mRNA_P-littoralis_Contig617.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig617.58.1
Unique NamemRNA_P-littoralis_Contig617.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig617.58.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.460e-10
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:  328 GNHSGSATQTPMRASSVNTPDRVSSQDVYALKHFCLPQPSPQSQADEHNALYMAARIQGGEAGPGTLRAATRALTVFHGSGVKILSLFEVLVFSYHWHVQA 630
            GN+  SAT+     +  + P     +D+YA+     P+P  QS+ D   AL+ AA+      G   L A TRAL   H  GV++LSLFEVLVF+Y+WH +A
Sbjct:  748 GNNRNSATRETAARTFQDLPRTTDREDMYAVIETAGPRPGLQSEVDSDEALFWAAKFSKVVGGQSKLTA-TRALDALHRDGVRVLSLFEVLVFTYYWHRKA 847
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BLAST of mRNA_P-littoralis_Contig617.58.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.180e-8
Identity = 46/120 (38.33%), Postives = 62/120 (51.67%), Query Frame = 1 
Query:  328 GNHSGSATQTPMRASSVNTPDRVSSQDVYALKHFCLPQPSPQSQADEHNALYMAARIQGGEAGPGTLRAATRALTVFHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 687
            G+HS S T    + S    P R S  DVYALK         QSQ + ++ L+ +A  QG       L AATRA+     +GV++LSLFEVL+F+Y W     E    +  LG+ GWT  +
Sbjct:  412 GSHSSSTTVEAPQVSVPVPPKRDSKVDVYALKAAAQGD-RVQSQVNVYDLLHASAETQGPVPKAVNL-AATRAVAGLREAGVRVLSLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR 529
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BLAST of mRNA_P-littoralis_Contig617.58.1 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.010e-6
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 1 
Query:  328 GNHSGSATQTPMRASSVNTPDRVSSQDVYALKHFCLPQPSPQSQADEHNALYMAARIQGGEAGPGTLRAATRALTVFHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 687
            G++S S T    + S    P R S  DVYALK         Q+Q + ++ L+ +A  QG       L AATRA+     +G+++LS FEVLVF+Y W     E    +  LG+ GWT  +
Sbjct:  322 GSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGD-RVQNQVNVYDLLHASAETQGPVPEAVNL-AATRAVAALREAGIRVLSFFEVLVFTYVWLRNIAEDEPGMLELGATGWTLRR 439
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BLAST of mRNA_P-littoralis_Contig617.58.1 vs. uniprot
Match: A0A6H5KPP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 9.140e-6
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:  331 NHSGSATQTPMRASSVNTPDRVSSQDVYALKHFCLPQPSPQSQADEHNALYMAARIQGGEAGPGTLRAATRALTVFHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 687
            N+S S T    + S   TP R S  DVYALK         Q+Q + ++ L+ +A  +G       L AATR +     + ++++SLFEVL+F+Y W     E    +  +G+ GWT  +
Sbjct:   15 NNSASTTVEAPQVSLPVTPKRDSKVDVYALKAAAQGD-RVQNQVNVYDLLHASAETRGPVPKAVNL-AATRDVAALREAAIRVISLFEVLIFTYVWLRNIAEDEPGMLEIGAPGWTLRR 131
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BLAST of mRNA_P-littoralis_Contig617.58.1 vs. uniprot
Match: A0A6H5JN33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN33_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.890e-5
Identity = 38/101 (37.62%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:  385 PDRVSSQDVYALKHFCLPQPSPQSQADEHNALYMAARIQGGEAGPGTLRAATRALTVFHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 687
            P R S  D+ ALK         QSQ + ++ L+ +A  QG       L AATRA+     +G+++LSLFEVLVF+Y W     E    +  LG+ GWT  +
Sbjct:   86 PKRDSKVDLCALKAAAQGD-RVQSQVNVYDLLHASAETQGPVPKAANL-AATRAVAALWEAGIRVLSLFEVLVFTYVWLRNITEDEPDMLELGATGWTLRR 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig617.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE4.460e-1040.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGH9_9PHAE8.180e-838.33CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGB2_9PHAE2.010e-635.83CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KPP6_9PHAE9.140e-632.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN33_9PHAE3.890e-537.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig617contigP-littoralis_Contig617:158496..159871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size739
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.5347548-CDS-P-littoralis_Contig617:158495..1588731680791285.5347548-CDS-P-littoralis_Contig617:158495..158873Pylaiella littoralis U1_48CDSP-littoralis_Contig617 158496..158873 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.5480142-UTR-P-littoralis_Contig617:158873..1590811680791285.5480142-UTR-P-littoralis_Contig617:158873..159081Pylaiella littoralis U1_48UTRP-littoralis_Contig617 158874..159081 -
1680791285.5569687-UTR-P-littoralis_Contig617:159719..1598711680791285.5569687-UTR-P-littoralis_Contig617:159719..159871Pylaiella littoralis U1_48UTRP-littoralis_Contig617 159720..159871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig617.58.1prot_P-littoralis_Contig617.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig617 158496..158873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig617.58.1

>prot_P-littoralis_Contig617.58.1 ID=prot_P-littoralis_Contig617.58.1|Name=mRNA_P-littoralis_Contig617.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MRASSVNTPDRVSSQDVYALKHFCLPQPSPQSQADEHNALYMAARIQGGE
AGPGTLRAATRALTVFHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVL
GSDGWTTEKQGQAQGQEQGQMHGLVQ
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mRNA from alignment at P-littoralis_Contig617:158496..159871-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig617.58.1 ID=mRNA_P-littoralis_Contig617.58.1|Name=mRNA_P-littoralis_Contig617.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1376bp|location=Sequence derived from alignment at P-littoralis_Contig617:158496..159871- (Pylaiella littoralis U1_48)
CGAGACCCCCGACAACTTCACGGATGAGCAGGCGGAAAAGTTCGAGGGGT
GGCTGAATGGGAAGAAGAGCGGCATGGACGCTGTAGACAGGTTGACGTAT
CTACAGCTACAAGAGTTGTATCGTTTAATCTTCGACACGGGGGTCTCAAA
GTGAGTTGATTCATATTCTGCTCTAGAACATCGCCATTTATCAAAGATCA
TGGTAACCCTGTTTACTATCAAACCACGCGCAAGTAATGAGAAGGCCGTA
ATTTTGGTGTTGGTTGCTGCGCACGTCGTGGCCGGAAACTTTCATACGTT
GACACATTCCAAAGCTCGAAAGATCATGTCCTTACGTCCTCTGGCTGGTG
TTGACGAGACTCACATGCATCACCGTCCACCGAAAAATCGCTTATTACTC
TTGATCGCGCAGGTTCTCCACTGTGGAGGGTTTCAAAGATCTCTTCAAGC
GCTTGCACACATTTGCGCTGTCGGCTGACCAAGCAACTGTCAGTACGTGT
TCCAAGCTGTTCCCCGACCGAGTAGGAAGAATGAGCGTTGGAATTTTCAC
CTGCTTAGTCCCGTCCGGGTGTGTGTGGGCAGAGCGGACTTTGCTGACGC
GCGAGAGCCCGATGGACGTAGTCGACATCGTTGCCGAGATGGTGGTAAGC
TTCCTGTTGGAGCACCGCAATACGCATCTGCAGCAGGTCAAACCGTACCC
GACATACGCACATGGTGTTAGAATTATACATGTCTCTTTCCCCGTGCCAA
AAAATACATCTGAGTGTTTTTTTCTGCCGTGGTATCACGTTCAACAAAGA
GGTCCCACCGAATCTTCTGGTTTATGACGCAGCATGCAAGACTGTTCGTG
CTTTCGAGGATAGGTGTCCGGGCTTACTAGACAACGGGGGGAAGCTACCG
CGCGTTGCAGTAGAAGCGGGGTCGACAGCGGTGGGGCGCGTGGTGCTCCC
CCACCTTGCCCACCTGGGAACCATAGCGGAAGCGCTACGCAGACGCCCAT
GCGGGCCTCGTCTGTCAATACGCCCGACAGGGTGAGTTCTCAAGACGTGT
ACGCCCTCAAGCACTTTTGTTTGCCTCAGCCATCTCCTCAAAGCCAAGCA
GACGAGCACAATGCTCTCTACATGGCGGCTAGAATACAAGGGGGAGAAGC
GGGCCCGGGAACCCTACGGGCGGCTACGAGGGCCTTGACGGTCTTCCATG
GAAGCGGCGTGAAGATACTGTCATTGTTCGAGGTGCTCGTATTCAGCTAT
CACTGGCATGTACAGGCAAGGGAGTCTGGGTCACAAGTGGCGGTGCTGGG
GAGCGACGGGTGGACCACGGAGAAGCAGGGGCAGGCACAGGGACAGGAGC
AGGGGCAAATGCATGGGCTGGTGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig617:158496..159871-

>mRNA_P-littoralis_Contig617.58.1 ID=mRNA_P-littoralis_Contig617.58.1|Name=mRNA_P-littoralis_Contig617.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig617:158496..159871- (Pylaiella littoralis U1_48)
ATGCGGGCCTCGTCTGTCAATACGCCCGACAGGGTGAGTTCTCAAGACGT
GTACGCCCTCAAGCACTTTTGTTTGCCTCAGCCATCTCCTCAAAGCCAAG
CAGACGAGCACAATGCTCTCTACATGGCGGCTAGAATACAAGGGGGAGAA
GCGGGCCCGGGAACCCTACGGGCGGCTACGAGGGCCTTGACGGTCTTCCA
TGGAAGCGGCGTGAAGATACTGTCATTGTTCGAGGTGCTCGTATTCAGCT
ATCACTGGCATGTACAGGCAAGGGAGTCTGGGTCACAAGTGGCGGTGCTG
GGGAGCGACGGGTGGACCACGGAGAAGCAGGGGCAGGCACAGGGACAGGA
GCAGGGGCAAATGCATGGGCTGGTGCAG
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