mRNA_P-littoralis_Contig615.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig615.38.1
Unique NamemRNA_P-littoralis_Contig615.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig615.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig615contigP-littoralis_Contig615:160209..161585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons3
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791281.4440129-CDS-P-littoralis_Contig615:160208..1603251680791281.4440129-CDS-P-littoralis_Contig615:160208..160325Pylaiella littoralis U1_48CDSP-littoralis_Contig615 160209..160325 -
1680791281.4560804-CDS-P-littoralis_Contig615:160763..1608331680791281.4560804-CDS-P-littoralis_Contig615:160763..160833Pylaiella littoralis U1_48CDSP-littoralis_Contig615 160764..160833 -
1680791281.4726226-CDS-P-littoralis_Contig615:161445..1615401680791281.4726226-CDS-P-littoralis_Contig615:161445..161540Pylaiella littoralis U1_48CDSP-littoralis_Contig615 161446..161540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791281.4844656-UTR-P-littoralis_Contig615:161540..1615851680791281.4844656-UTR-P-littoralis_Contig615:161540..161585Pylaiella littoralis U1_48UTRP-littoralis_Contig615 161541..161585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig615.38.1prot_P-littoralis_Contig615.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig615 160209..161540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig615.38.1

>prot_P-littoralis_Contig615.38.1 ID=prot_P-littoralis_Contig615.38.1|Name=mRNA_P-littoralis_Contig615.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MPVDDVSPQRRYRRSTGCFARLRHKYGWCCRSTRRPRKVAKTDNTRLVPP
TPLEQLFSWAVPSRRVTRPATGTRGSTPSDWEAVAGEGLRHTTA
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mRNA from alignment at P-littoralis_Contig615:160209..161585-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig615.38.1 ID=mRNA_P-littoralis_Contig615.38.1|Name=mRNA_P-littoralis_Contig615.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1377bp|location=Sequence derived from alignment at P-littoralis_Contig615:160209..161585- (Pylaiella littoralis U1_48)
AAGAACACCGCGTACTTGTAACGCGTGTTCGAGAGGCGCTTCAAGATGCC
GGTTGACGATGTATCGCCGCAGAGGAGATATCGCCGGTCAACGGGATGCT
TCGCGCGGCTCCGCCATAAATATGGGTGGTGCTGTAGAAGGTGCAGTTGG
TGTGCCCCCTACCAATACTACTTGTCGAGAAATACTCCGTACAGTCGCCA
ATACGCTACTGTTCTACAGTATTCCGGATGGCTGTAGGCAGGAAAATGGC
ATCACTTCTCGTTGTTCCAGGTTCACGGTGTGCACGCGCTCGCGTGGAAT
ATTTTAGAATACCCCACCAGCGTGCGGTACCTGTGACCGGAAGAAGATCC
GAATTGTGGCGAGCAGGCCCGCCATTCTGAGCTATTCGTGCTCTACAACA
GAGCGCCAGAGCCATGTTTACCCCTCGCCCCGCCCACGCGGCTTAGCCTG
CCACCGGACCGTCGTGTCTAGCTGTATGCCGTTTGGTGTGCTGGTGAGCA
TCATGCCGCCTCATCCCTCAGGACAGAATCGCTTGGACACAGAAGTCACA
CCGAAATACCCAGGGTTAGGGTTAGGAATGGACTCGCCGACGCTGCCTCA
GGCGTACTCTTGCACACCCCTTCCAGACTGGCCATTCACTAGCATATCAT
ACCTATCCACCAATATTCTACGGCTTGAAGAACGTAGCCCCAACAGGTCC
TGATGTGATTTTTTGTGGTGCCGCCGTTGATTTTGTGTGCCGTGGCCTCC
AGCACCCGCCGTCCGAGGAAGGTGGCCAAGACCGACAACACCAGGCTTGT
CCCCCCCACCCCTCTGGAACAGGCAAGCAAGTCATTTGTTTTTTTGTATG
TGGCTTAGTTTTTGGTACTACAAGGATACCTGAGTGAAGCGTGGTCAGTC
GTAACGGCGTTCCCGCTCTCGCAGAAAACGTACTCCGTGTAGCGAGCGCT
GTGGTGCAGCATTTCCCGAAGGTCGAGTATGATAGTAATGAAGTGTGTAG
AGAAAGATGTCCGCCGAACTTTTGTAAAAAGCACTAACTGTTTCGGGCGC
TACCAACAAAGACGGGAAGCCATTACTGTAGCCAATACTCTTTTATACGC
ACGCATATTATGCAGTTATTTACTCCACTGATGGTCTCTATCGCGGCATG
AAACTCCAAGCCGCATGAAGCGTTTTGCTGAGCGTGCTTGTCAACTCTGT
GCGGTATTGTCCGGTGTGTTGCGCCCGCGGTTGCTTTTCCTGTGTCGTGG
TTGTCTGCAGCTGTTCTCTTGGGCAGTTCCTTCCCGGCGTGTCACTCGTC
CGGCGACTGGAACTCGCGGATCAACGCCCTCTGACTGGGAAGCTGTGGCG
GGTGAAGGGCTGAGGCATACCACGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig615:160209..161585-

>mRNA_P-littoralis_Contig615.38.1 ID=mRNA_P-littoralis_Contig615.38.1|Name=mRNA_P-littoralis_Contig615.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig615:160209..161585- (Pylaiella littoralis U1_48)
ATGCCGGTTGACGATGTATCGCCGCAGAGGAGATATCGCCGGTCAACGGG
ATGCTTCGCGCGGCTCCGCCATAAATATGGGTGGTGCTGTAGAAGCACCC
GCCGTCCGAGGAAGGTGGCCAAGACCGACAACACCAGGCTTGTCCCCCCC
ACCCCTCTGGAACAGCTGTTCTCTTGGGCAGTTCCTTCCCGGCGTGTCAC
TCGTCCGGCGACTGGAACTCGCGGATCAACGCCCTCTGACTGGGAAGCTG
TGGCGGGTGAAGGGCTGAGGCATACCACGGCG
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