTGCTTGCCTTTTTGGTTGAGCTTTTATCGCGAGAAAGGGG
ACAGCAATCTCATTCCCTCGTCGATGGTACGATCGAATTTTGTTTACTCA
CGAATTGATCGCTTTTCACTTTCACGCGCAATGTGAGAAAAAGCCCCAGA
TCGTGTTACTGCACTGGGATTCGAACTCACGCGTGAATGTCAGAAGGTTG
CGTGGATGACCAACTGAACCACCGGGGCGACCGGCCACTAAGTACAGCTG
TCTCGAAAAAAAAGAAAAAAATCCACGGTCGAAGACAGTTGCGTACTCTA
GCCCAGGTACATGCGGGCAAAATTTCAAAATTTTGGGCTCTGACTCCATA
AAAATGCGTGAGGAATCGCTGCTGACTAAAATTGTGGCTTTCGACCTGAC
CAGCCTGTACAACAACGCCGAACCGTACGCACGCCATTCGACCGTTTGAT
GCATGAGCCCACTGATATTCCCAATCAATCTACCGCCGCTGCAAATCGTA
CACTCTCTGCGATTTTGATGTTCTGTGCGGCGCGGATACATACCTCACCA
CCCGAAAAATAAATGTGCGTTTCTTGGGGATACAGTACGGTGAGACGTTC
TACGTTCGATATCAGATGTTCGGTCAAAATCTGGGAGCCATTGTAGCCAA
TAAGTTTGAAAAGAGCGTGGGGTGTCCGACTTACTCCAGTCGAATCCAAG
AGAAAATTTTCGAGCTTCGTTTACCCCCCTAGAGCAATTACCCCGCCGGA
TGAATTTGTGCTCTTGAACGCAATATCTTCGCCGGGCTTGGAGGCCACGG
ACGAATGAGGAAGACTTTCTTTGGAACTAGTATTGAATTTCTGAACTTTG
CCTGAAGCTTCCGCCCGCAAACGGCTGGTAGAAAGCTCACTTTTCATTAT
CTGGGTAGTACTGTATGAATACTTATCAGCTTCCTGGCTTGTAGAACCTT
GTCATTTACCCTCTTGCGATCATTGACGTTCTTCGGTGACCAGACGGTTG
ACATGGTCAATTTGAAGGAAACGCACACACGAAAACACCCACGGTACCTT
GGAAGCCACAGCTACAAGGCAGAGAGTTGGTGTAAAAATTGTCTGAGTAT
TTAATTCGTATGTTTGACCGCCCGCTGCCGTAACACCACTTTTGAATCCA
AACAGAGTTCAGCACGAAGGTCGACAGAACGCGGAGCGGTGCTTCCACTT
CTTTCTTGGGACCATGGATCGCCGTGCTTATCTTTCTAATCTTCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:432554..435449-

>mRNA_P-littoralis_Contig62.97.1 ID=mRNA_P-littoralis_Contig62.97.1|Name=mRNA_P-littoralis_Contig62.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig62:432554..435449- (Pylaiella littoralis U1_48)
AAAGGGAGACGAGTTGCCGACCATTCAGACAAGGGGATGGGAGATGATGG
CTGCAGCGCTTCTGAACTCAGACGTCGGTATCACATGGGAGGCGAGCTAA
CGGATGACACTTTGACCGCACCGCAGCTTCGCGCCCGGTATGGAATCAAG
AAGAACACGGCAGAGTTCAGCACGAAGGTCGACAGAACGCGGAGCGGTGC
TTCCACTTCTTTCTTGGGACCATGGATCGCCGTGCTTATCTTTCTAATCT
TC
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